2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
source organism Pyrococcus furiosus
molecule tags Transferase
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
2AKOA 4KZTA 4AXSA 4NDRA 3TVIA 3KZFA 2JJXA 1GS5A 3K4YA 3S6KA 2E9YA 3AB4A 2AP9A 2OGXB 2BRIA 3ZZGA 2BNEA 3L86A 3WWNA 3K52A 3WWMA 2BRXA 3LKKA 3D2MA 3T7BA 1OHAA 3L76A 2A1FA 1Z9DA 2IJ9A 3NWYA 2BNDA 2J4JA 4NDPB 2W21A 3EK5A 3D2PA 3ZZIA 3QUNA 4NDQA 2V4YA 3LL9A 2J0XA 4A7WA 4A7XA 1B7BA 3K4OA 2BMUA 3B8GA 2R98A 2JI5A 3K56A 2JJ4A 3QUOA 4NDOA 4F6TB 2V5HA 3U6UA 1E19A 2X2WA 2HMFA 2BUFA 2J4KA 3QVFA 3QVHA 1GSJA 2J0WA 4JZ9A 3QURA 2J4LA 3EK6A 2OGXA 4NDRB 2RD5A 4AB7A 4JZ8A 2BNFA 2WE4A 3C1MA 3D41A 4NDOB 2CDQA 4Q1TA 3C20A 3D40A 4NDPA 2J5TA 3AAWA 4USJA 1OH9A 2WXBA 4I49A 1YBDA 4OLCA 4NDQB 1OHBA 4F6TA 3ZZHA 2WE5A 2R8VA 3C1NA 2VA1A 3S6GA 3ZZFA 3LL5A 2J5VA 4JZ7A 2BTYA 3AB2A 3S6HA
chains in the Genus database with same CATH superfamily
2AKOA 4KZTA 4AXSA 4NDRA 3TVIA 3KZFA 2JJXA 1GS5A 3K4YA 3S6KA 2E9YA 3AB4A 2AP9A 2OGXB 2BRIA 3ZZGA 2BNEA 3L86A 3WWNA 3K52A 3WWMA 2BRXA 3LKKA 3D2MA 3T7BA 1OHAA 3L76A 2A1FA 1Z9DA 2IJ9A 3NWYA 2BNDA 2J4JA 4NDPB 2W21A 3EK5A 3D2PA 3ZZIA 3QUNA 4NDQA 2V4YA 3LL9A 2J0XA 4A7WA 4A7XA 1B7BA 3K4OA 2BMUA 3B8GA 2R98A 2JI5A 3K56A 2JJ4A 3QUOA 4NDOA 4F6TB 2V5HA 3U6UA 1E19A 2X2WA 2HMFA 2BUFA 2J4KA 3QVFA 3QVHA 1GSJA 2J0WA 4JZ9A 3QURA 2J4LA 3EK6A 2OGXA 4NDRB 2RD5A 4AB7A 4JZ8A 2BNFA 2WE4A 3C1MA 3D41A 4NDOB 2CDQA 4Q1TA 3C20A 3D40A 4NDPA 2J5TA 3AAWA 4USJA 1OH9A 2WXBA 4I49A 1YBDA 4OLCA 4NDQB 1OHBA 4F6TA 3ZZHA 2WE5A 2R8VA 3C1NA 2VA1A 3S6GA 3ZZFA 3LL5A 2J5VA 4JZ7A 2BTYA 3AB2A 3S6HA
chains in the Genus database with same CATH topology
2AKOA 4KZTA 4AXSA 4NDRA 3TVIA 3KZFA 2JJXA 1GS5A 3K4YA 3S6KA 2E9YA 3AB4A 2AP9A 2OGXB 2BRIA 3ZZGA 2BNEA 3L86A 3WWNA 3K52A 3WWMA 2BRXA 3LKKA 3D2MA 3T7BA 1OHAA 3L76A 2A1FA 1Z9DA 2IJ9A 3NWYA 2BNDA 2J4JA 4NDPB 2W21A 3EK5A 3D2PA 3ZZIA 3QUNA 4NDQA 2V4YA 3LL9A 2J0XA 4A7WA 4A7XA 1B7BA 3K4OA 2BMUA 3B8GA 2R98A 2JI5A 3K56A 2JJ4A 3QUOA 4NDOA 4F6TB 2V5HA 3U6UA 1E19A 2X2WA 2HMFA 2BUFA 2J4KA 3QVFA 3QVHA 1GSJA 2J0WA 4JZ9A 3QURA 2J4LA 3EK6A 2OGXA 4NDRB 2RD5A 4AB7A 4JZ8A 2BNFA 2WE4A 3C1MA 3D41A 4NDOB 2CDQA 4Q1TA 3C20A 3D40A 4NDPA 2J5TA 3AAWA 4USJA 1OH9A 2WXBA 4I49A 1YBDA 4OLCA 4NDQB 1OHBA 4F6TA 3ZZHA 2WE5A 2R8VA 3C1NA 2VA1A 3S6GA 3ZZFA 3LL5A 2J5VA 4JZ7A 2BTYA 3AB2A 3S6HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AKO A;  4KZT A;  4AXS A;  4NDR A;  3TVI A;  3KZF A;  2JJX A;  1GS5 A;  3K4Y A;  3S6K A;  2E9Y A;  3AB4 A;  2AP9 A;  2OGX B;  2BRI A;  3ZZG A;  2BNE A;  3L86 A;  3WWN A;  3K52 A;  3WWM A;  2BRX A;  3LKK A;  3D2M A;  3T7B A;  1OHA A;  3L76 A;  2A1F A;  1Z9D A;  2IJ9 A;  3NWY A;  2BND A;  2J4J A;  4NDP B;  2W21 A;  3EK5 A;  3D2P A;  3ZZI A;  3QUN A;  4NDQ A;  2V4Y A;  3LL9 A;  2J0X A;  4A7W A;  4A7X A;  1B7B A;  3K4O A;  2BMU A;  3B8G A;  2R98 A;  2JI5 A;  3K56 A;  2JJ4 A;  3QUO A;  4NDO A;  4F6T B;  2V5H A;  3U6U A;  1E19 A;  2X2W A;  2HMF A;  2BUF A;  2J4K A;  3QVF A;  3QVH A;  1GSJ A;  2J0W A;  4JZ9 A;  3QUR A;  2J4L A;  3EK6 A;  2OGX A;  4NDR B;  2RD5 A;  4AB7 A;  4JZ8 A;  2BNF A;  2WE4 A;  3C1M A;  3D41 A;  4NDO B;  2CDQ A;  4Q1T A;  3C20 A;  3D40 A;  4NDP A;  2J5T A;  3AAW A;  4USJ A;  1OH9 A;  2WXB A;  4I49 A;  1YBD A;  4OLC A;  4NDQ B;  1OHB A;  4F6T A;  3ZZH A;  2WE5 A;  2R8V A;  3C1N A;  2VA1 A;  3S6G A;  3ZZF A;  3LL5 A;  2J5V A;  4JZ7 A;  2BTY A;  3AB2 A;  3S6H A; 
#chains in the Genus database with same CATH topology
 2AKO A;  4KZT A;  4AXS A;  4NDR A;  3TVI A;  3KZF A;  2JJX A;  1GS5 A;  3K4Y A;  3S6K A;  2E9Y A;  3AB4 A;  2AP9 A;  2OGX B;  2BRI A;  3ZZG A;  2BNE A;  3L86 A;  3WWN A;  3K52 A;  3WWM A;  2BRX A;  3LKK A;  3D2M A;  3T7B A;  1OHA A;  3L76 A;  2A1F A;  1Z9D A;  2IJ9 A;  3NWY A;  2BND A;  2J4J A;  4NDP B;  2W21 A;  3EK5 A;  3D2P A;  3ZZI A;  3QUN A;  4NDQ A;  2V4Y A;  3LL9 A;  2J0X A;  4A7W A;  4A7X A;  1B7B A;  3K4O A;  2BMU A;  3B8G A;  2R98 A;  2JI5 A;  3K56 A;  2JJ4 A;  3QUO A;  4NDO A;  4F6T B;  2V5H A;  3U6U A;  1E19 A;  2X2W A;  2HMF A;  2BUF A;  2J4K A;  3QVF A;  3QVH A;  1GSJ A;  2J0W A;  4JZ9 A;  3QUR A;  2J4L A;  3EK6 A;  2OGX A;  4NDR B;  2RD5 A;  4AB7 A;  4JZ8 A;  2BNF A;  2WE4 A;  3C1M A;  3D41 A;  4NDO B;  2CDQ A;  4Q1T A;  3C20 A;  3D40 A;  4NDP A;  2J5T A;  3AAW A;  4USJ A;  1OH9 A;  2WXB A;  4I49 A;  1YBD A;  4OLC A;  4NDQ B;  1OHB A;  4F6T A;  3ZZH A;  2WE5 A;  2R8V A;  3C1N A;  2VA1 A;  3S6G A;  3ZZF A;  3LL5 A;  2J5V A;  4JZ7 A;  2BTY A;  3AB2 A;  3S6H A; 
#chains in the Genus database with same CATH homology
 2AKO A;  4KZT A;  4AXS A;  4NDR A;  3TVI A;  3KZF A;  2JJX A;  1GS5 A;  3K4Y A;  3S6K A;  2E9Y A;  3AB4 A;  2AP9 A;  2OGX B;  2BRI A;  3ZZG A;  2BNE A;  3L86 A;  3WWN A;  3K52 A;  3WWM A;  2BRX A;  3LKK A;  3D2M A;  3T7B A;  1OHA A;  3L76 A;  2A1F A;  1Z9D A;  2IJ9 A;  3NWY A;  2BND A;  2J4J A;  4NDP B;  2W21 A;  3EK5 A;  3D2P A;  3ZZI A;  3QUN A;  4NDQ A;  2V4Y A;  3LL9 A;  2J0X A;  4A7W A;  4A7X A;  1B7B A;  3K4O A;  2BMU A;  3B8G A;  2R98 A;  2JI5 A;  3K56 A;  2JJ4 A;  3QUO A;  4NDO A;  4F6T B;  2V5H A;  3U6U A;  1E19 A;  2X2W A;  2HMF A;  2BUF A;  2J4K A;  3QVF A;  3QVH A;  1GSJ A;  2J0W A;  4JZ9 A;  3QUR A;  2J4L A;  3EK6 A;  2OGX A;  4NDR B;  2RD5 A;  4AB7 A;  4JZ8 A;  2BNF A;  2WE4 A;  3C1M A;  3D41 A;  4NDO B;  2CDQ A;  4Q1T A;  3C20 A;  3D40 A;  4NDP A;  2J5T A;  3AAW A;  4USJ A;  1OH9 A;  2WXB A;  4I49 A;  1YBD A;  4OLC A;  4NDQ B;  1OHB A;  4F6T A;  3ZZH A;  2WE5 A;  2R8V A;  3C1N A;  2VA1 A;  3S6G A;  3ZZF A;  3LL5 A;  2J5V A;  4JZ7 A;  2BTY A;  3AB2 A;  3S6H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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