2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
source organism Pyrococcus furiosus
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
4KZTA 3C1NA 3K52A 3K4OA 3S6HA 1Z9DA 2JJ4A 3K56A 3LKKA 1GS5A 3QUNA 2OGXB 4OLCA 2E9YA 3AB4A 4JZ7A 2J4LA 2A1FA 4A7XA 4NDPB 2CDQA 3B8GA 4NDOB 3EK5A 4F6TA 2VA1A 2HMFA 2BRXA 2R8VA 3NWYA 1OH9A 4AXSA 3T7BA 2R98A 3QVHA 4JZ8A 3C20A 3L76A 4NDQA 2WE4A 2WXBA 3D2PA 2W21A 3AAWA 2JJXA 2JI5A 1E19A 4I49A 2AKOA 3C1MA 1OHAA 2BRIA 2WE5A 4NDRA 2J0XA 2BTYA 2RD5A 3S6KA 2J0WA 3S6GA 3U6UA 1OHBA 2OGXA 4A7WA 4F6TB 3TVIA 3AB2A 3ZZFA 3LL9A 2AP9A 2IJ9A 4AB7A 3L86A 2V5HA 3QUOA 2BMUA 3D41A 4NDQB 3D2MA 3ZZHA 2J5TA 4USJA 2BNEA 1B7BA 3ZZIA 2BNDA 4NDRB 2X2WA 3D40A 3WWMA 4Q1TA 3K4YA 3KZFA 3QVFA 2J4KA 1YBDA 2V4YA 3LL5A 4NDPA 3EK6A 1GSJA 3WWNA 4JZ9A 4NDOA 2J5VA 2BNFA 2BUFA 3ZZGA 3QURA 2J4JA
chains in the Genus database with same CATH superfamily
4KZTA 3C1NA 3K52A 3K4OA 3S6HA 1Z9DA 2JJ4A 3K56A 3LKKA 1GS5A 3QUNA 2OGXB 4OLCA 2E9YA 3AB4A 4JZ7A 2J4LA 2A1FA 4A7XA 4NDPB 2CDQA 3B8GA 4NDOB 3EK5A 4F6TA 2VA1A 2HMFA 2BRXA 2R8VA 3NWYA 1OH9A 4AXSA 3T7BA 2R98A 3QVHA 4JZ8A 3C20A 3L76A 4NDQA 2WE4A 2WXBA 3D2PA 2W21A 3AAWA 2JJXA 2JI5A 1E19A 4I49A 2AKOA 3C1MA 1OHAA 2BRIA 2WE5A 4NDRA 2J0XA 2BTYA 2RD5A 3S6KA 2J0WA 3S6GA 3U6UA 1OHBA 2OGXA 4A7WA 4F6TB 3TVIA 3AB2A 3ZZFA 3LL9A 2AP9A 2IJ9A 4AB7A 3L86A 2V5HA 3QUOA 2BMUA 3D41A 4NDQB 3D2MA 3ZZHA 2J5TA 4USJA 2BNEA 1B7BA 3ZZIA 2BNDA 4NDRB 2X2WA 3D40A 3WWMA 4Q1TA 3K4YA 3KZFA 3QVFA 2J4KA 1YBDA 2V4YA 3LL5A 4NDPA 3EK6A 1GSJA 3WWNA 4JZ9A 4NDOA 2J5VA 2BNFA 2BUFA 3ZZGA 3QURA 2J4JA
chains in the Genus database with same CATH topology
4KZTA 3C1NA 3K52A 3K4OA 3S6HA 1Z9DA 2JJ4A 3K56A 3LKKA 1GS5A 3QUNA 2OGXB 4OLCA 2E9YA 3AB4A 4JZ7A 2J4LA 2A1FA 4A7XA 4NDPB 2CDQA 3B8GA 4NDOB 3EK5A 4F6TA 2VA1A 2HMFA 2BRXA 2R8VA 3NWYA 1OH9A 4AXSA 3T7BA 2R98A 3QVHA 4JZ8A 3C20A 3L76A 4NDQA 2WE4A 2WXBA 3D2PA 2W21A 3AAWA 2JJXA 2JI5A 1E19A 4I49A 2AKOA 3C1MA 1OHAA 2BRIA 2WE5A 4NDRA 2J0XA 2BTYA 2RD5A 3S6KA 2J0WA 3S6GA 3U6UA 1OHBA 2OGXA 4A7WA 4F6TB 3TVIA 3AB2A 3ZZFA 3LL9A 2AP9A 2IJ9A 4AB7A 3L86A 2V5HA 3QUOA 2BMUA 3D41A 4NDQB 3D2MA 3ZZHA 2J5TA 4USJA 2BNEA 1B7BA 3ZZIA 2BNDA 4NDRB 2X2WA 3D40A 3WWMA 4Q1TA 3K4YA 3KZFA 3QVFA 2J4KA 1YBDA 2V4YA 3LL5A 4NDPA 3EK6A 1GSJA 3WWNA 4JZ9A 4NDOA 2J5VA 2BNFA 2BUFA 3ZZGA 3QURA 2J4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KZT A;  3C1N A;  3K52 A;  3K4O A;  3S6H A;  1Z9D A;  2JJ4 A;  3K56 A;  3LKK A;  1GS5 A;  3QUN A;  2OGX B;  4OLC A;  2E9Y A;  3AB4 A;  4JZ7 A;  2J4L A;  2A1F A;  4A7X A;  4NDP B;  2CDQ A;  3B8G A;  4NDO B;  3EK5 A;  4F6T A;  2VA1 A;  2HMF A;  2BRX A;  2R8V A;  3NWY A;  1OH9 A;  4AXS A;  3T7B A;  2R98 A;  3QVH A;  4JZ8 A;  3C20 A;  3L76 A;  4NDQ A;  2WE4 A;  2WXB A;  3D2P A;  2W21 A;  3AAW A;  2JJX A;  2JI5 A;  1E19 A;  4I49 A;  2AKO A;  3C1M A;  1OHA A;  2BRI A;  2WE5 A;  4NDR A;  2J0X A;  2BTY A;  2RD5 A;  3S6K A;  2J0W A;  3S6G A;  3U6U A;  1OHB A;  2OGX A;  4A7W A;  4F6T B;  3TVI A;  3AB2 A;  3ZZF A;  3LL9 A;  2AP9 A;  2IJ9 A;  4AB7 A;  3L86 A;  2V5H A;  3QUO A;  2BMU A;  3D41 A;  4NDQ B;  3D2M A;  3ZZH A;  2J5T A;  4USJ A;  2BNE A;  1B7B A;  3ZZI A;  2BND A;  4NDR B;  2X2W A;  3D40 A;  3WWM A;  4Q1T A;  3K4Y A;  3KZF A;  3QVF A;  2J4K A;  1YBD A;  2V4Y A;  3LL5 A;  4NDP A;  3EK6 A;  1GSJ A;  3WWN A;  4JZ9 A;  4NDO A;  2J5V A;  2BNF A;  2BUF A;  3ZZG A;  3QUR A;  2J4J A; 
#chains in the Genus database with same CATH topology
 4KZT A;  3C1N A;  3K52 A;  3K4O A;  3S6H A;  1Z9D A;  2JJ4 A;  3K56 A;  3LKK A;  1GS5 A;  3QUN A;  2OGX B;  4OLC A;  2E9Y A;  3AB4 A;  4JZ7 A;  2J4L A;  2A1F A;  4A7X A;  4NDP B;  2CDQ A;  3B8G A;  4NDO B;  3EK5 A;  4F6T A;  2VA1 A;  2HMF A;  2BRX A;  2R8V A;  3NWY A;  1OH9 A;  4AXS A;  3T7B A;  2R98 A;  3QVH A;  4JZ8 A;  3C20 A;  3L76 A;  4NDQ A;  2WE4 A;  2WXB A;  3D2P A;  2W21 A;  3AAW A;  2JJX A;  2JI5 A;  1E19 A;  4I49 A;  2AKO A;  3C1M A;  1OHA A;  2BRI A;  2WE5 A;  4NDR A;  2J0X A;  2BTY A;  2RD5 A;  3S6K A;  2J0W A;  3S6G A;  3U6U A;  1OHB A;  2OGX A;  4A7W A;  4F6T B;  3TVI A;  3AB2 A;  3ZZF A;  3LL9 A;  2AP9 A;  2IJ9 A;  4AB7 A;  3L86 A;  2V5H A;  3QUO A;  2BMU A;  3D41 A;  4NDQ B;  3D2M A;  3ZZH A;  2J5T A;  4USJ A;  2BNE A;  1B7B A;  3ZZI A;  2BND A;  4NDR B;  2X2W A;  3D40 A;  3WWM A;  4Q1T A;  3K4Y A;  3KZF A;  3QVF A;  2J4K A;  1YBD A;  2V4Y A;  3LL5 A;  4NDP A;  3EK6 A;  1GSJ A;  3WWN A;  4JZ9 A;  4NDO A;  2J5V A;  2BNF A;  2BUF A;  3ZZG A;  3QUR A;  2J4J A; 
#chains in the Genus database with same CATH homology
 4KZT A;  3C1N A;  3K52 A;  3K4O A;  3S6H A;  1Z9D A;  2JJ4 A;  3K56 A;  3LKK A;  1GS5 A;  3QUN A;  2OGX B;  4OLC A;  2E9Y A;  3AB4 A;  4JZ7 A;  2J4L A;  2A1F A;  4A7X A;  4NDP B;  2CDQ A;  3B8G A;  4NDO B;  3EK5 A;  4F6T A;  2VA1 A;  2HMF A;  2BRX A;  2R8V A;  3NWY A;  1OH9 A;  4AXS A;  3T7B A;  2R98 A;  3QVH A;  4JZ8 A;  3C20 A;  3L76 A;  4NDQ A;  2WE4 A;  2WXB A;  3D2P A;  2W21 A;  3AAW A;  2JJX A;  2JI5 A;  1E19 A;  4I49 A;  2AKO A;  3C1M A;  1OHA A;  2BRI A;  2WE5 A;  4NDR A;  2J0X A;  2BTY A;  2RD5 A;  3S6K A;  2J0W A;  3S6G A;  3U6U A;  1OHB A;  2OGX A;  4A7W A;  4F6T B;  3TVI A;  3AB2 A;  3ZZF A;  3LL9 A;  2AP9 A;  2IJ9 A;  4AB7 A;  3L86 A;  2V5H A;  3QUO A;  2BMU A;  3D41 A;  4NDQ B;  3D2M A;  3ZZH A;  2J5T A;  4USJ A;  2BNE A;  1B7B A;  3ZZI A;  2BND A;  4NDR B;  2X2W A;  3D40 A;  3WWM A;  4Q1T A;  3K4Y A;  3KZF A;  3QVF A;  2J4K A;  1YBD A;  2V4Y A;  3LL5 A;  4NDP A;  3EK6 A;  1GSJ A;  3WWN A;  4JZ9 A;  4NDO A;  2J5V A;  2BNF A;  2BUF A;  3ZZG A;  3QUR A;  2J4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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