2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
source organism Pyrococcus furiosus
molecule tags Transferase
molecule keywords URIDYLATE KINASE
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
3AB4A 2J5TA 3C20A 1YBDA 3S6GA 3U6UA 2RD5A 3QUOA 3S6HA 2V5HA 3K4YA 3LL9A 3T7BA 3ZZIA 3K4OA 1B7BA 2J4LA 3ZZGA 2VA1A 4A7XA 3AAWA 3QURA 2R98A 4F6TA 2BNEA 3C1NA 1GS5A 3EK6A 3ZZFA 2OGXB 1OHAA 3WWMA 3C1MA 1GSJA 3D2PA 4Q1TA 2A1FA 2V4YA 3ZZHA 4AB7A 4NDPA 3L86A 3K56A 3L76A 1OH9A 3LL5A 1E19A 3D2MA 3NWYA 2R8VA 2E9YA 2BNFA 4NDQB 2BUFA 3QUNA 3EK5A 2BRXA 4AXSA 4NDOA 1OHBA 2AKOA 4JZ8A 2J4KA 2IJ9A 3WWNA 3B8GA 4NDRA 4OLCA 2WE4A 2J0XA 4USJA 2W21A 3LKKA 4NDOB 3D40A 2HMFA 3TVIA 3D41A 4NDRB 2X2WA 2JI5A 1Z9DA 2BNDA 4F6TB 3S6KA 3QVHA 4JZ7A 2WXBA 2CDQA 3QVFA 2OGXA 4I49A 2BMUA 2J0WA 4A7WA 2JJXA 2WE5A 4NDPB 3KZFA 4KZTA 2J4JA 3K52A 2JJ4A 2AP9A 4NDQA 2BRIA 2J5VA 3AB2A 4JZ9A 2BTYA
chains in the Genus database with same CATH superfamily
3AB4A 2J5TA 3C20A 1YBDA 3S6GA 3U6UA 2RD5A 3QUOA 3S6HA 2V5HA 3K4YA 3LL9A 3T7BA 3ZZIA 3K4OA 1B7BA 2J4LA 3ZZGA 2VA1A 4A7XA 3AAWA 3QURA 2R98A 4F6TA 2BNEA 3C1NA 1GS5A 3EK6A 3ZZFA 2OGXB 1OHAA 3WWMA 3C1MA 1GSJA 3D2PA 4Q1TA 2A1FA 2V4YA 3ZZHA 4AB7A 4NDPA 3L86A 3K56A 3L76A 1OH9A 3LL5A 1E19A 3D2MA 3NWYA 2R8VA 2E9YA 2BNFA 4NDQB 2BUFA 3QUNA 3EK5A 2BRXA 4AXSA 4NDOA 1OHBA 2AKOA 4JZ8A 2J4KA 2IJ9A 3WWNA 3B8GA 4NDRA 4OLCA 2WE4A 2J0XA 4USJA 2W21A 3LKKA 4NDOB 3D40A 2HMFA 3TVIA 3D41A 4NDRB 2X2WA 2JI5A 1Z9DA 2BNDA 4F6TB 3S6KA 3QVHA 4JZ7A 2WXBA 2CDQA 3QVFA 2OGXA 4I49A 2BMUA 2J0WA 4A7WA 2JJXA 2WE5A 4NDPB 3KZFA 4KZTA 2J4JA 3K52A 2JJ4A 2AP9A 4NDQA 2BRIA 2J5VA 3AB2A 4JZ9A 2BTYA
chains in the Genus database with same CATH topology
3AB4A 2J5TA 3C20A 1YBDA 3S6GA 3U6UA 2RD5A 3QUOA 3S6HA 2V5HA 3K4YA 3LL9A 3T7BA 3ZZIA 3K4OA 1B7BA 2J4LA 3ZZGA 2VA1A 4A7XA 3AAWA 3QURA 2R98A 4F6TA 2BNEA 3C1NA 1GS5A 3EK6A 3ZZFA 2OGXB 1OHAA 3WWMA 3C1MA 1GSJA 3D2PA 4Q1TA 2A1FA 2V4YA 3ZZHA 4AB7A 4NDPA 3L86A 3K56A 3L76A 1OH9A 3LL5A 1E19A 3D2MA 3NWYA 2R8VA 2E9YA 2BNFA 4NDQB 2BUFA 3QUNA 3EK5A 2BRXA 4AXSA 4NDOA 1OHBA 2AKOA 4JZ8A 2J4KA 2IJ9A 3WWNA 3B8GA 4NDRA 4OLCA 2WE4A 2J0XA 4USJA 2W21A 3LKKA 4NDOB 3D40A 2HMFA 3TVIA 3D41A 4NDRB 2X2WA 2JI5A 1Z9DA 2BNDA 4F6TB 3S6KA 3QVHA 4JZ7A 2WXBA 2CDQA 3QVFA 2OGXA 4I49A 2BMUA 2J0WA 4A7WA 2JJXA 2WE5A 4NDPB 3KZFA 4KZTA 2J4JA 3K52A 2JJ4A 2AP9A 4NDQA 2BRIA 2J5VA 3AB2A 4JZ9A 2BTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AB4 A;  2J5T A;  3C20 A;  1YBD A;  3S6G A;  3U6U A;  2RD5 A;  3QUO A;  3S6H A;  2V5H A;  3K4Y A;  3LL9 A;  3T7B A;  3ZZI A;  3K4O A;  1B7B A;  2J4L A;  3ZZG A;  2VA1 A;  4A7X A;  3AAW A;  3QUR A;  2R98 A;  4F6T A;  2BNE A;  3C1N A;  1GS5 A;  3EK6 A;  3ZZF A;  2OGX B;  1OHA A;  3WWM A;  3C1M A;  1GSJ A;  3D2P A;  4Q1T A;  2A1F A;  2V4Y A;  3ZZH A;  4AB7 A;  4NDP A;  3L86 A;  3K56 A;  3L76 A;  1OH9 A;  3LL5 A;  1E19 A;  3D2M A;  3NWY A;  2R8V A;  2E9Y A;  2BNF A;  4NDQ B;  2BUF A;  3QUN A;  3EK5 A;  2BRX A;  4AXS A;  4NDO A;  1OHB A;  2AKO A;  4JZ8 A;  2J4K A;  2IJ9 A;  3WWN A;  3B8G A;  4NDR A;  4OLC A;  2WE4 A;  2J0X A;  4USJ A;  2W21 A;  3LKK A;  4NDO B;  3D40 A;  2HMF A;  3TVI A;  3D41 A;  4NDR B;  2X2W A;  2JI5 A;  1Z9D A;  2BND A;  4F6T B;  3S6K A;  3QVH A;  4JZ7 A;  2WXB A;  2CDQ A;  3QVF A;  2OGX A;  4I49 A;  2BMU A;  2J0W A;  4A7W A;  2JJX A;  2WE5 A;  4NDP B;  3KZF A;  4KZT A;  2J4J A;  3K52 A;  2JJ4 A;  2AP9 A;  4NDQ A;  2BRI A;  2J5V A;  3AB2 A;  4JZ9 A;  2BTY A; 
#chains in the Genus database with same CATH topology
 3AB4 A;  2J5T A;  3C20 A;  1YBD A;  3S6G A;  3U6U A;  2RD5 A;  3QUO A;  3S6H A;  2V5H A;  3K4Y A;  3LL9 A;  3T7B A;  3ZZI A;  3K4O A;  1B7B A;  2J4L A;  3ZZG A;  2VA1 A;  4A7X A;  3AAW A;  3QUR A;  2R98 A;  4F6T A;  2BNE A;  3C1N A;  1GS5 A;  3EK6 A;  3ZZF A;  2OGX B;  1OHA A;  3WWM A;  3C1M A;  1GSJ A;  3D2P A;  4Q1T A;  2A1F A;  2V4Y A;  3ZZH A;  4AB7 A;  4NDP A;  3L86 A;  3K56 A;  3L76 A;  1OH9 A;  3LL5 A;  1E19 A;  3D2M A;  3NWY A;  2R8V A;  2E9Y A;  2BNF A;  4NDQ B;  2BUF A;  3QUN A;  3EK5 A;  2BRX A;  4AXS A;  4NDO A;  1OHB A;  2AKO A;  4JZ8 A;  2J4K A;  2IJ9 A;  3WWN A;  3B8G A;  4NDR A;  4OLC A;  2WE4 A;  2J0X A;  4USJ A;  2W21 A;  3LKK A;  4NDO B;  3D40 A;  2HMF A;  3TVI A;  3D41 A;  4NDR B;  2X2W A;  2JI5 A;  1Z9D A;  2BND A;  4F6T B;  3S6K A;  3QVH A;  4JZ7 A;  2WXB A;  2CDQ A;  3QVF A;  2OGX A;  4I49 A;  2BMU A;  2J0W A;  4A7W A;  2JJX A;  2WE5 A;  4NDP B;  3KZF A;  4KZT A;  2J4J A;  3K52 A;  2JJ4 A;  2AP9 A;  4NDQ A;  2BRI A;  2J5V A;  3AB2 A;  4JZ9 A;  2BTY A; 
#chains in the Genus database with same CATH homology
 3AB4 A;  2J5T A;  3C20 A;  1YBD A;  3S6G A;  3U6U A;  2RD5 A;  3QUO A;  3S6H A;  2V5H A;  3K4Y A;  3LL9 A;  3T7B A;  3ZZI A;  3K4O A;  1B7B A;  2J4L A;  3ZZG A;  2VA1 A;  4A7X A;  3AAW A;  3QUR A;  2R98 A;  4F6T A;  2BNE A;  3C1N A;  1GS5 A;  3EK6 A;  3ZZF A;  2OGX B;  1OHA A;  3WWM A;  3C1M A;  1GSJ A;  3D2P A;  4Q1T A;  2A1F A;  2V4Y A;  3ZZH A;  4AB7 A;  4NDP A;  3L86 A;  3K56 A;  3L76 A;  1OH9 A;  3LL5 A;  1E19 A;  3D2M A;  3NWY A;  2R8V A;  2E9Y A;  2BNF A;  4NDQ B;  2BUF A;  3QUN A;  3EK5 A;  2BRX A;  4AXS A;  4NDO A;  1OHB A;  2AKO A;  4JZ8 A;  2J4K A;  2IJ9 A;  3WWN A;  3B8G A;  4NDR A;  4OLC A;  2WE4 A;  2J0X A;  4USJ A;  2W21 A;  3LKK A;  4NDO B;  3D40 A;  2HMF A;  3TVI A;  3D41 A;  4NDR B;  2X2W A;  2JI5 A;  1Z9D A;  2BND A;  4F6T B;  3S6K A;  3QVH A;  4JZ7 A;  2WXB A;  2CDQ A;  3QVF A;  2OGX A;  4I49 A;  2BMU A;  2J0W A;  4A7W A;  2JJX A;  2WE5 A;  4NDP B;  3KZF A;  4KZT A;  2J4J A;  3K52 A;  2JJ4 A;  2AP9 A;  4NDQ A;  2BRI A;  2J5V A;  3AB2 A;  4JZ9 A;  2BTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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