2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
b'SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
source organism Pyrococcus furiosus
molecule tags Transferase
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
4NDOB 2AP9A 3K56A 3TVIA 4AB7A 1B7BA 2BNFA 3NWYA 2J5VA 2OGXB 3S6KA 3EK5A 3QURA 2JI5A 2J4JA 3QVHA 3AAWA 1Z9DA 3ZZFA 2J0XA 4F6TA 3QUNA 2WE4A 2BRXA 3S6HA 2A1FA 2BNEA 3EK6A 3LL5A 4AXSA 2JJXA 3AB2A 3U6UA 2J5TA 3K4YA 3WWNA 4NDPA 4A7XA 4F6TB 3ZZIA 2E9YA 2CDQA 3AB4A 1OHAA 2AKOA 2J4LA 3L86A 3D41A 3K52A 3WWMA 3B8GA 4JZ8A 4NDQB 2BTYA 2VA1A 4I49A 1OH9A 1OHBA 3K4OA 2BNDA 3ZZGA 2R98A 3QUOA 2W21A 3C20A 2RD5A 3LKKA 2J0WA 2BMUA 2V4YA 4NDRA 3D2PA 4NDPB 1GSJA 2J4KA 2WXBA 3ZZHA 1GS5A 4USJA 4NDOA 2IJ9A 3D40A 3KZFA 1YBDA 3L76A 3S6GA 3T7BA 2BUFA 2HMFA 3C1MA 3D2MA 4OLCA 2X2WA 1E19A 4JZ9A 4KZTA 4A7WA 3QVFA 4Q1TA 4NDRB 3C1NA 2BRIA 2R8VA 2V5HA 3LL9A 2WE5A 4NDQA 2OGXA 2JJ4A 4JZ7A
chains in the Genus database with same CATH superfamily
4NDOB 2AP9A 3K56A 3TVIA 4AB7A 1B7BA 2BNFA 3NWYA 2J5VA 2OGXB 3S6KA 3EK5A 3QURA 2JI5A 2J4JA 3QVHA 3AAWA 1Z9DA 3ZZFA 2J0XA 4F6TA 3QUNA 2WE4A 2BRXA 3S6HA 2A1FA 2BNEA 3EK6A 3LL5A 4AXSA 2JJXA 3AB2A 3U6UA 2J5TA 3K4YA 3WWNA 4NDPA 4A7XA 4F6TB 3ZZIA 2E9YA 2CDQA 3AB4A 1OHAA 2AKOA 2J4LA 3L86A 3D41A 3K52A 3WWMA 3B8GA 4JZ8A 4NDQB 2BTYA 2VA1A 4I49A 1OH9A 1OHBA 3K4OA 2BNDA 3ZZGA 2R98A 3QUOA 2W21A 3C20A 2RD5A 3LKKA 2J0WA 2BMUA 2V4YA 4NDRA 3D2PA 4NDPB 1GSJA 2J4KA 2WXBA 3ZZHA 1GS5A 4USJA 4NDOA 2IJ9A 3D40A 3KZFA 1YBDA 3L76A 3S6GA 3T7BA 2BUFA 2HMFA 3C1MA 3D2MA 4OLCA 2X2WA 1E19A 4JZ9A 4KZTA 4A7WA 3QVFA 4Q1TA 4NDRB 3C1NA 2BRIA 2R8VA 2V5HA 3LL9A 2WE5A 4NDQA 2OGXA 2JJ4A 4JZ7A
chains in the Genus database with same CATH topology
4NDOB 2AP9A 3K56A 3TVIA 4AB7A 1B7BA 2BNFA 3NWYA 2J5VA 2OGXB 3S6KA 3EK5A 3QURA 2JI5A 2J4JA 3QVHA 3AAWA 1Z9DA 3ZZFA 2J0XA 4F6TA 3QUNA 2WE4A 2BRXA 3S6HA 2A1FA 2BNEA 3EK6A 3LL5A 4AXSA 2JJXA 3AB2A 3U6UA 2J5TA 3K4YA 3WWNA 4NDPA 4A7XA 4F6TB 3ZZIA 2E9YA 2CDQA 3AB4A 1OHAA 2AKOA 2J4LA 3L86A 3D41A 3K52A 3WWMA 3B8GA 4JZ8A 4NDQB 2BTYA 2VA1A 4I49A 1OH9A 1OHBA 3K4OA 2BNDA 3ZZGA 2R98A 3QUOA 2W21A 3C20A 2RD5A 3LKKA 2J0WA 2BMUA 2V4YA 4NDRA 3D2PA 4NDPB 1GSJA 2J4KA 2WXBA 3ZZHA 1GS5A 4USJA 4NDOA 2IJ9A 3D40A 3KZFA 1YBDA 3L76A 3S6GA 3T7BA 2BUFA 2HMFA 3C1MA 3D2MA 4OLCA 2X2WA 1E19A 4JZ9A 4KZTA 4A7WA 3QVFA 4Q1TA 4NDRB 3C1NA 2BRIA 2R8VA 2V5HA 3LL9A 2WE5A 4NDQA 2OGXA 2JJ4A 4JZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDO B;  2AP9 A;  3K56 A;  3TVI A;  4AB7 A;  1B7B A;  2BNF A;  3NWY A;  2J5V A;  2OGX B;  3S6K A;  3EK5 A;  3QUR A;  2JI5 A;  2J4J A;  3QVH A;  3AAW A;  1Z9D A;  3ZZF A;  2J0X A;  4F6T A;  3QUN A;  2WE4 A;  2BRX A;  3S6H A;  2A1F A;  2BNE A;  3EK6 A;  3LL5 A;  4AXS A;  2JJX A;  3AB2 A;  3U6U A;  2J5T A;  3K4Y A;  3WWN A;  4NDP A;  4A7X A;  4F6T B;  3ZZI A;  2E9Y A;  2CDQ A;  3AB4 A;  1OHA A;  2AKO A;  2J4L A;  3L86 A;  3D41 A;  3K52 A;  3WWM A;  3B8G A;  4JZ8 A;  4NDQ B;  2BTY A;  2VA1 A;  4I49 A;  1OH9 A;  1OHB A;  3K4O A;  2BND A;  3ZZG A;  2R98 A;  3QUO A;  2W21 A;  3C20 A;  2RD5 A;  3LKK A;  2J0W A;  2BMU A;  2V4Y A;  4NDR A;  3D2P A;  4NDP B;  1GSJ A;  2J4K A;  2WXB A;  3ZZH A;  1GS5 A;  4USJ A;  4NDO A;  2IJ9 A;  3D40 A;  3KZF A;  1YBD A;  3L76 A;  3S6G A;  3T7B A;  2BUF A;  2HMF A;  3C1M A;  3D2M A;  4OLC A;  2X2W A;  1E19 A;  4JZ9 A;  4KZT A;  4A7W A;  3QVF A;  4Q1T A;  4NDR B;  3C1N A;  2BRI A;  2R8V A;  2V5H A;  3LL9 A;  2WE5 A;  4NDQ A;  2OGX A;  2JJ4 A;  4JZ7 A; 
#chains in the Genus database with same CATH topology
 4NDO B;  2AP9 A;  3K56 A;  3TVI A;  4AB7 A;  1B7B A;  2BNF A;  3NWY A;  2J5V A;  2OGX B;  3S6K A;  3EK5 A;  3QUR A;  2JI5 A;  2J4J A;  3QVH A;  3AAW A;  1Z9D A;  3ZZF A;  2J0X A;  4F6T A;  3QUN A;  2WE4 A;  2BRX A;  3S6H A;  2A1F A;  2BNE A;  3EK6 A;  3LL5 A;  4AXS A;  2JJX A;  3AB2 A;  3U6U A;  2J5T A;  3K4Y A;  3WWN A;  4NDP A;  4A7X A;  4F6T B;  3ZZI A;  2E9Y A;  2CDQ A;  3AB4 A;  1OHA A;  2AKO A;  2J4L A;  3L86 A;  3D41 A;  3K52 A;  3WWM A;  3B8G A;  4JZ8 A;  4NDQ B;  2BTY A;  2VA1 A;  4I49 A;  1OH9 A;  1OHB A;  3K4O A;  2BND A;  3ZZG A;  2R98 A;  3QUO A;  2W21 A;  3C20 A;  2RD5 A;  3LKK A;  2J0W A;  2BMU A;  2V4Y A;  4NDR A;  3D2P A;  4NDP B;  1GSJ A;  2J4K A;  2WXB A;  3ZZH A;  1GS5 A;  4USJ A;  4NDO A;  2IJ9 A;  3D40 A;  3KZF A;  1YBD A;  3L76 A;  3S6G A;  3T7B A;  2BUF A;  2HMF A;  3C1M A;  3D2M A;  4OLC A;  2X2W A;  1E19 A;  4JZ9 A;  4KZT A;  4A7W A;  3QVF A;  4Q1T A;  4NDR B;  3C1N A;  2BRI A;  2R8V A;  2V5H A;  3LL9 A;  2WE5 A;  4NDQ A;  2OGX A;  2JJ4 A;  4JZ7 A; 
#chains in the Genus database with same CATH homology
 4NDO B;  2AP9 A;  3K56 A;  3TVI A;  4AB7 A;  1B7B A;  2BNF A;  3NWY A;  2J5V A;  2OGX B;  3S6K A;  3EK5 A;  3QUR A;  2JI5 A;  2J4J A;  3QVH A;  3AAW A;  1Z9D A;  3ZZF A;  2J0X A;  4F6T A;  3QUN A;  2WE4 A;  2BRX A;  3S6H A;  2A1F A;  2BNE A;  3EK6 A;  3LL5 A;  4AXS A;  2JJX A;  3AB2 A;  3U6U A;  2J5T A;  3K4Y A;  3WWN A;  4NDP A;  4A7X A;  4F6T B;  3ZZI A;  2E9Y A;  2CDQ A;  3AB4 A;  1OHA A;  2AKO A;  2J4L A;  3L86 A;  3D41 A;  3K52 A;  3WWM A;  3B8G A;  4JZ8 A;  4NDQ B;  2BTY A;  2VA1 A;  4I49 A;  1OH9 A;  1OHB A;  3K4O A;  2BND A;  3ZZG A;  2R98 A;  3QUO A;  2W21 A;  3C20 A;  2RD5 A;  3LKK A;  2J0W A;  2BMU A;  2V4Y A;  4NDR A;  3D2P A;  4NDP B;  1GSJ A;  2J4K A;  2WXB A;  3ZZH A;  1GS5 A;  4USJ A;  4NDO A;  2IJ9 A;  3D40 A;  3KZF A;  1YBD A;  3L76 A;  3S6G A;  3T7B A;  2BUF A;  2HMF A;  3C1M A;  3D2M A;  4OLC A;  2X2W A;  1E19 A;  4JZ9 A;  4KZT A;  4A7W A;  3QVF A;  4Q1T A;  4NDR B;  3C1N A;  2BRI A;  2R8V A;  2V5H A;  3LL9 A;  2WE5 A;  4NDQ A;  2OGX A;  2JJ4 A;  4JZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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