2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Pyrococcus furiosus
publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
molecule keywords URIDYLATE KINASE
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
3K4OA 2A1FA 3S6KA 2BNFA 3QUOA 2OGXB 3K56A 4NDOB 4AXSA 1YBDA 2VA1A 3K52A 3U6UA 4I49A 1E19A 3ZZHA 4Q1TA 4NDPA 4A7WA 2J0WA 3LL9A 2J5VA 1GS5A 3EK6A 4OLCA 4USJA 3EK5A 2V5HA 2R8VA 2J5TA 3C1NA 4NDQA 1B7BA 4AB7A 2J4KA 4NDPB 2AKOA 4NDRB 2JI5A 3AB4A 4KZTA 3S6HA 2BTYA 3TVIA 1Z9DA 3K4YA 4NDQB 1OHBA 2J0XA 3LL5A 1OH9A 3D2MA 4JZ8A 3KZFA 2BNDA 2WXBA 3D41A 2HMFA 3ZZFA 2CDQA 3WWMA 3D2PA 4JZ7A 3S6GA 3L76A 4JZ9A 2IJ9A 2R98A 1OHAA 3AB2A 3QVFA 2X2WA 2BMUA 2JJ4A 2J4LA 2JJXA 3QVHA 3QURA 2RD5A 2BNEA 3ZZGA 2BRIA 4F6TA 3B8GA 3WWNA 3L86A 3T7BA 2BUFA 2J4JA 2W21A 4F6TB 2V4YA 2WE4A 2AP9A 3NWYA 2WE5A 3D40A 4A7XA 2E9YA 3QUNA 4NDOA 3C20A 2BRXA 4NDRA 3ZZIA 3LKKA 3C1MA 2OGXA 3AAWA 1GSJA
chains in the Genus database with same CATH superfamily
3K4OA 2A1FA 3S6KA 2BNFA 3QUOA 2OGXB 3K56A 4NDOB 4AXSA 1YBDA 2VA1A 3K52A 3U6UA 4I49A 1E19A 3ZZHA 4Q1TA 4NDPA 4A7WA 2J0WA 3LL9A 2J5VA 1GS5A 3EK6A 4OLCA 4USJA 3EK5A 2V5HA 2R8VA 2J5TA 3C1NA 4NDQA 1B7BA 4AB7A 2J4KA 4NDPB 2AKOA 4NDRB 2JI5A 3AB4A 4KZTA 3S6HA 2BTYA 3TVIA 1Z9DA 3K4YA 4NDQB 1OHBA 2J0XA 3LL5A 1OH9A 3D2MA 4JZ8A 3KZFA 2BNDA 2WXBA 3D41A 2HMFA 3ZZFA 2CDQA 3WWMA 3D2PA 4JZ7A 3S6GA 3L76A 4JZ9A 2IJ9A 2R98A 1OHAA 3AB2A 3QVFA 2X2WA 2BMUA 2JJ4A 2J4LA 2JJXA 3QVHA 3QURA 2RD5A 2BNEA 3ZZGA 2BRIA 4F6TA 3B8GA 3WWNA 3L86A 3T7BA 2BUFA 2J4JA 2W21A 4F6TB 2V4YA 2WE4A 2AP9A 3NWYA 2WE5A 3D40A 4A7XA 2E9YA 3QUNA 4NDOA 3C20A 2BRXA 4NDRA 3ZZIA 3LKKA 3C1MA 2OGXA 3AAWA 1GSJA
chains in the Genus database with same CATH topology
3K4OA 2A1FA 3S6KA 2BNFA 3QUOA 2OGXB 3K56A 4NDOB 4AXSA 1YBDA 2VA1A 3K52A 3U6UA 4I49A 1E19A 3ZZHA 4Q1TA 4NDPA 4A7WA 2J0WA 3LL9A 2J5VA 1GS5A 3EK6A 4OLCA 4USJA 3EK5A 2V5HA 2R8VA 2J5TA 3C1NA 4NDQA 1B7BA 4AB7A 2J4KA 4NDPB 2AKOA 4NDRB 2JI5A 3AB4A 4KZTA 3S6HA 2BTYA 3TVIA 1Z9DA 3K4YA 4NDQB 1OHBA 2J0XA 3LL5A 1OH9A 3D2MA 4JZ8A 3KZFA 2BNDA 2WXBA 3D41A 2HMFA 3ZZFA 2CDQA 3WWMA 3D2PA 4JZ7A 3S6GA 3L76A 4JZ9A 2IJ9A 2R98A 1OHAA 3AB2A 3QVFA 2X2WA 2BMUA 2JJ4A 2J4LA 2JJXA 3QVHA 3QURA 2RD5A 2BNEA 3ZZGA 2BRIA 4F6TA 3B8GA 3WWNA 3L86A 3T7BA 2BUFA 2J4JA 2W21A 4F6TB 2V4YA 2WE4A 2AP9A 3NWYA 2WE5A 3D40A 4A7XA 2E9YA 3QUNA 4NDOA 3C20A 2BRXA 4NDRA 3ZZIA 3LKKA 3C1MA 2OGXA 3AAWA 1GSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K4O A;  2A1F A;  3S6K A;  2BNF A;  3QUO A;  2OGX B;  3K56 A;  4NDO B;  4AXS A;  1YBD A;  2VA1 A;  3K52 A;  3U6U A;  4I49 A;  1E19 A;  3ZZH A;  4Q1T A;  4NDP A;  4A7W A;  2J0W A;  3LL9 A;  2J5V A;  1GS5 A;  3EK6 A;  4OLC A;  4USJ A;  3EK5 A;  2V5H A;  2R8V A;  2J5T A;  3C1N A;  4NDQ A;  1B7B A;  4AB7 A;  2J4K A;  4NDP B;  2AKO A;  4NDR B;  2JI5 A;  3AB4 A;  4KZT A;  3S6H A;  2BTY A;  3TVI A;  1Z9D A;  3K4Y A;  4NDQ B;  1OHB A;  2J0X A;  3LL5 A;  1OH9 A;  3D2M A;  4JZ8 A;  3KZF A;  2BND A;  2WXB A;  3D41 A;  2HMF A;  3ZZF A;  2CDQ A;  3WWM A;  3D2P A;  4JZ7 A;  3S6G A;  3L76 A;  4JZ9 A;  2IJ9 A;  2R98 A;  1OHA A;  3AB2 A;  3QVF A;  2X2W A;  2BMU A;  2JJ4 A;  2J4L A;  2JJX A;  3QVH A;  3QUR A;  2RD5 A;  2BNE A;  3ZZG A;  2BRI A;  4F6T A;  3B8G A;  3WWN A;  3L86 A;  3T7B A;  2BUF A;  2J4J A;  2W21 A;  4F6T B;  2V4Y A;  2WE4 A;  2AP9 A;  3NWY A;  2WE5 A;  3D40 A;  4A7X A;  2E9Y A;  3QUN A;  4NDO A;  3C20 A;  2BRX A;  4NDR A;  3ZZI A;  3LKK A;  3C1M A;  2OGX A;  3AAW A;  1GSJ A; 
#chains in the Genus database with same CATH topology
 3K4O A;  2A1F A;  3S6K A;  2BNF A;  3QUO A;  2OGX B;  3K56 A;  4NDO B;  4AXS A;  1YBD A;  2VA1 A;  3K52 A;  3U6U A;  4I49 A;  1E19 A;  3ZZH A;  4Q1T A;  4NDP A;  4A7W A;  2J0W A;  3LL9 A;  2J5V A;  1GS5 A;  3EK6 A;  4OLC A;  4USJ A;  3EK5 A;  2V5H A;  2R8V A;  2J5T A;  3C1N A;  4NDQ A;  1B7B A;  4AB7 A;  2J4K A;  4NDP B;  2AKO A;  4NDR B;  2JI5 A;  3AB4 A;  4KZT A;  3S6H A;  2BTY A;  3TVI A;  1Z9D A;  3K4Y A;  4NDQ B;  1OHB A;  2J0X A;  3LL5 A;  1OH9 A;  3D2M A;  4JZ8 A;  3KZF A;  2BND A;  2WXB A;  3D41 A;  2HMF A;  3ZZF A;  2CDQ A;  3WWM A;  3D2P A;  4JZ7 A;  3S6G A;  3L76 A;  4JZ9 A;  2IJ9 A;  2R98 A;  1OHA A;  3AB2 A;  3QVF A;  2X2W A;  2BMU A;  2JJ4 A;  2J4L A;  2JJX A;  3QVH A;  3QUR A;  2RD5 A;  2BNE A;  3ZZG A;  2BRI A;  4F6T A;  3B8G A;  3WWN A;  3L86 A;  3T7B A;  2BUF A;  2J4J A;  2W21 A;  4F6T B;  2V4Y A;  2WE4 A;  2AP9 A;  3NWY A;  2WE5 A;  3D40 A;  4A7X A;  2E9Y A;  3QUN A;  4NDO A;  3C20 A;  2BRX A;  4NDR A;  3ZZI A;  3LKK A;  3C1M A;  2OGX A;  3AAW A;  1GSJ A; 
#chains in the Genus database with same CATH homology
 3K4O A;  2A1F A;  3S6K A;  2BNF A;  3QUO A;  2OGX B;  3K56 A;  4NDO B;  4AXS A;  1YBD A;  2VA1 A;  3K52 A;  3U6U A;  4I49 A;  1E19 A;  3ZZH A;  4Q1T A;  4NDP A;  4A7W A;  2J0W A;  3LL9 A;  2J5V A;  1GS5 A;  3EK6 A;  4OLC A;  4USJ A;  3EK5 A;  2V5H A;  2R8V A;  2J5T A;  3C1N A;  4NDQ A;  1B7B A;  4AB7 A;  2J4K A;  4NDP B;  2AKO A;  4NDR B;  2JI5 A;  3AB4 A;  4KZT A;  3S6H A;  2BTY A;  3TVI A;  1Z9D A;  3K4Y A;  4NDQ B;  1OHB A;  2J0X A;  3LL5 A;  1OH9 A;  3D2M A;  4JZ8 A;  3KZF A;  2BND A;  2WXB A;  3D41 A;  2HMF A;  3ZZF A;  2CDQ A;  3WWM A;  3D2P A;  4JZ7 A;  3S6G A;  3L76 A;  4JZ9 A;  2IJ9 A;  2R98 A;  1OHA A;  3AB2 A;  3QVF A;  2X2W A;  2BMU A;  2JJ4 A;  2J4L A;  2JJX A;  3QVH A;  3QUR A;  2RD5 A;  2BNE A;  3ZZG A;  2BRI A;  4F6T A;  3B8G A;  3WWN A;  3L86 A;  3T7B A;  2BUF A;  2J4J A;  2W21 A;  4F6T B;  2V4Y A;  2WE4 A;  2AP9 A;  3NWY A;  2WE5 A;  3D40 A;  4A7X A;  2E9Y A;  3QUN A;  4NDO A;  3C20 A;  2BRX A;  4NDR A;  3ZZI A;  3LKK A;  3C1M A;  2OGX A;  3AAW A;  1GSJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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