2JI5A

Structure of ump kinase from pyrococcus furiosus complexed with utp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
227
structure length
219
Chain Sequence
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
rcsb
source organism Pyrococcus furiosus
molecule tags Transferase
molecule keywords URIDYLATE KINASE
total genus 78
structure length 219
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ji5A00
3WWMA 3S6GA 2BRXA 4NDRA 2BNDA 2V4YA 3LL5A 3QUNA 3L76A 3WWNA 2BNEA 3ZZFA 2A1FA 2J5VA 2J4JA 2J5TA 2J0WA 2JJXA 2WE5A 4USJA 3D40A 4JZ9A 2W21A 2JI5A 3QUOA 2AKOA 1OH9A 3D2PA 4NDRB 3EK5A 2CDQA 3QURA 3D41A 2E9YA 2IJ9A 1YBDA 2X2WA 2RD5A 2R98A 3C20A 4NDQA 4AXSA 3ZZHA 2WXBA 4NDQB 3ZZGA 2BNFA 2JJ4A 2BUFA 3EK6A 3L86A 3U6UA 4AB7A 4OLCA 4NDPA 1E19A 3NWYA 4F6TB 3C1MA 3QVFA 1GSJA 4NDPB 4NDOB 3TVIA 2HMFA 4NDOA 4A7WA 3KZFA 4I49A 2BTYA 3AB2A 2BMUA 2BRIA 2WE4A 3S6HA 1GS5A 3C1NA 1OHBA 4JZ7A 4JZ8A 2OGXB 4Q1TA 4F6TA 3ZZIA 3K4OA 3AAWA 1Z9DA 3D2MA 4KZTA 3K56A 2J4LA 3LKKA 3QVHA 3S6KA 3K52A 2J4KA 3T7BA 1B7BA 2AP9A 4A7XA 2R8VA 1OHAA 2J0XA 3LL9A 2OGXA 3K4YA 2VA1A 3B8GA 2V5HA 3AB4A
chains in the Genus database with same CATH superfamily
3WWMA 3S6GA 2BRXA 4NDRA 2BNDA 2V4YA 3LL5A 3QUNA 3L76A 3WWNA 2BNEA 3ZZFA 2A1FA 2J5VA 2J4JA 2J5TA 2J0WA 2JJXA 2WE5A 4USJA 3D40A 4JZ9A 2W21A 2JI5A 3QUOA 2AKOA 1OH9A 3D2PA 4NDRB 3EK5A 2CDQA 3QURA 3D41A 2E9YA 2IJ9A 1YBDA 2X2WA 2RD5A 2R98A 3C20A 4NDQA 4AXSA 3ZZHA 2WXBA 4NDQB 3ZZGA 2BNFA 2JJ4A 2BUFA 3EK6A 3L86A 3U6UA 4AB7A 4OLCA 4NDPA 1E19A 3NWYA 4F6TB 3C1MA 3QVFA 1GSJA 4NDPB 4NDOB 3TVIA 2HMFA 4NDOA 4A7WA 3KZFA 4I49A 2BTYA 3AB2A 2BMUA 2BRIA 2WE4A 3S6HA 1GS5A 3C1NA 1OHBA 4JZ7A 4JZ8A 2OGXB 4Q1TA 4F6TA 3ZZIA 3K4OA 3AAWA 1Z9DA 3D2MA 4KZTA 3K56A 2J4LA 3LKKA 3QVHA 3S6KA 3K52A 2J4KA 3T7BA 1B7BA 2AP9A 4A7XA 2R8VA 1OHAA 2J0XA 3LL9A 2OGXA 3K4YA 2VA1A 3B8GA 2V5HA 3AB4A
chains in the Genus database with same CATH topology
3WWMA 3S6GA 2BRXA 4NDRA 2BNDA 2V4YA 3LL5A 3QUNA 3L76A 3WWNA 2BNEA 3ZZFA 2A1FA 2J5VA 2J4JA 2J5TA 2J0WA 2JJXA 2WE5A 4USJA 3D40A 4JZ9A 2W21A 2JI5A 3QUOA 2AKOA 1OH9A 3D2PA 4NDRB 3EK5A 2CDQA 3QURA 3D41A 2E9YA 2IJ9A 1YBDA 2X2WA 2RD5A 2R98A 3C20A 4NDQA 4AXSA 3ZZHA 2WXBA 4NDQB 3ZZGA 2BNFA 2JJ4A 2BUFA 3EK6A 3L86A 3U6UA 4AB7A 4OLCA 4NDPA 1E19A 3NWYA 4F6TB 3C1MA 3QVFA 1GSJA 4NDPB 4NDOB 3TVIA 2HMFA 4NDOA 4A7WA 3KZFA 4I49A 2BTYA 3AB2A 2BMUA 2BRIA 2WE4A 3S6HA 1GS5A 3C1NA 1OHBA 4JZ7A 4JZ8A 2OGXB 4Q1TA 4F6TA 3ZZIA 3K4OA 3AAWA 1Z9DA 3D2MA 4KZTA 3K56A 2J4LA 3LKKA 3QVHA 3S6KA 3K52A 2J4KA 3T7BA 1B7BA 2AP9A 4A7XA 2R8VA 1OHAA 2J0XA 3LL9A 2OGXA 3K4YA 2VA1A 3B8GA 2V5HA 3AB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WWM A;  3S6G A;  2BRX A;  4NDR A;  2BND A;  2V4Y A;  3LL5 A;  3QUN A;  3L76 A;  3WWN A;  2BNE A;  3ZZF A;  2A1F A;  2J5V A;  2J4J A;  2J5T A;  2J0W A;  2JJX A;  2WE5 A;  4USJ A;  3D40 A;  4JZ9 A;  2W21 A;  2JI5 A;  3QUO A;  2AKO A;  1OH9 A;  3D2P A;  4NDR B;  3EK5 A;  2CDQ A;  3QUR A;  3D41 A;  2E9Y A;  2IJ9 A;  1YBD A;  2X2W A;  2RD5 A;  2R98 A;  3C20 A;  4NDQ A;  4AXS A;  3ZZH A;  2WXB A;  4NDQ B;  3ZZG A;  2BNF A;  2JJ4 A;  2BUF A;  3EK6 A;  3L86 A;  3U6U A;  4AB7 A;  4OLC A;  4NDP A;  1E19 A;  3NWY A;  4F6T B;  3C1M A;  3QVF A;  1GSJ A;  4NDP B;  4NDO B;  3TVI A;  2HMF A;  4NDO A;  4A7W A;  3KZF A;  4I49 A;  2BTY A;  3AB2 A;  2BMU A;  2BRI A;  2WE4 A;  3S6H A;  1GS5 A;  3C1N A;  1OHB A;  4JZ7 A;  4JZ8 A;  2OGX B;  4Q1T A;  4F6T A;  3ZZI A;  3K4O A;  3AAW A;  1Z9D A;  3D2M A;  4KZT A;  3K56 A;  2J4L A;  3LKK A;  3QVH A;  3S6K A;  3K52 A;  2J4K A;  3T7B A;  1B7B A;  2AP9 A;  4A7X A;  2R8V A;  1OHA A;  2J0X A;  3LL9 A;  2OGX A;  3K4Y A;  2VA1 A;  3B8G A;  2V5H A;  3AB4 A; 
#chains in the Genus database with same CATH topology
 3WWM A;  3S6G A;  2BRX A;  4NDR A;  2BND A;  2V4Y A;  3LL5 A;  3QUN A;  3L76 A;  3WWN A;  2BNE A;  3ZZF A;  2A1F A;  2J5V A;  2J4J A;  2J5T A;  2J0W A;  2JJX A;  2WE5 A;  4USJ A;  3D40 A;  4JZ9 A;  2W21 A;  2JI5 A;  3QUO A;  2AKO A;  1OH9 A;  3D2P A;  4NDR B;  3EK5 A;  2CDQ A;  3QUR A;  3D41 A;  2E9Y A;  2IJ9 A;  1YBD A;  2X2W A;  2RD5 A;  2R98 A;  3C20 A;  4NDQ A;  4AXS A;  3ZZH A;  2WXB A;  4NDQ B;  3ZZG A;  2BNF A;  2JJ4 A;  2BUF A;  3EK6 A;  3L86 A;  3U6U A;  4AB7 A;  4OLC A;  4NDP A;  1E19 A;  3NWY A;  4F6T B;  3C1M A;  3QVF A;  1GSJ A;  4NDP B;  4NDO B;  3TVI A;  2HMF A;  4NDO A;  4A7W A;  3KZF A;  4I49 A;  2BTY A;  3AB2 A;  2BMU A;  2BRI A;  2WE4 A;  3S6H A;  1GS5 A;  3C1N A;  1OHB A;  4JZ7 A;  4JZ8 A;  2OGX B;  4Q1T A;  4F6T A;  3ZZI A;  3K4O A;  3AAW A;  1Z9D A;  3D2M A;  4KZT A;  3K56 A;  2J4L A;  3LKK A;  3QVH A;  3S6K A;  3K52 A;  2J4K A;  3T7B A;  1B7B A;  2AP9 A;  4A7X A;  2R8V A;  1OHA A;  2J0X A;  3LL9 A;  2OGX A;  3K4Y A;  2VA1 A;  3B8G A;  2V5H A;  3AB4 A; 
#chains in the Genus database with same CATH homology
 3WWM A;  3S6G A;  2BRX A;  4NDR A;  2BND A;  2V4Y A;  3LL5 A;  3QUN A;  3L76 A;  3WWN A;  2BNE A;  3ZZF A;  2A1F A;  2J5V A;  2J4J A;  2J5T A;  2J0W A;  2JJX A;  2WE5 A;  4USJ A;  3D40 A;  4JZ9 A;  2W21 A;  2JI5 A;  3QUO A;  2AKO A;  1OH9 A;  3D2P A;  4NDR B;  3EK5 A;  2CDQ A;  3QUR A;  3D41 A;  2E9Y A;  2IJ9 A;  1YBD A;  2X2W A;  2RD5 A;  2R98 A;  3C20 A;  4NDQ A;  4AXS A;  3ZZH A;  2WXB A;  4NDQ B;  3ZZG A;  2BNF A;  2JJ4 A;  2BUF A;  3EK6 A;  3L86 A;  3U6U A;  4AB7 A;  4OLC A;  4NDP A;  1E19 A;  3NWY A;  4F6T B;  3C1M A;  3QVF A;  1GSJ A;  4NDP B;  4NDO B;  3TVI A;  2HMF A;  4NDO A;  4A7W A;  3KZF A;  4I49 A;  2BTY A;  3AB2 A;  2BMU A;  2BRI A;  2WE4 A;  3S6H A;  1GS5 A;  3C1N A;  1OHB A;  4JZ7 A;  4JZ8 A;  2OGX B;  4Q1T A;  4F6T A;  3ZZI A;  3K4O A;  3AAW A;  1Z9D A;  3D2M A;  4KZT A;  3K56 A;  2J4L A;  3LKK A;  3QVH A;  3S6K A;  3K52 A;  2J4K A;  3T7B A;  1B7B A;  2AP9 A;  4A7X A;  2R8V A;  1OHA A;  2J0X A;  3LL9 A;  2OGX A;  3K4Y A;  2VA1 A;  3B8G A;  2V5H A;  3AB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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