4A7XA

Crystal structure of uridylate kinase from helicobacter pylori
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
234
structure length
234
Chain Sequence
NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structures of Helicobacter Pylori Uridylate Kinase: Insight Into Release of the Product Udp
pubmed doi rcsb
source organism Helicobacter pylori
molecule tags Transferase
total genus 77
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2011-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4a7xA00
2A1FA 3D41A 4NDPB 3EK5A 2X2WA 4AXSA 1E19A 4I49A 3S6KA 2IJ9A 3C1MA 3NWYA 2BMUA 1Z9DA 4KZTA 3S6HA 4NDRB 3B8GA 4F6TA 4OLCA 4NDQB 1GS5A 3AB2A 3QVFA 2RD5A 2R8VA 2J0XA 2V4YA 3TVIA 2AP9A 3K56A 3C1NA 2WXBA 2OGXB 2HMFA 4JZ9A 1YBDA 3QUOA 3KZFA 4A7WA 3U6UA 2BRXA 3ZZGA 3AB4A 1OH9A 1GSJA 3K4YA 3L86A 2V5HA 2BNFA 3D40A 2CDQA 4JZ7A 3D2PA 3AAWA 3T7BA 4JZ8A 3C20A 2J4JA 3WWMA 2J0WA 4Q1TA 4NDRA 2BTYA 4A7XA 3LKKA 4NDQA 3LL5A 2AKOA 3QUNA 2J5TA 3WWNA 3ZZFA 3QVHA 3LL9A 2R98A 2W21A 3QURA 4NDOA 3K52A 4NDPA 1B7BA 2VA1A 2JI5A 4F6TB 2J5VA 1OHBA 3ZZIA 2E9YA 3ZZHA 2BNDA 3D2MA 2J4KA 3EK6A 3K4OA 2J4LA 3L76A 3S6GA 2BRIA 2JJ4A 1OHAA 2BUFA 2WE5A 2WE4A 2OGXA 2BNEA 4AB7A 4USJA 4NDOB 2JJXA
chains in the Genus database with same CATH superfamily
2A1FA 3D41A 4NDPB 3EK5A 2X2WA 4AXSA 1E19A 4I49A 3S6KA 2IJ9A 3C1MA 3NWYA 2BMUA 1Z9DA 4KZTA 3S6HA 4NDRB 3B8GA 4F6TA 4OLCA 4NDQB 1GS5A 3AB2A 3QVFA 2RD5A 2R8VA 2J0XA 2V4YA 3TVIA 2AP9A 3K56A 3C1NA 2WXBA 2OGXB 2HMFA 4JZ9A 1YBDA 3QUOA 3KZFA 4A7WA 3U6UA 2BRXA 3ZZGA 3AB4A 1OH9A 1GSJA 3K4YA 3L86A 2V5HA 2BNFA 3D40A 2CDQA 4JZ7A 3D2PA 3AAWA 3T7BA 4JZ8A 3C20A 2J4JA 3WWMA 2J0WA 4Q1TA 4NDRA 2BTYA 4A7XA 3LKKA 4NDQA 3LL5A 2AKOA 3QUNA 2J5TA 3WWNA 3ZZFA 3QVHA 3LL9A 2R98A 2W21A 3QURA 4NDOA 3K52A 4NDPA 1B7BA 2VA1A 2JI5A 4F6TB 2J5VA 1OHBA 3ZZIA 2E9YA 3ZZHA 2BNDA 3D2MA 2J4KA 3EK6A 3K4OA 2J4LA 3L76A 3S6GA 2BRIA 2JJ4A 1OHAA 2BUFA 2WE5A 2WE4A 2OGXA 2BNEA 4AB7A 4USJA 4NDOB 2JJXA
chains in the Genus database with same CATH topology
2A1FA 3D41A 4NDPB 3EK5A 2X2WA 4AXSA 1E19A 4I49A 3S6KA 2IJ9A 3C1MA 3NWYA 2BMUA 1Z9DA 4KZTA 3S6HA 4NDRB 3B8GA 4F6TA 4OLCA 4NDQB 1GS5A 3AB2A 3QVFA 2RD5A 2R8VA 2J0XA 2V4YA 3TVIA 2AP9A 3K56A 3C1NA 2WXBA 2OGXB 2HMFA 4JZ9A 1YBDA 3QUOA 3KZFA 4A7WA 3U6UA 2BRXA 3ZZGA 3AB4A 1OH9A 1GSJA 3K4YA 3L86A 2V5HA 2BNFA 3D40A 2CDQA 4JZ7A 3D2PA 3AAWA 3T7BA 4JZ8A 3C20A 2J4JA 3WWMA 2J0WA 4Q1TA 4NDRA 2BTYA 4A7XA 3LKKA 4NDQA 3LL5A 2AKOA 3QUNA 2J5TA 3WWNA 3ZZFA 3QVHA 3LL9A 2R98A 2W21A 3QURA 4NDOA 3K52A 4NDPA 1B7BA 2VA1A 2JI5A 4F6TB 2J5VA 1OHBA 3ZZIA 2E9YA 3ZZHA 2BNDA 3D2MA 2J4KA 3EK6A 3K4OA 2J4LA 3L76A 3S6GA 2BRIA 2JJ4A 1OHAA 2BUFA 2WE5A 2WE4A 2OGXA 2BNEA 4AB7A 4USJA 4NDOB 2JJXA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2A1F A;  3D41 A;  4NDP B;  3EK5 A;  2X2W A;  4AXS A;  1E19 A;  4I49 A;  3S6K A;  2IJ9 A;  3C1M A;  3NWY A;  2BMU A;  1Z9D A;  4KZT A;  3S6H A;  4NDR B;  3B8G A;  4F6T A;  4OLC A;  4NDQ B;  1GS5 A;  3AB2 A;  3QVF A;  2RD5 A;  2R8V A;  2J0X A;  2V4Y A;  3TVI A;  2AP9 A;  3K56 A;  3C1N A;  2WXB A;  2OGX B;  2HMF A;  4JZ9 A;  1YBD A;  3QUO A;  3KZF A;  4A7W A;  3U6U A;  2BRX A;  3ZZG A;  3AB4 A;  1OH9 A;  1GSJ A;  3K4Y A;  3L86 A;  2V5H A;  2BNF A;  3D40 A;  2CDQ A;  4JZ7 A;  3D2P A;  3AAW A;  3T7B A;  4JZ8 A;  3C20 A;  2J4J A;  3WWM A;  2J0W A;  4Q1T A;  4NDR A;  2BTY A;  4A7X A;  3LKK A;  4NDQ A;  3LL5 A;  2AKO A;  3QUN A;  2J5T A;  3WWN A;  3ZZF A;  3QVH A;  3LL9 A;  2R98 A;  2W21 A;  3QUR A;  4NDO A;  3K52 A;  4NDP A;  1B7B A;  2VA1 A;  2JI5 A;  4F6T B;  2J5V A;  1OHB A;  3ZZI A;  2E9Y A;  3ZZH A;  2BND A;  3D2M A;  2J4K A;  3EK6 A;  3K4O A;  2J4L A;  3L76 A;  3S6G A;  2BRI A;  2JJ4 A;  1OHA A;  2BUF A;  2WE5 A;  2WE4 A;  2OGX A;  2BNE A;  4AB7 A;  4USJ A;  4NDO B;  2JJX A; 
#chains in the Genus database with same CATH topology
 2A1F A;  3D41 A;  4NDP B;  3EK5 A;  2X2W A;  4AXS A;  1E19 A;  4I49 A;  3S6K A;  2IJ9 A;  3C1M A;  3NWY A;  2BMU A;  1Z9D A;  4KZT A;  3S6H A;  4NDR B;  3B8G A;  4F6T A;  4OLC A;  4NDQ B;  1GS5 A;  3AB2 A;  3QVF A;  2RD5 A;  2R8V A;  2J0X A;  2V4Y A;  3TVI A;  2AP9 A;  3K56 A;  3C1N A;  2WXB A;  2OGX B;  2HMF A;  4JZ9 A;  1YBD A;  3QUO A;  3KZF A;  4A7W A;  3U6U A;  2BRX A;  3ZZG A;  3AB4 A;  1OH9 A;  1GSJ A;  3K4Y A;  3L86 A;  2V5H A;  2BNF A;  3D40 A;  2CDQ A;  4JZ7 A;  3D2P A;  3AAW A;  3T7B A;  4JZ8 A;  3C20 A;  2J4J A;  3WWM A;  2J0W A;  4Q1T A;  4NDR A;  2BTY A;  4A7X A;  3LKK A;  4NDQ A;  3LL5 A;  2AKO A;  3QUN A;  2J5T A;  3WWN A;  3ZZF A;  3QVH A;  3LL9 A;  2R98 A;  2W21 A;  3QUR A;  4NDO A;  3K52 A;  4NDP A;  1B7B A;  2VA1 A;  2JI5 A;  4F6T B;  2J5V A;  1OHB A;  3ZZI A;  2E9Y A;  3ZZH A;  2BND A;  3D2M A;  2J4K A;  3EK6 A;  3K4O A;  2J4L A;  3L76 A;  3S6G A;  2BRI A;  2JJ4 A;  1OHA A;  2BUF A;  2WE5 A;  2WE4 A;  2OGX A;  2BNE A;  4AB7 A;  4USJ A;  4NDO B;  2JJX A; 
#chains in the Genus database with same CATH homology
 2A1F A;  3D41 A;  4NDP B;  3EK5 A;  2X2W A;  4AXS A;  1E19 A;  4I49 A;  3S6K A;  2IJ9 A;  3C1M A;  3NWY A;  2BMU A;  1Z9D A;  4KZT A;  3S6H A;  4NDR B;  3B8G A;  4F6T A;  4OLC A;  4NDQ B;  1GS5 A;  3AB2 A;  3QVF A;  2RD5 A;  2R8V A;  2J0X A;  2V4Y A;  3TVI A;  2AP9 A;  3K56 A;  3C1N A;  2WXB A;  2OGX B;  2HMF A;  4JZ9 A;  1YBD A;  3QUO A;  3KZF A;  4A7W A;  3U6U A;  2BRX A;  3ZZG A;  3AB4 A;  1OH9 A;  1GSJ A;  3K4Y A;  3L86 A;  2V5H A;  2BNF A;  3D40 A;  2CDQ A;  4JZ7 A;  3D2P A;  3AAW A;  3T7B A;  4JZ8 A;  3C20 A;  2J4J A;  3WWM A;  2J0W A;  4Q1T A;  4NDR A;  2BTY A;  4A7X A;  3LKK A;  4NDQ A;  3LL5 A;  2AKO A;  3QUN A;  2J5T A;  3WWN A;  3ZZF A;  3QVH A;  3LL9 A;  2R98 A;  2W21 A;  3QUR A;  4NDO A;  3K52 A;  4NDP A;  1B7B A;  2VA1 A;  2JI5 A;  4F6T B;  2J5V A;  1OHB A;  3ZZI A;  2E9Y A;  3ZZH A;  2BND A;  3D2M A;  2J4K A;  3EK6 A;  3K4O A;  2J4L A;  3L76 A;  3S6G A;  2BRI A;  2JJ4 A;  1OHA A;  2BUF A;  2WE5 A;  2WE4 A;  2OGX A;  2BNE A;  4AB7 A;  4USJ A;  4NDO B;  2JJX A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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