4A7XA

Crystal structure of uridylate kinase from helicobacter pylori
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
234
structure length
234
Chain Sequence
NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structures of Helicobacter Pylori Uridylate Kinase: Insight Into Release of the Product Udp
pubmed doi rcsb
source organism Helicobacter pylori
total genus 77
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2011-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4a7xA00
2J4KA 3D40A 2J4LA 2J4JA 2J0WA 4A7XA 4NDQA 3QVFA 4NDRA 2BUFA 2HMFA 3B8GA 2JJXA 3ZZIA 2BNEA 3QVHA 2V5HA 3D41A 3ZZHA 3WWMA 4F6TA 1GS5A 2BNDA 2JJ4A 2W21A 3LL5A 4JZ7A 3K4YA 3S6KA 2BRIA 2WE5A 1E19A 4KZTA 3D2PA 4NDOB 2WE4A 3AAWA 4JZ9A 3NWYA 4NDPA 3T7BA 3K52A 1OHAA 1OH9A 3EK6A 1YBDA 3K4OA 4AXSA 3QURA 3C1MA 1GSJA 4I49A 2JI5A 2R98A 2WXBA 3ZZFA 2J5TA 4NDQB 2J5VA 3C1NA 3C20A 2BMUA 3QUNA 2BNFA 2OGXA 1B7BA 2R8VA 4USJA 3L86A 3U6UA 3TVIA 2E9YA 2AP9A 2IJ9A 3S6GA 4NDOA 2AKOA 3EK5A 4A7WA 3S6HA 2A1FA 3WWNA 3K56A 1OHBA 4NDRB 4NDPB 3LL9A 2CDQA 3AB4A 2BTYA 4AB7A 4F6TB 2BRXA 4JZ8A 3AB2A 3D2MA 4OLCA 3LKKA 3QUOA 2V4YA 2J0XA 2RD5A 2OGXB 3ZZGA 1Z9DA 3KZFA 3L76A 2X2WA 2VA1A 4Q1TA
chains in the Genus database with same CATH superfamily
2J4KA 3D40A 2J4LA 2J4JA 2J0WA 4A7XA 4NDQA 3QVFA 4NDRA 2BUFA 2HMFA 3B8GA 2JJXA 3ZZIA 2BNEA 3QVHA 2V5HA 3D41A 3ZZHA 3WWMA 4F6TA 1GS5A 2BNDA 2JJ4A 2W21A 3LL5A 4JZ7A 3K4YA 3S6KA 2BRIA 2WE5A 1E19A 4KZTA 3D2PA 4NDOB 2WE4A 3AAWA 4JZ9A 3NWYA 4NDPA 3T7BA 3K52A 1OHAA 1OH9A 3EK6A 1YBDA 3K4OA 4AXSA 3QURA 3C1MA 1GSJA 4I49A 2JI5A 2R98A 2WXBA 3ZZFA 2J5TA 4NDQB 2J5VA 3C1NA 3C20A 2BMUA 3QUNA 2BNFA 2OGXA 1B7BA 2R8VA 4USJA 3L86A 3U6UA 3TVIA 2E9YA 2AP9A 2IJ9A 3S6GA 4NDOA 2AKOA 3EK5A 4A7WA 3S6HA 2A1FA 3WWNA 3K56A 1OHBA 4NDRB 4NDPB 3LL9A 2CDQA 3AB4A 2BTYA 4AB7A 4F6TB 2BRXA 4JZ8A 3AB2A 3D2MA 4OLCA 3LKKA 3QUOA 2V4YA 2J0XA 2RD5A 2OGXB 3ZZGA 1Z9DA 3KZFA 3L76A 2X2WA 2VA1A 4Q1TA
chains in the Genus database with same CATH topology
2J4KA 3D40A 2J4LA 2J4JA 2J0WA 4A7XA 4NDQA 3QVFA 4NDRA 2BUFA 2HMFA 3B8GA 2JJXA 3ZZIA 2BNEA 3QVHA 2V5HA 3D41A 3ZZHA 3WWMA 4F6TA 1GS5A 2BNDA 2JJ4A 2W21A 3LL5A 4JZ7A 3K4YA 3S6KA 2BRIA 2WE5A 1E19A 4KZTA 3D2PA 4NDOB 2WE4A 3AAWA 4JZ9A 3NWYA 4NDPA 3T7BA 3K52A 1OHAA 1OH9A 3EK6A 1YBDA 3K4OA 4AXSA 3QURA 3C1MA 1GSJA 4I49A 2JI5A 2R98A 2WXBA 3ZZFA 2J5TA 4NDQB 2J5VA 3C1NA 3C20A 2BMUA 3QUNA 2BNFA 2OGXA 1B7BA 2R8VA 4USJA 3L86A 3U6UA 3TVIA 2E9YA 2AP9A 2IJ9A 3S6GA 4NDOA 2AKOA 3EK5A 4A7WA 3S6HA 2A1FA 3WWNA 3K56A 1OHBA 4NDRB 4NDPB 3LL9A 2CDQA 3AB4A 2BTYA 4AB7A 4F6TB 2BRXA 4JZ8A 3AB2A 3D2MA 4OLCA 3LKKA 3QUOA 2V4YA 2J0XA 2RD5A 2OGXB 3ZZGA 1Z9DA 3KZFA 3L76A 2X2WA 2VA1A 4Q1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J4K A;  3D40 A;  2J4L A;  2J4J A;  2J0W A;  4A7X A;  4NDQ A;  3QVF A;  4NDR A;  2BUF A;  2HMF A;  3B8G A;  2JJX A;  3ZZI A;  2BNE A;  3QVH A;  2V5H A;  3D41 A;  3ZZH A;  3WWM A;  4F6T A;  1GS5 A;  2BND A;  2JJ4 A;  2W21 A;  3LL5 A;  4JZ7 A;  3K4Y A;  3S6K A;  2BRI A;  2WE5 A;  1E19 A;  4KZT A;  3D2P A;  4NDO B;  2WE4 A;  3AAW A;  4JZ9 A;  3NWY A;  4NDP A;  3T7B A;  3K52 A;  1OHA A;  1OH9 A;  3EK6 A;  1YBD A;  3K4O A;  4AXS A;  3QUR A;  3C1M A;  1GSJ A;  4I49 A;  2JI5 A;  2R98 A;  2WXB A;  3ZZF A;  2J5T A;  4NDQ B;  2J5V A;  3C1N A;  3C20 A;  2BMU A;  3QUN A;  2BNF A;  2OGX A;  1B7B A;  2R8V A;  4USJ A;  3L86 A;  3U6U A;  3TVI A;  2E9Y A;  2AP9 A;  2IJ9 A;  3S6G A;  4NDO A;  2AKO A;  3EK5 A;  4A7W A;  3S6H A;  2A1F A;  3WWN A;  3K56 A;  1OHB A;  4NDR B;  4NDP B;  3LL9 A;  2CDQ A;  3AB4 A;  2BTY A;  4AB7 A;  4F6T B;  2BRX A;  4JZ8 A;  3AB2 A;  3D2M A;  4OLC A;  3LKK A;  3QUO A;  2V4Y A;  2J0X A;  2RD5 A;  2OGX B;  3ZZG A;  1Z9D A;  3KZF A;  3L76 A;  2X2W A;  2VA1 A;  4Q1T A; 
#chains in the Genus database with same CATH topology
 2J4K A;  3D40 A;  2J4L A;  2J4J A;  2J0W A;  4A7X A;  4NDQ A;  3QVF A;  4NDR A;  2BUF A;  2HMF A;  3B8G A;  2JJX A;  3ZZI A;  2BNE A;  3QVH A;  2V5H A;  3D41 A;  3ZZH A;  3WWM A;  4F6T A;  1GS5 A;  2BND A;  2JJ4 A;  2W21 A;  3LL5 A;  4JZ7 A;  3K4Y A;  3S6K A;  2BRI A;  2WE5 A;  1E19 A;  4KZT A;  3D2P A;  4NDO B;  2WE4 A;  3AAW A;  4JZ9 A;  3NWY A;  4NDP A;  3T7B A;  3K52 A;  1OHA A;  1OH9 A;  3EK6 A;  1YBD A;  3K4O A;  4AXS A;  3QUR A;  3C1M A;  1GSJ A;  4I49 A;  2JI5 A;  2R98 A;  2WXB A;  3ZZF A;  2J5T A;  4NDQ B;  2J5V A;  3C1N A;  3C20 A;  2BMU A;  3QUN A;  2BNF A;  2OGX A;  1B7B A;  2R8V A;  4USJ A;  3L86 A;  3U6U A;  3TVI A;  2E9Y A;  2AP9 A;  2IJ9 A;  3S6G A;  4NDO A;  2AKO A;  3EK5 A;  4A7W A;  3S6H A;  2A1F A;  3WWN A;  3K56 A;  1OHB A;  4NDR B;  4NDP B;  3LL9 A;  2CDQ A;  3AB4 A;  2BTY A;  4AB7 A;  4F6T B;  2BRX A;  4JZ8 A;  3AB2 A;  3D2M A;  4OLC A;  3LKK A;  3QUO A;  2V4Y A;  2J0X A;  2RD5 A;  2OGX B;  3ZZG A;  1Z9D A;  3KZF A;  3L76 A;  2X2W A;  2VA1 A;  4Q1T A; 
#chains in the Genus database with same CATH homology
 2J4K A;  3D40 A;  2J4L A;  2J4J A;  2J0W A;  4A7X A;  4NDQ A;  3QVF A;  4NDR A;  2BUF A;  2HMF A;  3B8G A;  2JJX A;  3ZZI A;  2BNE A;  3QVH A;  2V5H A;  3D41 A;  3ZZH A;  3WWM A;  4F6T A;  1GS5 A;  2BND A;  2JJ4 A;  2W21 A;  3LL5 A;  4JZ7 A;  3K4Y A;  3S6K A;  2BRI A;  2WE5 A;  1E19 A;  4KZT A;  3D2P A;  4NDO B;  2WE4 A;  3AAW A;  4JZ9 A;  3NWY A;  4NDP A;  3T7B A;  3K52 A;  1OHA A;  1OH9 A;  3EK6 A;  1YBD A;  3K4O A;  4AXS A;  3QUR A;  3C1M A;  1GSJ A;  4I49 A;  2JI5 A;  2R98 A;  2WXB A;  3ZZF A;  2J5T A;  4NDQ B;  2J5V A;  3C1N A;  3C20 A;  2BMU A;  3QUN A;  2BNF A;  2OGX A;  1B7B A;  2R8V A;  4USJ A;  3L86 A;  3U6U A;  3TVI A;  2E9Y A;  2AP9 A;  2IJ9 A;  3S6G A;  4NDO A;  2AKO A;  3EK5 A;  4A7W A;  3S6H A;  2A1F A;  3WWN A;  3K56 A;  1OHB A;  4NDR B;  4NDP B;  3LL9 A;  2CDQ A;  3AB4 A;  2BTY A;  4AB7 A;  4F6T B;  2BRX A;  4JZ8 A;  3AB2 A;  3D2M A;  4OLC A;  3LKK A;  3QUO A;  2V4Y A;  2J0X A;  2RD5 A;  2OGX B;  3ZZG A;  1Z9D A;  3KZF A;  3L76 A;  2X2W A;  2VA1 A;  4Q1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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