2W21A

Crystal structure of the aminoacid kinase domain of the glutamate 5 kinase of escherichia coli.
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
256
structure length
246
Chain Sequence
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of Glutamate 5 Kinase of Escherichia Coli without Substrates
rcsb
source organism Escherichia coli
molecule tags Transferase
molecule keywords GLUTAMATE 5-KINASE
total genus 83
structure length 246
sequence length 256
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2008-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2w21A00
2OGXA 2AP9A 2BRIA 2WE5A 3QUOA 3S6HA 3EK6A 3QUNA 3ZZFA 3D2PA 3K52A 2HMFA 2OGXB 4JZ9A 3S6GA 3QVHA 3L76A 1GSJA 4AXSA 4NDQA 1OHAA 3LL9A 4F6TA 2BTYA 2WXBA 3LKKA 3TVIA 2JJXA 4JZ7A 2V4YA 1Z9DA 2J5TA 4F6TB 3B8GA 2AKOA 3ZZIA 3C20A 1B7BA 2BNDA 2J4JA 3QVFA 2R8VA 1GS5A 1YBDA 3D40A 1OHBA 3KZFA 1E19A 4I49A 4A7XA 2J0WA 3ZZGA 2BUFA 2RD5A 3K56A 4NDQB 4NDPA 4NDPB 2BNEA 3D2MA 2A1FA 2BNFA 2E9YA 3L86A 3NWYA 2JJ4A 3U6UA 2J0XA 4NDOB 2J4KA 2R98A 3K4OA 3EK5A 2JI5A 2WE4A 2J4LA 2X2WA 2BRXA 3K4YA 3S6KA 3AAWA 4JZ8A 3WWMA 3D41A 4NDRB 2VA1A 3C1NA 2BMUA 1OH9A 2IJ9A 4USJA 3LL5A 3ZZHA 3WWNA 2J5VA 4Q1TA 4OLCA 4A7WA 2V5HA 2W21A 3T7BA 4NDOA 3C1MA 4NDRA 4AB7A 4KZTA 3AB2A 3QURA 3AB4A 2CDQA
chains in the Genus database with same CATH superfamily
2OGXA 2AP9A 2BRIA 2WE5A 3QUOA 3S6HA 3EK6A 3QUNA 3ZZFA 3D2PA 3K52A 2HMFA 2OGXB 4JZ9A 3S6GA 3QVHA 3L76A 1GSJA 4AXSA 4NDQA 1OHAA 3LL9A 4F6TA 2BTYA 2WXBA 3LKKA 3TVIA 2JJXA 4JZ7A 2V4YA 1Z9DA 2J5TA 4F6TB 3B8GA 2AKOA 3ZZIA 3C20A 1B7BA 2BNDA 2J4JA 3QVFA 2R8VA 1GS5A 1YBDA 3D40A 1OHBA 3KZFA 1E19A 4I49A 4A7XA 2J0WA 3ZZGA 2BUFA 2RD5A 3K56A 4NDQB 4NDPA 4NDPB 2BNEA 3D2MA 2A1FA 2BNFA 2E9YA 3L86A 3NWYA 2JJ4A 3U6UA 2J0XA 4NDOB 2J4KA 2R98A 3K4OA 3EK5A 2JI5A 2WE4A 2J4LA 2X2WA 2BRXA 3K4YA 3S6KA 3AAWA 4JZ8A 3WWMA 3D41A 4NDRB 2VA1A 3C1NA 2BMUA 1OH9A 2IJ9A 4USJA 3LL5A 3ZZHA 3WWNA 2J5VA 4Q1TA 4OLCA 4A7WA 2V5HA 2W21A 3T7BA 4NDOA 3C1MA 4NDRA 4AB7A 4KZTA 3AB2A 3QURA 3AB4A 2CDQA
chains in the Genus database with same CATH topology
2OGXA 2AP9A 2BRIA 2WE5A 3QUOA 3S6HA 3EK6A 3QUNA 3ZZFA 3D2PA 3K52A 2HMFA 2OGXB 4JZ9A 3S6GA 3QVHA 3L76A 1GSJA 4AXSA 4NDQA 1OHAA 3LL9A 4F6TA 2BTYA 2WXBA 3LKKA 3TVIA 2JJXA 4JZ7A 2V4YA 1Z9DA 2J5TA 4F6TB 3B8GA 2AKOA 3ZZIA 3C20A 1B7BA 2BNDA 2J4JA 3QVFA 2R8VA 1GS5A 1YBDA 3D40A 1OHBA 3KZFA 1E19A 4I49A 4A7XA 2J0WA 3ZZGA 2BUFA 2RD5A 3K56A 4NDQB 4NDPA 4NDPB 2BNEA 3D2MA 2A1FA 2BNFA 2E9YA 3L86A 3NWYA 2JJ4A 3U6UA 2J0XA 4NDOB 2J4KA 2R98A 3K4OA 3EK5A 2JI5A 2WE4A 2J4LA 2X2WA 2BRXA 3K4YA 3S6KA 3AAWA 4JZ8A 3WWMA 3D41A 4NDRB 2VA1A 3C1NA 2BMUA 1OH9A 2IJ9A 4USJA 3LL5A 3ZZHA 3WWNA 2J5VA 4Q1TA 4OLCA 4A7WA 2V5HA 2W21A 3T7BA 4NDOA 3C1MA 4NDRA 4AB7A 4KZTA 3AB2A 3QURA 3AB4A 2CDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OGX A;  2AP9 A;  2BRI A;  2WE5 A;  3QUO A;  3S6H A;  3EK6 A;  3QUN A;  3ZZF A;  3D2P A;  3K52 A;  2HMF A;  2OGX B;  4JZ9 A;  3S6G A;  3QVH A;  3L76 A;  1GSJ A;  4AXS A;  4NDQ A;  1OHA A;  3LL9 A;  4F6T A;  2BTY A;  2WXB A;  3LKK A;  3TVI A;  2JJX A;  4JZ7 A;  2V4Y A;  1Z9D A;  2J5T A;  4F6T B;  3B8G A;  2AKO A;  3ZZI A;  3C20 A;  1B7B A;  2BND A;  2J4J A;  3QVF A;  2R8V A;  1GS5 A;  1YBD A;  3D40 A;  1OHB A;  3KZF A;  1E19 A;  4I49 A;  4A7X A;  2J0W A;  3ZZG A;  2BUF A;  2RD5 A;  3K56 A;  4NDQ B;  4NDP A;  4NDP B;  2BNE A;  3D2M A;  2A1F A;  2BNF A;  2E9Y A;  3L86 A;  3NWY A;  2JJ4 A;  3U6U A;  2J0X A;  4NDO B;  2J4K A;  2R98 A;  3K4O A;  3EK5 A;  2JI5 A;  2WE4 A;  2J4L A;  2X2W A;  2BRX A;  3K4Y A;  3S6K A;  3AAW A;  4JZ8 A;  3WWM A;  3D41 A;  4NDR B;  2VA1 A;  3C1N A;  2BMU A;  1OH9 A;  2IJ9 A;  4USJ A;  3LL5 A;  3ZZH A;  3WWN A;  2J5V A;  4Q1T A;  4OLC A;  4A7W A;  2V5H A;  2W21 A;  3T7B A;  4NDO A;  3C1M A;  4NDR A;  4AB7 A;  4KZT A;  3AB2 A;  3QUR A;  3AB4 A;  2CDQ A; 
#chains in the Genus database with same CATH topology
 2OGX A;  2AP9 A;  2BRI A;  2WE5 A;  3QUO A;  3S6H A;  3EK6 A;  3QUN A;  3ZZF A;  3D2P A;  3K52 A;  2HMF A;  2OGX B;  4JZ9 A;  3S6G A;  3QVH A;  3L76 A;  1GSJ A;  4AXS A;  4NDQ A;  1OHA A;  3LL9 A;  4F6T A;  2BTY A;  2WXB A;  3LKK A;  3TVI A;  2JJX A;  4JZ7 A;  2V4Y A;  1Z9D A;  2J5T A;  4F6T B;  3B8G A;  2AKO A;  3ZZI A;  3C20 A;  1B7B A;  2BND A;  2J4J A;  3QVF A;  2R8V A;  1GS5 A;  1YBD A;  3D40 A;  1OHB A;  3KZF A;  1E19 A;  4I49 A;  4A7X A;  2J0W A;  3ZZG A;  2BUF A;  2RD5 A;  3K56 A;  4NDQ B;  4NDP A;  4NDP B;  2BNE A;  3D2M A;  2A1F A;  2BNF A;  2E9Y A;  3L86 A;  3NWY A;  2JJ4 A;  3U6U A;  2J0X A;  4NDO B;  2J4K A;  2R98 A;  3K4O A;  3EK5 A;  2JI5 A;  2WE4 A;  2J4L A;  2X2W A;  2BRX A;  3K4Y A;  3S6K A;  3AAW A;  4JZ8 A;  3WWM A;  3D41 A;  4NDR B;  2VA1 A;  3C1N A;  2BMU A;  1OH9 A;  2IJ9 A;  4USJ A;  3LL5 A;  3ZZH A;  3WWN A;  2J5V A;  4Q1T A;  4OLC A;  4A7W A;  2V5H A;  2W21 A;  3T7B A;  4NDO A;  3C1M A;  4NDR A;  4AB7 A;  4KZT A;  3AB2 A;  3QUR A;  3AB4 A;  2CDQ A; 
#chains in the Genus database with same CATH homology
 2OGX A;  2AP9 A;  2BRI A;  2WE5 A;  3QUO A;  3S6H A;  3EK6 A;  3QUN A;  3ZZF A;  3D2P A;  3K52 A;  2HMF A;  2OGX B;  4JZ9 A;  3S6G A;  3QVH A;  3L76 A;  1GSJ A;  4AXS A;  4NDQ A;  1OHA A;  3LL9 A;  4F6T A;  2BTY A;  2WXB A;  3LKK A;  3TVI A;  2JJX A;  4JZ7 A;  2V4Y A;  1Z9D A;  2J5T A;  4F6T B;  3B8G A;  2AKO A;  3ZZI A;  3C20 A;  1B7B A;  2BND A;  2J4J A;  3QVF A;  2R8V A;  1GS5 A;  1YBD A;  3D40 A;  1OHB A;  3KZF A;  1E19 A;  4I49 A;  4A7X A;  2J0W A;  3ZZG A;  2BUF A;  2RD5 A;  3K56 A;  4NDQ B;  4NDP A;  4NDP B;  2BNE A;  3D2M A;  2A1F A;  2BNF A;  2E9Y A;  3L86 A;  3NWY A;  2JJ4 A;  3U6U A;  2J0X A;  4NDO B;  2J4K A;  2R98 A;  3K4O A;  3EK5 A;  2JI5 A;  2WE4 A;  2J4L A;  2X2W A;  2BRX A;  3K4Y A;  3S6K A;  3AAW A;  4JZ8 A;  3WWM A;  3D41 A;  4NDR B;  2VA1 A;  3C1N A;  2BMU A;  1OH9 A;  2IJ9 A;  4USJ A;  3LL5 A;  3ZZH A;  3WWN A;  2J5V A;  4Q1T A;  4OLC A;  4A7W A;  2V5H A;  2W21 A;  3T7B A;  4NDO A;  3C1M A;  4NDR A;  4AB7 A;  4KZT A;  3AB2 A;  3QUR A;  3AB4 A;  2CDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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