3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
molecule tags Transferase
molecule keywords Gamma-glutamyl kinase related protein
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
4A7WA 2R98A 3LKKA 4NDOA 1OH9A 3S6GA 3ZZFA 2BMUA 2J4JA 4JZ8A 2W21A 3EK5A 4AXSA 3D40A 2IJ9A 2VA1A 4F6TB 2WE4A 3D2MA 4OLCA 2JJXA 3NWYA 4NDOB 4A7XA 2J4LA 2BRXA 3K4OA 2V5HA 4USJA 2OGXB 2BTYA 3AB2A 2OGXA 2R8VA 2CDQA 4NDPB 3L86A 3B8GA 1OHBA 3S6HA 2E9YA 3KZFA 3T7BA 3K52A 3ZZIA 2AP9A 3ZZHA 4F6TA 1OHAA 4AB7A 1E19A 3QUOA 3LL9A 4NDQB 2V4YA 2BNFA 4NDPA 3AAWA 4NDQA 4JZ9A 4NDRA 3K4YA 3C1NA 3C20A 1GSJA 1GS5A 3K56A 3S6KA 2WE5A 2BNEA 4JZ7A 2BNDA 4NDRB 1B7BA 3L76A 3C1MA 3QUNA 3D41A 3QURA 3D2PA 2J5VA 1Z9DA 3EK6A 3TVIA 3WWMA 2AKOA 2J5TA 3QVFA 2HMFA 2X2WA 3LL5A 3U6UA 4Q1TA 2WXBA 3WWNA 3ZZGA 4I49A 2A1FA 2BRIA 2RD5A 1YBDA 2J0WA 3QVHA 2J0XA 2J4KA 3AB4A 2JI5A 2BUFA 4KZTA 2JJ4A
chains in the Genus database with same CATH superfamily
4A7WA 2R98A 3LKKA 4NDOA 1OH9A 3S6GA 3ZZFA 2BMUA 2J4JA 4JZ8A 2W21A 3EK5A 4AXSA 3D40A 2IJ9A 2VA1A 4F6TB 2WE4A 3D2MA 4OLCA 2JJXA 3NWYA 4NDOB 4A7XA 2J4LA 2BRXA 3K4OA 2V5HA 4USJA 2OGXB 2BTYA 3AB2A 2OGXA 2R8VA 2CDQA 4NDPB 3L86A 3B8GA 1OHBA 3S6HA 2E9YA 3KZFA 3T7BA 3K52A 3ZZIA 2AP9A 3ZZHA 4F6TA 1OHAA 4AB7A 1E19A 3QUOA 3LL9A 4NDQB 2V4YA 2BNFA 4NDPA 3AAWA 4NDQA 4JZ9A 4NDRA 3K4YA 3C1NA 3C20A 1GSJA 1GS5A 3K56A 3S6KA 2WE5A 2BNEA 4JZ7A 2BNDA 4NDRB 1B7BA 3L76A 3C1MA 3QUNA 3D41A 3QURA 3D2PA 2J5VA 1Z9DA 3EK6A 3TVIA 3WWMA 2AKOA 2J5TA 3QVFA 2HMFA 2X2WA 3LL5A 3U6UA 4Q1TA 2WXBA 3WWNA 3ZZGA 4I49A 2A1FA 2BRIA 2RD5A 1YBDA 2J0WA 3QVHA 2J0XA 2J4KA 3AB4A 2JI5A 2BUFA 4KZTA 2JJ4A
chains in the Genus database with same CATH topology
4A7WA 2R98A 3LKKA 4NDOA 1OH9A 3S6GA 3ZZFA 2BMUA 2J4JA 4JZ8A 2W21A 3EK5A 4AXSA 3D40A 2IJ9A 2VA1A 4F6TB 2WE4A 3D2MA 4OLCA 2JJXA 3NWYA 4NDOB 4A7XA 2J4LA 2BRXA 3K4OA 2V5HA 4USJA 2OGXB 2BTYA 3AB2A 2OGXA 2R8VA 2CDQA 4NDPB 3L86A 3B8GA 1OHBA 3S6HA 2E9YA 3KZFA 3T7BA 3K52A 3ZZIA 2AP9A 3ZZHA 4F6TA 1OHAA 4AB7A 1E19A 3QUOA 3LL9A 4NDQB 2V4YA 2BNFA 4NDPA 3AAWA 4NDQA 4JZ9A 4NDRA 3K4YA 3C1NA 3C20A 1GSJA 1GS5A 3K56A 3S6KA 2WE5A 2BNEA 4JZ7A 2BNDA 4NDRB 1B7BA 3L76A 3C1MA 3QUNA 3D41A 3QURA 3D2PA 2J5VA 1Z9DA 3EK6A 3TVIA 3WWMA 2AKOA 2J5TA 3QVFA 2HMFA 2X2WA 3LL5A 3U6UA 4Q1TA 2WXBA 3WWNA 3ZZGA 4I49A 2A1FA 2BRIA 2RD5A 1YBDA 2J0WA 3QVHA 2J0XA 2J4KA 3AB4A 2JI5A 2BUFA 4KZTA 2JJ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A7W A;  2R98 A;  3LKK A;  4NDO A;  1OH9 A;  3S6G A;  3ZZF A;  2BMU A;  2J4J A;  4JZ8 A;  2W21 A;  3EK5 A;  4AXS A;  3D40 A;  2IJ9 A;  2VA1 A;  4F6T B;  2WE4 A;  3D2M A;  4OLC A;  2JJX A;  3NWY A;  4NDO B;  4A7X A;  2J4L A;  2BRX A;  3K4O A;  2V5H A;  4USJ A;  2OGX B;  2BTY A;  3AB2 A;  2OGX A;  2R8V A;  2CDQ A;  4NDP B;  3L86 A;  3B8G A;  1OHB A;  3S6H A;  2E9Y A;  3KZF A;  3T7B A;  3K52 A;  3ZZI A;  2AP9 A;  3ZZH A;  4F6T A;  1OHA A;  4AB7 A;  1E19 A;  3QUO A;  3LL9 A;  4NDQ B;  2V4Y A;  2BNF A;  4NDP A;  3AAW A;  4NDQ A;  4JZ9 A;  4NDR A;  3K4Y A;  3C1N A;  3C20 A;  1GSJ A;  1GS5 A;  3K56 A;  3S6K A;  2WE5 A;  2BNE A;  4JZ7 A;  2BND A;  4NDR B;  1B7B A;  3L76 A;  3C1M A;  3QUN A;  3D41 A;  3QUR A;  3D2P A;  2J5V A;  1Z9D A;  3EK6 A;  3TVI A;  3WWM A;  2AKO A;  2J5T A;  3QVF A;  2HMF A;  2X2W A;  3LL5 A;  3U6U A;  4Q1T A;  2WXB A;  3WWN A;  3ZZG A;  4I49 A;  2A1F A;  2BRI A;  2RD5 A;  1YBD A;  2J0W A;  3QVH A;  2J0X A;  2J4K A;  3AB4 A;  2JI5 A;  2BUF A;  4KZT A;  2JJ4 A; 
#chains in the Genus database with same CATH topology
 4A7W A;  2R98 A;  3LKK A;  4NDO A;  1OH9 A;  3S6G A;  3ZZF A;  2BMU A;  2J4J A;  4JZ8 A;  2W21 A;  3EK5 A;  4AXS A;  3D40 A;  2IJ9 A;  2VA1 A;  4F6T B;  2WE4 A;  3D2M A;  4OLC A;  2JJX A;  3NWY A;  4NDO B;  4A7X A;  2J4L A;  2BRX A;  3K4O A;  2V5H A;  4USJ A;  2OGX B;  2BTY A;  3AB2 A;  2OGX A;  2R8V A;  2CDQ A;  4NDP B;  3L86 A;  3B8G A;  1OHB A;  3S6H A;  2E9Y A;  3KZF A;  3T7B A;  3K52 A;  3ZZI A;  2AP9 A;  3ZZH A;  4F6T A;  1OHA A;  4AB7 A;  1E19 A;  3QUO A;  3LL9 A;  4NDQ B;  2V4Y A;  2BNF A;  4NDP A;  3AAW A;  4NDQ A;  4JZ9 A;  4NDR A;  3K4Y A;  3C1N A;  3C20 A;  1GSJ A;  1GS5 A;  3K56 A;  3S6K A;  2WE5 A;  2BNE A;  4JZ7 A;  2BND A;  4NDR B;  1B7B A;  3L76 A;  3C1M A;  3QUN A;  3D41 A;  3QUR A;  3D2P A;  2J5V A;  1Z9D A;  3EK6 A;  3TVI A;  3WWM A;  2AKO A;  2J5T A;  3QVF A;  2HMF A;  2X2W A;  3LL5 A;  3U6U A;  4Q1T A;  2WXB A;  3WWN A;  3ZZG A;  4I49 A;  2A1F A;  2BRI A;  2RD5 A;  1YBD A;  2J0W A;  3QVH A;  2J0X A;  2J4K A;  3AB4 A;  2JI5 A;  2BUF A;  4KZT A;  2JJ4 A; 
#chains in the Genus database with same CATH homology
 4A7W A;  2R98 A;  3LKK A;  4NDO A;  1OH9 A;  3S6G A;  3ZZF A;  2BMU A;  2J4J A;  4JZ8 A;  2W21 A;  3EK5 A;  4AXS A;  3D40 A;  2IJ9 A;  2VA1 A;  4F6T B;  2WE4 A;  3D2M A;  4OLC A;  2JJX A;  3NWY A;  4NDO B;  4A7X A;  2J4L A;  2BRX A;  3K4O A;  2V5H A;  4USJ A;  2OGX B;  2BTY A;  3AB2 A;  2OGX A;  2R8V A;  2CDQ A;  4NDP B;  3L86 A;  3B8G A;  1OHB A;  3S6H A;  2E9Y A;  3KZF A;  3T7B A;  3K52 A;  3ZZI A;  2AP9 A;  3ZZH A;  4F6T A;  1OHA A;  4AB7 A;  1E19 A;  3QUO A;  3LL9 A;  4NDQ B;  2V4Y A;  2BNF A;  4NDP A;  3AAW A;  4NDQ A;  4JZ9 A;  4NDR A;  3K4Y A;  3C1N A;  3C20 A;  1GSJ A;  1GS5 A;  3K56 A;  3S6K A;  2WE5 A;  2BNE A;  4JZ7 A;  2BND A;  4NDR B;  1B7B A;  3L76 A;  3C1M A;  3QUN A;  3D41 A;  3QUR A;  3D2P A;  2J5V A;  1Z9D A;  3EK6 A;  3TVI A;  3WWM A;  2AKO A;  2J5T A;  3QVF A;  2HMF A;  2X2W A;  3LL5 A;  3U6U A;  4Q1T A;  2WXB A;  3WWN A;  3ZZG A;  4I49 A;  2A1F A;  2BRI A;  2RD5 A;  1YBD A;  2J0W A;  3QVH A;  2J0X A;  2J4K A;  3AB4 A;  2JI5 A;  2BUF A;  4KZT A;  2JJ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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