3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Gamma-glutamyl kinase related protein
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
molecule tags Transferase
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
3QUNA 4USJA 4Q1TA 2BMUA 3LL5A 2X2WA 2J5VA 3L86A 3AAWA 2OGXB 2BRIA 2V4YA 3K4YA 2WE4A 1E19A 1B7BA 2R8VA 4OLCA 2BNDA 3AB4A 1YBDA 3C1NA 4AXSA 3K56A 4AB7A 2R98A 3C20A 3D2PA 1OH9A 4KZTA 3D41A 3KZFA 4JZ8A 3B8GA 3K4OA 4F6TA 3U6UA 2J5TA 2J4JA 4A7WA 4NDPA 2JJXA 3ZZGA 2BTYA 3C1MA 4NDOA 3WWMA 3ZZFA 2IJ9A 1OHBA 2VA1A 2AP9A 3D40A 2BUFA 3LL9A 2RD5A 2BNEA 2HMFA 3S6GA 4NDQA 3L76A 3QURA 4JZ7A 3QVFA 4NDRA 3LKKA 3EK6A 4F6TB 4JZ9A 2BNFA 2J0XA 2J0WA 2W21A 3S6KA 2WXBA 4I49A 3ZZHA 3T7BA 3NWYA 2AKOA 3K52A 2OGXA 2JI5A 3AB2A 1OHAA 2V5HA 2BRXA 2JJ4A 4NDQB 3QUOA 3QVHA 2CDQA 4NDRB 2J4LA 3EK5A 1Z9DA 3ZZIA 4NDPB 1GS5A 3D2MA 3WWNA 4NDOB 2A1FA 2E9YA 2J4KA 4A7XA 3S6HA 2WE5A 1GSJA 3TVIA
chains in the Genus database with same CATH superfamily
3QUNA 4USJA 4Q1TA 2BMUA 3LL5A 2X2WA 2J5VA 3L86A 3AAWA 2OGXB 2BRIA 2V4YA 3K4YA 2WE4A 1E19A 1B7BA 2R8VA 4OLCA 2BNDA 3AB4A 1YBDA 3C1NA 4AXSA 3K56A 4AB7A 2R98A 3C20A 3D2PA 1OH9A 4KZTA 3D41A 3KZFA 4JZ8A 3B8GA 3K4OA 4F6TA 3U6UA 2J5TA 2J4JA 4A7WA 4NDPA 2JJXA 3ZZGA 2BTYA 3C1MA 4NDOA 3WWMA 3ZZFA 2IJ9A 1OHBA 2VA1A 2AP9A 3D40A 2BUFA 3LL9A 2RD5A 2BNEA 2HMFA 3S6GA 4NDQA 3L76A 3QURA 4JZ7A 3QVFA 4NDRA 3LKKA 3EK6A 4F6TB 4JZ9A 2BNFA 2J0XA 2J0WA 2W21A 3S6KA 2WXBA 4I49A 3ZZHA 3T7BA 3NWYA 2AKOA 3K52A 2OGXA 2JI5A 3AB2A 1OHAA 2V5HA 2BRXA 2JJ4A 4NDQB 3QUOA 3QVHA 2CDQA 4NDRB 2J4LA 3EK5A 1Z9DA 3ZZIA 4NDPB 1GS5A 3D2MA 3WWNA 4NDOB 2A1FA 2E9YA 2J4KA 4A7XA 3S6HA 2WE5A 1GSJA 3TVIA
chains in the Genus database with same CATH topology
3QUNA 4USJA 4Q1TA 2BMUA 3LL5A 2X2WA 2J5VA 3L86A 3AAWA 2OGXB 2BRIA 2V4YA 3K4YA 2WE4A 1E19A 1B7BA 2R8VA 4OLCA 2BNDA 3AB4A 1YBDA 3C1NA 4AXSA 3K56A 4AB7A 2R98A 3C20A 3D2PA 1OH9A 4KZTA 3D41A 3KZFA 4JZ8A 3B8GA 3K4OA 4F6TA 3U6UA 2J5TA 2J4JA 4A7WA 4NDPA 2JJXA 3ZZGA 2BTYA 3C1MA 4NDOA 3WWMA 3ZZFA 2IJ9A 1OHBA 2VA1A 2AP9A 3D40A 2BUFA 3LL9A 2RD5A 2BNEA 2HMFA 3S6GA 4NDQA 3L76A 3QURA 4JZ7A 3QVFA 4NDRA 3LKKA 3EK6A 4F6TB 4JZ9A 2BNFA 2J0XA 2J0WA 2W21A 3S6KA 2WXBA 4I49A 3ZZHA 3T7BA 3NWYA 2AKOA 3K52A 2OGXA 2JI5A 3AB2A 1OHAA 2V5HA 2BRXA 2JJ4A 4NDQB 3QUOA 3QVHA 2CDQA 4NDRB 2J4LA 3EK5A 1Z9DA 3ZZIA 4NDPB 1GS5A 3D2MA 3WWNA 4NDOB 2A1FA 2E9YA 2J4KA 4A7XA 3S6HA 2WE5A 1GSJA 3TVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QUN A;  4USJ A;  4Q1T A;  2BMU A;  3LL5 A;  2X2W A;  2J5V A;  3L86 A;  3AAW A;  2OGX B;  2BRI A;  2V4Y A;  3K4Y A;  2WE4 A;  1E19 A;  1B7B A;  2R8V A;  4OLC A;  2BND A;  3AB4 A;  1YBD A;  3C1N A;  4AXS A;  3K56 A;  4AB7 A;  2R98 A;  3C20 A;  3D2P A;  1OH9 A;  4KZT A;  3D41 A;  3KZF A;  4JZ8 A;  3B8G A;  3K4O A;  4F6T A;  3U6U A;  2J5T A;  2J4J A;  4A7W A;  4NDP A;  2JJX A;  3ZZG A;  2BTY A;  3C1M A;  4NDO A;  3WWM A;  3ZZF A;  2IJ9 A;  1OHB A;  2VA1 A;  2AP9 A;  3D40 A;  2BUF A;  3LL9 A;  2RD5 A;  2BNE A;  2HMF A;  3S6G A;  4NDQ A;  3L76 A;  3QUR A;  4JZ7 A;  3QVF A;  4NDR A;  3LKK A;  3EK6 A;  4F6T B;  4JZ9 A;  2BNF A;  2J0X A;  2J0W A;  2W21 A;  3S6K A;  2WXB A;  4I49 A;  3ZZH A;  3T7B A;  3NWY A;  2AKO A;  3K52 A;  2OGX A;  2JI5 A;  3AB2 A;  1OHA A;  2V5H A;  2BRX A;  2JJ4 A;  4NDQ B;  3QUO A;  3QVH A;  2CDQ A;  4NDR B;  2J4L A;  3EK5 A;  1Z9D A;  3ZZI A;  4NDP B;  1GS5 A;  3D2M A;  3WWN A;  4NDO B;  2A1F A;  2E9Y A;  2J4K A;  4A7X A;  3S6H A;  2WE5 A;  1GSJ A;  3TVI A; 
#chains in the Genus database with same CATH topology
 3QUN A;  4USJ A;  4Q1T A;  2BMU A;  3LL5 A;  2X2W A;  2J5V A;  3L86 A;  3AAW A;  2OGX B;  2BRI A;  2V4Y A;  3K4Y A;  2WE4 A;  1E19 A;  1B7B A;  2R8V A;  4OLC A;  2BND A;  3AB4 A;  1YBD A;  3C1N A;  4AXS A;  3K56 A;  4AB7 A;  2R98 A;  3C20 A;  3D2P A;  1OH9 A;  4KZT A;  3D41 A;  3KZF A;  4JZ8 A;  3B8G A;  3K4O A;  4F6T A;  3U6U A;  2J5T A;  2J4J A;  4A7W A;  4NDP A;  2JJX A;  3ZZG A;  2BTY A;  3C1M A;  4NDO A;  3WWM A;  3ZZF A;  2IJ9 A;  1OHB A;  2VA1 A;  2AP9 A;  3D40 A;  2BUF A;  3LL9 A;  2RD5 A;  2BNE A;  2HMF A;  3S6G A;  4NDQ A;  3L76 A;  3QUR A;  4JZ7 A;  3QVF A;  4NDR A;  3LKK A;  3EK6 A;  4F6T B;  4JZ9 A;  2BNF A;  2J0X A;  2J0W A;  2W21 A;  3S6K A;  2WXB A;  4I49 A;  3ZZH A;  3T7B A;  3NWY A;  2AKO A;  3K52 A;  2OGX A;  2JI5 A;  3AB2 A;  1OHA A;  2V5H A;  2BRX A;  2JJ4 A;  4NDQ B;  3QUO A;  3QVH A;  2CDQ A;  4NDR B;  2J4L A;  3EK5 A;  1Z9D A;  3ZZI A;  4NDP B;  1GS5 A;  3D2M A;  3WWN A;  4NDO B;  2A1F A;  2E9Y A;  2J4K A;  4A7X A;  3S6H A;  2WE5 A;  1GSJ A;  3TVI A; 
#chains in the Genus database with same CATH homology
 3QUN A;  4USJ A;  4Q1T A;  2BMU A;  3LL5 A;  2X2W A;  2J5V A;  3L86 A;  3AAW A;  2OGX B;  2BRI A;  2V4Y A;  3K4Y A;  2WE4 A;  1E19 A;  1B7B A;  2R8V A;  4OLC A;  2BND A;  3AB4 A;  1YBD A;  3C1N A;  4AXS A;  3K56 A;  4AB7 A;  2R98 A;  3C20 A;  3D2P A;  1OH9 A;  4KZT A;  3D41 A;  3KZF A;  4JZ8 A;  3B8G A;  3K4O A;  4F6T A;  3U6U A;  2J5T A;  2J4J A;  4A7W A;  4NDP A;  2JJX A;  3ZZG A;  2BTY A;  3C1M A;  4NDO A;  3WWM A;  3ZZF A;  2IJ9 A;  1OHB A;  2VA1 A;  2AP9 A;  3D40 A;  2BUF A;  3LL9 A;  2RD5 A;  2BNE A;  2HMF A;  3S6G A;  4NDQ A;  3L76 A;  3QUR A;  4JZ7 A;  3QVF A;  4NDR A;  3LKK A;  3EK6 A;  4F6T B;  4JZ9 A;  2BNF A;  2J0X A;  2J0W A;  2W21 A;  3S6K A;  2WXB A;  4I49 A;  3ZZH A;  3T7B A;  3NWY A;  2AKO A;  3K52 A;  2OGX A;  2JI5 A;  3AB2 A;  1OHA A;  2V5H A;  2BRX A;  2JJ4 A;  4NDQ B;  3QUO A;  3QVH A;  2CDQ A;  4NDR B;  2J4L A;  3EK5 A;  1Z9D A;  3ZZI A;  4NDP B;  1GS5 A;  3D2M A;  3WWN A;  4NDO B;  2A1F A;  2E9Y A;  2J4K A;  4A7X A;  3S6H A;  2WE5 A;  1GSJ A;  3TVI A; 
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similar chains in the pdb database (?% sequence similarity)

 
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