3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Gamma-glutamyl kinase related protein
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
3C20A 1OHBA 2AP9A 3QVHA 2J0WA 3L86A 2JI5A 3ZZHA 2VA1A 3AB2A 2OGXA 4OLCA 4NDQA 4AXSA 4NDOA 2J5VA 3TVIA 4A7WA 3ZZIA 2J4KA 1YBDA 4F6TA 3QVFA 2BNFA 2WXBA 3U6UA 2J0XA 4NDPA 1Z9DA 2A1FA 3LKKA 3K52A 1OHAA 4NDRA 4I49A 3D2MA 3LL5A 2RD5A 4Q1TA 3C1MA 2CDQA 2J4LA 1GS5A 3WWMA 3T7BA 3EK5A 4USJA 2BRIA 2IJ9A 4JZ9A 3QUOA 2J5TA 3D2PA 2W21A 3LL9A 1OH9A 2V4YA 3C1NA 2R8VA 3EK6A 3K4OA 3S6GA 3S6KA 3L76A 4JZ8A 2BMUA 1B7BA 2HMFA 3QURA 3AB4A 4AB7A 1GSJA 2X2WA 2BTYA 3ZZFA 2BNDA 2JJ4A 3D41A 4NDPB 3AAWA 3K56A 4NDRB 3S6HA 2WE4A 2BRXA 3D40A 2AKOA 3K4YA 2BNEA 2BUFA 2E9YA 2OGXB 3B8GA 2JJXA 4NDQB 2J4JA 3QUNA 4NDOB 4A7XA 2WE5A 2V5HA 3NWYA 1E19A 3KZFA 4F6TB 3WWNA 4JZ7A 4KZTA 3ZZGA 2R98A
chains in the Genus database with same CATH superfamily
3C20A 1OHBA 2AP9A 3QVHA 2J0WA 3L86A 2JI5A 3ZZHA 2VA1A 3AB2A 2OGXA 4OLCA 4NDQA 4AXSA 4NDOA 2J5VA 3TVIA 4A7WA 3ZZIA 2J4KA 1YBDA 4F6TA 3QVFA 2BNFA 2WXBA 3U6UA 2J0XA 4NDPA 1Z9DA 2A1FA 3LKKA 3K52A 1OHAA 4NDRA 4I49A 3D2MA 3LL5A 2RD5A 4Q1TA 3C1MA 2CDQA 2J4LA 1GS5A 3WWMA 3T7BA 3EK5A 4USJA 2BRIA 2IJ9A 4JZ9A 3QUOA 2J5TA 3D2PA 2W21A 3LL9A 1OH9A 2V4YA 3C1NA 2R8VA 3EK6A 3K4OA 3S6GA 3S6KA 3L76A 4JZ8A 2BMUA 1B7BA 2HMFA 3QURA 3AB4A 4AB7A 1GSJA 2X2WA 2BTYA 3ZZFA 2BNDA 2JJ4A 3D41A 4NDPB 3AAWA 3K56A 4NDRB 3S6HA 2WE4A 2BRXA 3D40A 2AKOA 3K4YA 2BNEA 2BUFA 2E9YA 2OGXB 3B8GA 2JJXA 4NDQB 2J4JA 3QUNA 4NDOB 4A7XA 2WE5A 2V5HA 3NWYA 1E19A 3KZFA 4F6TB 3WWNA 4JZ7A 4KZTA 3ZZGA 2R98A
chains in the Genus database with same CATH topology
3C20A 1OHBA 2AP9A 3QVHA 2J0WA 3L86A 2JI5A 3ZZHA 2VA1A 3AB2A 2OGXA 4OLCA 4NDQA 4AXSA 4NDOA 2J5VA 3TVIA 4A7WA 3ZZIA 2J4KA 1YBDA 4F6TA 3QVFA 2BNFA 2WXBA 3U6UA 2J0XA 4NDPA 1Z9DA 2A1FA 3LKKA 3K52A 1OHAA 4NDRA 4I49A 3D2MA 3LL5A 2RD5A 4Q1TA 3C1MA 2CDQA 2J4LA 1GS5A 3WWMA 3T7BA 3EK5A 4USJA 2BRIA 2IJ9A 4JZ9A 3QUOA 2J5TA 3D2PA 2W21A 3LL9A 1OH9A 2V4YA 3C1NA 2R8VA 3EK6A 3K4OA 3S6GA 3S6KA 3L76A 4JZ8A 2BMUA 1B7BA 2HMFA 3QURA 3AB4A 4AB7A 1GSJA 2X2WA 2BTYA 3ZZFA 2BNDA 2JJ4A 3D41A 4NDPB 3AAWA 3K56A 4NDRB 3S6HA 2WE4A 2BRXA 3D40A 2AKOA 3K4YA 2BNEA 2BUFA 2E9YA 2OGXB 3B8GA 2JJXA 4NDQB 2J4JA 3QUNA 4NDOB 4A7XA 2WE5A 2V5HA 3NWYA 1E19A 3KZFA 4F6TB 3WWNA 4JZ7A 4KZTA 3ZZGA 2R98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C20 A;  1OHB A;  2AP9 A;  3QVH A;  2J0W A;  3L86 A;  2JI5 A;  3ZZH A;  2VA1 A;  3AB2 A;  2OGX A;  4OLC A;  4NDQ A;  4AXS A;  4NDO A;  2J5V A;  3TVI A;  4A7W A;  3ZZI A;  2J4K A;  1YBD A;  4F6T A;  3QVF A;  2BNF A;  2WXB A;  3U6U A;  2J0X A;  4NDP A;  1Z9D A;  2A1F A;  3LKK A;  3K52 A;  1OHA A;  4NDR A;  4I49 A;  3D2M A;  3LL5 A;  2RD5 A;  4Q1T A;  3C1M A;  2CDQ A;  2J4L A;  1GS5 A;  3WWM A;  3T7B A;  3EK5 A;  4USJ A;  2BRI A;  2IJ9 A;  4JZ9 A;  3QUO A;  2J5T A;  3D2P A;  2W21 A;  3LL9 A;  1OH9 A;  2V4Y A;  3C1N A;  2R8V A;  3EK6 A;  3K4O A;  3S6G A;  3S6K A;  3L76 A;  4JZ8 A;  2BMU A;  1B7B A;  2HMF A;  3QUR A;  3AB4 A;  4AB7 A;  1GSJ A;  2X2W A;  2BTY A;  3ZZF A;  2BND A;  2JJ4 A;  3D41 A;  4NDP B;  3AAW A;  3K56 A;  4NDR B;  3S6H A;  2WE4 A;  2BRX A;  3D40 A;  2AKO A;  3K4Y A;  2BNE A;  2BUF A;  2E9Y A;  2OGX B;  3B8G A;  2JJX A;  4NDQ B;  2J4J A;  3QUN A;  4NDO B;  4A7X A;  2WE5 A;  2V5H A;  3NWY A;  1E19 A;  3KZF A;  4F6T B;  3WWN A;  4JZ7 A;  4KZT A;  3ZZG A;  2R98 A; 
#chains in the Genus database with same CATH topology
 3C20 A;  1OHB A;  2AP9 A;  3QVH A;  2J0W A;  3L86 A;  2JI5 A;  3ZZH A;  2VA1 A;  3AB2 A;  2OGX A;  4OLC A;  4NDQ A;  4AXS A;  4NDO A;  2J5V A;  3TVI A;  4A7W A;  3ZZI A;  2J4K A;  1YBD A;  4F6T A;  3QVF A;  2BNF A;  2WXB A;  3U6U A;  2J0X A;  4NDP A;  1Z9D A;  2A1F A;  3LKK A;  3K52 A;  1OHA A;  4NDR A;  4I49 A;  3D2M A;  3LL5 A;  2RD5 A;  4Q1T A;  3C1M A;  2CDQ A;  2J4L A;  1GS5 A;  3WWM A;  3T7B A;  3EK5 A;  4USJ A;  2BRI A;  2IJ9 A;  4JZ9 A;  3QUO A;  2J5T A;  3D2P A;  2W21 A;  3LL9 A;  1OH9 A;  2V4Y A;  3C1N A;  2R8V A;  3EK6 A;  3K4O A;  3S6G A;  3S6K A;  3L76 A;  4JZ8 A;  2BMU A;  1B7B A;  2HMF A;  3QUR A;  3AB4 A;  4AB7 A;  1GSJ A;  2X2W A;  2BTY A;  3ZZF A;  2BND A;  2JJ4 A;  3D41 A;  4NDP B;  3AAW A;  3K56 A;  4NDR B;  3S6H A;  2WE4 A;  2BRX A;  3D40 A;  2AKO A;  3K4Y A;  2BNE A;  2BUF A;  2E9Y A;  2OGX B;  3B8G A;  2JJX A;  4NDQ B;  2J4J A;  3QUN A;  4NDO B;  4A7X A;  2WE5 A;  2V5H A;  3NWY A;  1E19 A;  3KZF A;  4F6T B;  3WWN A;  4JZ7 A;  4KZT A;  3ZZG A;  2R98 A; 
#chains in the Genus database with same CATH homology
 3C20 A;  1OHB A;  2AP9 A;  3QVH A;  2J0W A;  3L86 A;  2JI5 A;  3ZZH A;  2VA1 A;  3AB2 A;  2OGX A;  4OLC A;  4NDQ A;  4AXS A;  4NDO A;  2J5V A;  3TVI A;  4A7W A;  3ZZI A;  2J4K A;  1YBD A;  4F6T A;  3QVF A;  2BNF A;  2WXB A;  3U6U A;  2J0X A;  4NDP A;  1Z9D A;  2A1F A;  3LKK A;  3K52 A;  1OHA A;  4NDR A;  4I49 A;  3D2M A;  3LL5 A;  2RD5 A;  4Q1T A;  3C1M A;  2CDQ A;  2J4L A;  1GS5 A;  3WWM A;  3T7B A;  3EK5 A;  4USJ A;  2BRI A;  2IJ9 A;  4JZ9 A;  3QUO A;  2J5T A;  3D2P A;  2W21 A;  3LL9 A;  1OH9 A;  2V4Y A;  3C1N A;  2R8V A;  3EK6 A;  3K4O A;  3S6G A;  3S6K A;  3L76 A;  4JZ8 A;  2BMU A;  1B7B A;  2HMF A;  3QUR A;  3AB4 A;  4AB7 A;  1GSJ A;  2X2W A;  2BTY A;  3ZZF A;  2BND A;  2JJ4 A;  3D41 A;  4NDP B;  3AAW A;  3K56 A;  4NDR B;  3S6H A;  2WE4 A;  2BRX A;  3D40 A;  2AKO A;  3K4Y A;  2BNE A;  2BUF A;  2E9Y A;  2OGX B;  3B8G A;  2JJX A;  4NDQ B;  2J4J A;  3QUN A;  4NDO B;  4A7X A;  2WE5 A;  2V5H A;  3NWY A;  1E19 A;  3KZF A;  4F6T B;  3WWN A;  4JZ7 A;  4KZT A;  3ZZG A;  2R98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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