3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Gamma-glutamyl kinase related protein
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
molecule tags Transferase
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
3ZZFA 3ZZIA 4NDOB 3C1MA 3QURA 3S6HA 3T7BA 3QVFA 2AKOA 4NDOA 2BNFA 4A7WA 2OGXA 2E9YA 3QUOA 2IJ9A 2V5HA 3ZZGA 3B8GA 3LL9A 2WXBA 4NDQB 3AB4A 2JJ4A 2BRIA 1E19A 3TVIA 1OH9A 2BNDA 3K56A 2RD5A 1OHAA 2BMUA 4NDQA 3D40A 2JI5A 3NWYA 4JZ8A 4NDRB 3L86A 4F6TB 2V4YA 3K4YA 3S6KA 3K52A 4Q1TA 1B7BA 3D2MA 2J4LA 4NDPB 4NDRA 3EK5A 2J0WA 3QUNA 3EK6A 3D41A 3WWNA 2HMFA 2BTYA 3KZFA 3S6GA 3C1NA 4OLCA 2BRXA 2CDQA 2J5TA 3QVHA 3AAWA 2AP9A 2J0XA 2X2WA 4I49A 2VA1A 4AXSA 3ZZHA 1GSJA 4KZTA 4F6TA 2BNEA 2J5VA 2WE4A 3L76A 2OGXB 3AB2A 4A7XA 4JZ7A 4NDPA 3LL5A 3K4OA 2J4JA 1YBDA 1OHBA 1Z9DA 2A1FA 3C20A 2BUFA 4AB7A 2J4KA 2R98A 1GS5A 2R8VA 2W21A 3WWMA 4JZ9A 3D2PA 2WE5A 3LKKA 3U6UA 4USJA 2JJXA
chains in the Genus database with same CATH superfamily
3ZZFA 3ZZIA 4NDOB 3C1MA 3QURA 3S6HA 3T7BA 3QVFA 2AKOA 4NDOA 2BNFA 4A7WA 2OGXA 2E9YA 3QUOA 2IJ9A 2V5HA 3ZZGA 3B8GA 3LL9A 2WXBA 4NDQB 3AB4A 2JJ4A 2BRIA 1E19A 3TVIA 1OH9A 2BNDA 3K56A 2RD5A 1OHAA 2BMUA 4NDQA 3D40A 2JI5A 3NWYA 4JZ8A 4NDRB 3L86A 4F6TB 2V4YA 3K4YA 3S6KA 3K52A 4Q1TA 1B7BA 3D2MA 2J4LA 4NDPB 4NDRA 3EK5A 2J0WA 3QUNA 3EK6A 3D41A 3WWNA 2HMFA 2BTYA 3KZFA 3S6GA 3C1NA 4OLCA 2BRXA 2CDQA 2J5TA 3QVHA 3AAWA 2AP9A 2J0XA 2X2WA 4I49A 2VA1A 4AXSA 3ZZHA 1GSJA 4KZTA 4F6TA 2BNEA 2J5VA 2WE4A 3L76A 2OGXB 3AB2A 4A7XA 4JZ7A 4NDPA 3LL5A 3K4OA 2J4JA 1YBDA 1OHBA 1Z9DA 2A1FA 3C20A 2BUFA 4AB7A 2J4KA 2R98A 1GS5A 2R8VA 2W21A 3WWMA 4JZ9A 3D2PA 2WE5A 3LKKA 3U6UA 4USJA 2JJXA
chains in the Genus database with same CATH topology
3ZZFA 3ZZIA 4NDOB 3C1MA 3QURA 3S6HA 3T7BA 3QVFA 2AKOA 4NDOA 2BNFA 4A7WA 2OGXA 2E9YA 3QUOA 2IJ9A 2V5HA 3ZZGA 3B8GA 3LL9A 2WXBA 4NDQB 3AB4A 2JJ4A 2BRIA 1E19A 3TVIA 1OH9A 2BNDA 3K56A 2RD5A 1OHAA 2BMUA 4NDQA 3D40A 2JI5A 3NWYA 4JZ8A 4NDRB 3L86A 4F6TB 2V4YA 3K4YA 3S6KA 3K52A 4Q1TA 1B7BA 3D2MA 2J4LA 4NDPB 4NDRA 3EK5A 2J0WA 3QUNA 3EK6A 3D41A 3WWNA 2HMFA 2BTYA 3KZFA 3S6GA 3C1NA 4OLCA 2BRXA 2CDQA 2J5TA 3QVHA 3AAWA 2AP9A 2J0XA 2X2WA 4I49A 2VA1A 4AXSA 3ZZHA 1GSJA 4KZTA 4F6TA 2BNEA 2J5VA 2WE4A 3L76A 2OGXB 3AB2A 4A7XA 4JZ7A 4NDPA 3LL5A 3K4OA 2J4JA 1YBDA 1OHBA 1Z9DA 2A1FA 3C20A 2BUFA 4AB7A 2J4KA 2R98A 1GS5A 2R8VA 2W21A 3WWMA 4JZ9A 3D2PA 2WE5A 3LKKA 3U6UA 4USJA 2JJXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZZF A;  3ZZI A;  4NDO B;  3C1M A;  3QUR A;  3S6H A;  3T7B A;  3QVF A;  2AKO A;  4NDO A;  2BNF A;  4A7W A;  2OGX A;  2E9Y A;  3QUO A;  2IJ9 A;  2V5H A;  3ZZG A;  3B8G A;  3LL9 A;  2WXB A;  4NDQ B;  3AB4 A;  2JJ4 A;  2BRI A;  1E19 A;  3TVI A;  1OH9 A;  2BND A;  3K56 A;  2RD5 A;  1OHA A;  2BMU A;  4NDQ A;  3D40 A;  2JI5 A;  3NWY A;  4JZ8 A;  4NDR B;  3L86 A;  4F6T B;  2V4Y A;  3K4Y A;  3S6K A;  3K52 A;  4Q1T A;  1B7B A;  3D2M A;  2J4L A;  4NDP B;  4NDR A;  3EK5 A;  2J0W A;  3QUN A;  3EK6 A;  3D41 A;  3WWN A;  2HMF A;  2BTY A;  3KZF A;  3S6G A;  3C1N A;  4OLC A;  2BRX A;  2CDQ A;  2J5T A;  3QVH A;  3AAW A;  2AP9 A;  2J0X A;  2X2W A;  4I49 A;  2VA1 A;  4AXS A;  3ZZH A;  1GSJ A;  4KZT A;  4F6T A;  2BNE A;  2J5V A;  2WE4 A;  3L76 A;  2OGX B;  3AB2 A;  4A7X A;  4JZ7 A;  4NDP A;  3LL5 A;  3K4O A;  2J4J A;  1YBD A;  1OHB A;  1Z9D A;  2A1F A;  3C20 A;  2BUF A;  4AB7 A;  2J4K A;  2R98 A;  1GS5 A;  2R8V A;  2W21 A;  3WWM A;  4JZ9 A;  3D2P A;  2WE5 A;  3LKK A;  3U6U A;  4USJ A;  2JJX A; 
#chains in the Genus database with same CATH topology
 3ZZF A;  3ZZI A;  4NDO B;  3C1M A;  3QUR A;  3S6H A;  3T7B A;  3QVF A;  2AKO A;  4NDO A;  2BNF A;  4A7W A;  2OGX A;  2E9Y A;  3QUO A;  2IJ9 A;  2V5H A;  3ZZG A;  3B8G A;  3LL9 A;  2WXB A;  4NDQ B;  3AB4 A;  2JJ4 A;  2BRI A;  1E19 A;  3TVI A;  1OH9 A;  2BND A;  3K56 A;  2RD5 A;  1OHA A;  2BMU A;  4NDQ A;  3D40 A;  2JI5 A;  3NWY A;  4JZ8 A;  4NDR B;  3L86 A;  4F6T B;  2V4Y A;  3K4Y A;  3S6K A;  3K52 A;  4Q1T A;  1B7B A;  3D2M A;  2J4L A;  4NDP B;  4NDR A;  3EK5 A;  2J0W A;  3QUN A;  3EK6 A;  3D41 A;  3WWN A;  2HMF A;  2BTY A;  3KZF A;  3S6G A;  3C1N A;  4OLC A;  2BRX A;  2CDQ A;  2J5T A;  3QVH A;  3AAW A;  2AP9 A;  2J0X A;  2X2W A;  4I49 A;  2VA1 A;  4AXS A;  3ZZH A;  1GSJ A;  4KZT A;  4F6T A;  2BNE A;  2J5V A;  2WE4 A;  3L76 A;  2OGX B;  3AB2 A;  4A7X A;  4JZ7 A;  4NDP A;  3LL5 A;  3K4O A;  2J4J A;  1YBD A;  1OHB A;  1Z9D A;  2A1F A;  3C20 A;  2BUF A;  4AB7 A;  2J4K A;  2R98 A;  1GS5 A;  2R8V A;  2W21 A;  3WWM A;  4JZ9 A;  3D2P A;  2WE5 A;  3LKK A;  3U6U A;  4USJ A;  2JJX A; 
#chains in the Genus database with same CATH homology
 3ZZF A;  3ZZI A;  4NDO B;  3C1M A;  3QUR A;  3S6H A;  3T7B A;  3QVF A;  2AKO A;  4NDO A;  2BNF A;  4A7W A;  2OGX A;  2E9Y A;  3QUO A;  2IJ9 A;  2V5H A;  3ZZG A;  3B8G A;  3LL9 A;  2WXB A;  4NDQ B;  3AB4 A;  2JJ4 A;  2BRI A;  1E19 A;  3TVI A;  1OH9 A;  2BND A;  3K56 A;  2RD5 A;  1OHA A;  2BMU A;  4NDQ A;  3D40 A;  2JI5 A;  3NWY A;  4JZ8 A;  4NDR B;  3L86 A;  4F6T B;  2V4Y A;  3K4Y A;  3S6K A;  3K52 A;  4Q1T A;  1B7B A;  3D2M A;  2J4L A;  4NDP B;  4NDR A;  3EK5 A;  2J0W A;  3QUN A;  3EK6 A;  3D41 A;  3WWN A;  2HMF A;  2BTY A;  3KZF A;  3S6G A;  3C1N A;  4OLC A;  2BRX A;  2CDQ A;  2J5T A;  3QVH A;  3AAW A;  2AP9 A;  2J0X A;  2X2W A;  4I49 A;  2VA1 A;  4AXS A;  3ZZH A;  1GSJ A;  4KZT A;  4F6T A;  2BNE A;  2J5V A;  2WE4 A;  3L76 A;  2OGX B;  3AB2 A;  4A7X A;  4JZ7 A;  4NDP A;  3LL5 A;  3K4O A;  2J4J A;  1YBD A;  1OHB A;  1Z9D A;  2A1F A;  3C20 A;  2BUF A;  4AB7 A;  2J4K A;  2R98 A;  1GS5 A;  2R8V A;  2W21 A;  3WWM A;  4JZ9 A;  3D2P A;  2WE5 A;  3LKK A;  3U6U A;  4USJ A;  2JJX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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