3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
b'TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Gamma-glutamyl kinase related protein
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
source organism Thermoplasma acidophilum
molecule tags Transferase
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
4NDQA 4A7XA 4OLCA 2JI5A 2J4JA 2OGXB 4NDRB 2BRIA 4NDPB 3D41A 2J5VA 3AB2A 4AXSA 2X2WA 2AKOA 2VA1A 3C20A 2W21A 4I49A 1OHAA 2A1FA 3WWNA 3ZZGA 4F6TA 2IJ9A 4NDQB 3QUOA 2BNEA 3L86A 3LL9A 3TVIA 3D2PA 1B7BA 3K4OA 2R98A 3C1NA 3WWMA 2HMFA 2JJ4A 3LL5A 3ZZIA 2J5TA 3B8GA 2J4LA 4JZ8A 2BRXA 3QURA 2AP9A 3EK5A 4NDOA 4F6TB 2R8VA 1E19A 3K4YA 1OHBA 2WE4A 2J0WA 2BUFA 3S6GA 4A7WA 2J4KA 2BNDA 2JJXA 1Z9DA 3ZZFA 2BTYA 3S6HA 1GSJA 2V4YA 3AB4A 2BNFA 3QUNA 3ZZHA 3S6KA 3T7BA 1OH9A 3D40A 4JZ7A 2CDQA 4NDOB 1GS5A 3K56A 2J0XA 2WE5A 2BMUA 2E9YA 4AB7A 1YBDA 3QVHA 4JZ9A 2WXBA 2V5HA 3C1MA 4KZTA 2OGXA 4NDRA 3QVFA 3D2MA 4NDPA 3EK6A 3KZFA 2RD5A 3K52A 3L76A 4USJA 4Q1TA 3U6UA 3AAWA 3NWYA 3LKKA
chains in the Genus database with same CATH superfamily
4NDQA 4A7XA 4OLCA 2JI5A 2J4JA 2OGXB 4NDRB 2BRIA 4NDPB 3D41A 2J5VA 3AB2A 4AXSA 2X2WA 2AKOA 2VA1A 3C20A 2W21A 4I49A 1OHAA 2A1FA 3WWNA 3ZZGA 4F6TA 2IJ9A 4NDQB 3QUOA 2BNEA 3L86A 3LL9A 3TVIA 3D2PA 1B7BA 3K4OA 2R98A 3C1NA 3WWMA 2HMFA 2JJ4A 3LL5A 3ZZIA 2J5TA 3B8GA 2J4LA 4JZ8A 2BRXA 3QURA 2AP9A 3EK5A 4NDOA 4F6TB 2R8VA 1E19A 3K4YA 1OHBA 2WE4A 2J0WA 2BUFA 3S6GA 4A7WA 2J4KA 2BNDA 2JJXA 1Z9DA 3ZZFA 2BTYA 3S6HA 1GSJA 2V4YA 3AB4A 2BNFA 3QUNA 3ZZHA 3S6KA 3T7BA 1OH9A 3D40A 4JZ7A 2CDQA 4NDOB 1GS5A 3K56A 2J0XA 2WE5A 2BMUA 2E9YA 4AB7A 1YBDA 3QVHA 4JZ9A 2WXBA 2V5HA 3C1MA 4KZTA 2OGXA 4NDRA 3QVFA 3D2MA 4NDPA 3EK6A 3KZFA 2RD5A 3K52A 3L76A 4USJA 4Q1TA 3U6UA 3AAWA 3NWYA 3LKKA
chains in the Genus database with same CATH topology
4NDQA 4A7XA 4OLCA 2JI5A 2J4JA 2OGXB 4NDRB 2BRIA 4NDPB 3D41A 2J5VA 3AB2A 4AXSA 2X2WA 2AKOA 2VA1A 3C20A 2W21A 4I49A 1OHAA 2A1FA 3WWNA 3ZZGA 4F6TA 2IJ9A 4NDQB 3QUOA 2BNEA 3L86A 3LL9A 3TVIA 3D2PA 1B7BA 3K4OA 2R98A 3C1NA 3WWMA 2HMFA 2JJ4A 3LL5A 3ZZIA 2J5TA 3B8GA 2J4LA 4JZ8A 2BRXA 3QURA 2AP9A 3EK5A 4NDOA 4F6TB 2R8VA 1E19A 3K4YA 1OHBA 2WE4A 2J0WA 2BUFA 3S6GA 4A7WA 2J4KA 2BNDA 2JJXA 1Z9DA 3ZZFA 2BTYA 3S6HA 1GSJA 2V4YA 3AB4A 2BNFA 3QUNA 3ZZHA 3S6KA 3T7BA 1OH9A 3D40A 4JZ7A 2CDQA 4NDOB 1GS5A 3K56A 2J0XA 2WE5A 2BMUA 2E9YA 4AB7A 1YBDA 3QVHA 4JZ9A 2WXBA 2V5HA 3C1MA 4KZTA 2OGXA 4NDRA 3QVFA 3D2MA 4NDPA 3EK6A 3KZFA 2RD5A 3K52A 3L76A 4USJA 4Q1TA 3U6UA 3AAWA 3NWYA 3LKKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDQ A;  4A7X A;  4OLC A;  2JI5 A;  2J4J A;  2OGX B;  4NDR B;  2BRI A;  4NDP B;  3D41 A;  2J5V A;  3AB2 A;  4AXS A;  2X2W A;  2AKO A;  2VA1 A;  3C20 A;  2W21 A;  4I49 A;  1OHA A;  2A1F A;  3WWN A;  3ZZG A;  4F6T A;  2IJ9 A;  4NDQ B;  3QUO A;  2BNE A;  3L86 A;  3LL9 A;  3TVI A;  3D2P A;  1B7B A;  3K4O A;  2R98 A;  3C1N A;  3WWM A;  2HMF A;  2JJ4 A;  3LL5 A;  3ZZI A;  2J5T A;  3B8G A;  2J4L A;  4JZ8 A;  2BRX A;  3QUR A;  2AP9 A;  3EK5 A;  4NDO A;  4F6T B;  2R8V A;  1E19 A;  3K4Y A;  1OHB A;  2WE4 A;  2J0W A;  2BUF A;  3S6G A;  4A7W A;  2J4K A;  2BND A;  2JJX A;  1Z9D A;  3ZZF A;  2BTY A;  3S6H A;  1GSJ A;  2V4Y A;  3AB4 A;  2BNF A;  3QUN A;  3ZZH A;  3S6K A;  3T7B A;  1OH9 A;  3D40 A;  4JZ7 A;  2CDQ A;  4NDO B;  1GS5 A;  3K56 A;  2J0X A;  2WE5 A;  2BMU A;  2E9Y A;  4AB7 A;  1YBD A;  3QVH A;  4JZ9 A;  2WXB A;  2V5H A;  3C1M A;  4KZT A;  2OGX A;  4NDR A;  3QVF A;  3D2M A;  4NDP A;  3EK6 A;  3KZF A;  2RD5 A;  3K52 A;  3L76 A;  4USJ A;  4Q1T A;  3U6U A;  3AAW A;  3NWY A;  3LKK A; 
#chains in the Genus database with same CATH topology
 4NDQ A;  4A7X A;  4OLC A;  2JI5 A;  2J4J A;  2OGX B;  4NDR B;  2BRI A;  4NDP B;  3D41 A;  2J5V A;  3AB2 A;  4AXS A;  2X2W A;  2AKO A;  2VA1 A;  3C20 A;  2W21 A;  4I49 A;  1OHA A;  2A1F A;  3WWN A;  3ZZG A;  4F6T A;  2IJ9 A;  4NDQ B;  3QUO A;  2BNE A;  3L86 A;  3LL9 A;  3TVI A;  3D2P A;  1B7B A;  3K4O A;  2R98 A;  3C1N A;  3WWM A;  2HMF A;  2JJ4 A;  3LL5 A;  3ZZI A;  2J5T A;  3B8G A;  2J4L A;  4JZ8 A;  2BRX A;  3QUR A;  2AP9 A;  3EK5 A;  4NDO A;  4F6T B;  2R8V A;  1E19 A;  3K4Y A;  1OHB A;  2WE4 A;  2J0W A;  2BUF A;  3S6G A;  4A7W A;  2J4K A;  2BND A;  2JJX A;  1Z9D A;  3ZZF A;  2BTY A;  3S6H A;  1GSJ A;  2V4Y A;  3AB4 A;  2BNF A;  3QUN A;  3ZZH A;  3S6K A;  3T7B A;  1OH9 A;  3D40 A;  4JZ7 A;  2CDQ A;  4NDO B;  1GS5 A;  3K56 A;  2J0X A;  2WE5 A;  2BMU A;  2E9Y A;  4AB7 A;  1YBD A;  3QVH A;  4JZ9 A;  2WXB A;  2V5H A;  3C1M A;  4KZT A;  2OGX A;  4NDR A;  3QVF A;  3D2M A;  4NDP A;  3EK6 A;  3KZF A;  2RD5 A;  3K52 A;  3L76 A;  4USJ A;  4Q1T A;  3U6U A;  3AAW A;  3NWY A;  3LKK A; 
#chains in the Genus database with same CATH homology
 4NDQ A;  4A7X A;  4OLC A;  2JI5 A;  2J4J A;  2OGX B;  4NDR B;  2BRI A;  4NDP B;  3D41 A;  2J5V A;  3AB2 A;  4AXS A;  2X2W A;  2AKO A;  2VA1 A;  3C20 A;  2W21 A;  4I49 A;  1OHA A;  2A1F A;  3WWN A;  3ZZG A;  4F6T A;  2IJ9 A;  4NDQ B;  3QUO A;  2BNE A;  3L86 A;  3LL9 A;  3TVI A;  3D2P A;  1B7B A;  3K4O A;  2R98 A;  3C1N A;  3WWM A;  2HMF A;  2JJ4 A;  3LL5 A;  3ZZI A;  2J5T A;  3B8G A;  2J4L A;  4JZ8 A;  2BRX A;  3QUR A;  2AP9 A;  3EK5 A;  4NDO A;  4F6T B;  2R8V A;  1E19 A;  3K4Y A;  1OHB A;  2WE4 A;  2J0W A;  2BUF A;  3S6G A;  4A7W A;  2J4K A;  2BND A;  2JJX A;  1Z9D A;  3ZZF A;  2BTY A;  3S6H A;  1GSJ A;  2V4Y A;  3AB4 A;  2BNF A;  3QUN A;  3ZZH A;  3S6K A;  3T7B A;  1OH9 A;  3D40 A;  4JZ7 A;  2CDQ A;  4NDO B;  1GS5 A;  3K56 A;  2J0X A;  2WE5 A;  2BMU A;  2E9Y A;  4AB7 A;  1YBD A;  3QVH A;  4JZ9 A;  2WXB A;  2V5H A;  3C1M A;  4KZT A;  2OGX A;  4NDR A;  3QVF A;  3D2M A;  4NDP A;  3EK6 A;  3KZF A;  2RD5 A;  3K52 A;  3L76 A;  4USJ A;  4Q1T A;  3U6U A;  3AAW A;  3NWY A;  3LKK A; 
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similar chains in the Genus database (?% sequence similarity)
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