3QVHA

Crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with adp
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
271
structure length
260
Chain Sequence
SGLVPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Transferase
molecule keywords FomA protein
publication title Structural and biochemical insights into the mechanism of fosfomycin phosphorylation by fosfomycin resistance kinase FomA.
pubmed doi rcsb
source organism Streptomyces wedmorensis
total genus 79
structure length 260
sequence length 271
ec nomenclature
pdb deposition date 2011-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3qvhA00
3QVHA 2J4JA 2V4YA 2A1FA 4NDQB 3LL9A 4NDOA 3ZZFA 2RD5A 2BTYA 3AB4A 4NDRB 3C20A 4A7WA 3K52A 2AKOA 4I49A 2J0XA 3EK5A 1OHBA 3KZFA 3D41A 2J0WA 3S6HA 3QUOA 3T7BA 3ZZGA 3AAWA 3EK6A 2BNFA 3NWYA 3ZZIA 1B7BA 2AP9A 4KZTA 4NDQA 3QURA 4AXSA 4JZ7A 3K56A 4NDRA 4JZ9A 3LL5A 4AB7A 2R98A 3S6KA 1OH9A 2W21A 2J5TA 2BNDA 2JJ4A 2HMFA 4A7XA 3C1NA 4USJA 1Z9DA 4Q1TA 4NDPB 3K4OA 3S6GA 4NDOB 3TVIA 2WE4A 3QUNA 1GSJA 3WWNA 1YBDA 2WE5A 1GS5A 1OHAA 2BMUA 1E19A 3U6UA 2BUFA 2IJ9A 2R8VA 2OGXB 4F6TB 3K4YA 2BNEA 3D2MA 3ZZHA 2JJXA 2BRIA 3QVFA 4JZ8A 2J5VA 4NDPA 2BRXA 2WXBA 3L86A 3D2PA 4OLCA 3C1MA 3B8GA 3LKKA 2E9YA 2JI5A 2VA1A 3D40A 3L76A 2J4LA 2J4KA 3WWMA 2CDQA 2X2WA 2V5HA 3AB2A 2OGXA 4F6TA
chains in the Genus database with same CATH superfamily
3QVHA 2J4JA 2V4YA 2A1FA 4NDQB 3LL9A 4NDOA 3ZZFA 2RD5A 2BTYA 3AB4A 4NDRB 3C20A 4A7WA 3K52A 2AKOA 4I49A 2J0XA 3EK5A 1OHBA 3KZFA 3D41A 2J0WA 3S6HA 3QUOA 3T7BA 3ZZGA 3AAWA 3EK6A 2BNFA 3NWYA 3ZZIA 1B7BA 2AP9A 4KZTA 4NDQA 3QURA 4AXSA 4JZ7A 3K56A 4NDRA 4JZ9A 3LL5A 4AB7A 2R98A 3S6KA 1OH9A 2W21A 2J5TA 2BNDA 2JJ4A 2HMFA 4A7XA 3C1NA 4USJA 1Z9DA 4Q1TA 4NDPB 3K4OA 3S6GA 4NDOB 3TVIA 2WE4A 3QUNA 1GSJA 3WWNA 1YBDA 2WE5A 1GS5A 1OHAA 2BMUA 1E19A 3U6UA 2BUFA 2IJ9A 2R8VA 2OGXB 4F6TB 3K4YA 2BNEA 3D2MA 3ZZHA 2JJXA 2BRIA 3QVFA 4JZ8A 2J5VA 4NDPA 2BRXA 2WXBA 3L86A 3D2PA 4OLCA 3C1MA 3B8GA 3LKKA 2E9YA 2JI5A 2VA1A 3D40A 3L76A 2J4LA 2J4KA 3WWMA 2CDQA 2X2WA 2V5HA 3AB2A 2OGXA 4F6TA
chains in the Genus database with same CATH topology
3QVHA 2J4JA 2V4YA 2A1FA 4NDQB 3LL9A 4NDOA 3ZZFA 2RD5A 2BTYA 3AB4A 4NDRB 3C20A 4A7WA 3K52A 2AKOA 4I49A 2J0XA 3EK5A 1OHBA 3KZFA 3D41A 2J0WA 3S6HA 3QUOA 3T7BA 3ZZGA 3AAWA 3EK6A 2BNFA 3NWYA 3ZZIA 1B7BA 2AP9A 4KZTA 4NDQA 3QURA 4AXSA 4JZ7A 3K56A 4NDRA 4JZ9A 3LL5A 4AB7A 2R98A 3S6KA 1OH9A 2W21A 2J5TA 2BNDA 2JJ4A 2HMFA 4A7XA 3C1NA 4USJA 1Z9DA 4Q1TA 4NDPB 3K4OA 3S6GA 4NDOB 3TVIA 2WE4A 3QUNA 1GSJA 3WWNA 1YBDA 2WE5A 1GS5A 1OHAA 2BMUA 1E19A 3U6UA 2BUFA 2IJ9A 2R8VA 2OGXB 4F6TB 3K4YA 2BNEA 3D2MA 3ZZHA 2JJXA 2BRIA 3QVFA 4JZ8A 2J5VA 4NDPA 2BRXA 2WXBA 3L86A 3D2PA 4OLCA 3C1MA 3B8GA 3LKKA 2E9YA 2JI5A 2VA1A 3D40A 3L76A 2J4LA 2J4KA 3WWMA 2CDQA 2X2WA 2V5HA 3AB2A 2OGXA 4F6TA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3QVH A;  2J4J A;  2V4Y A;  2A1F A;  4NDQ B;  3LL9 A;  4NDO A;  3ZZF A;  2RD5 A;  2BTY A;  3AB4 A;  4NDR B;  3C20 A;  4A7W A;  3K52 A;  2AKO A;  4I49 A;  2J0X A;  3EK5 A;  1OHB A;  3KZF A;  3D41 A;  2J0W A;  3S6H A;  3QUO A;  3T7B A;  3ZZG A;  3AAW A;  3EK6 A;  2BNF A;  3NWY A;  3ZZI A;  1B7B A;  2AP9 A;  4KZT A;  4NDQ A;  3QUR A;  4AXS A;  4JZ7 A;  3K56 A;  4NDR A;  4JZ9 A;  3LL5 A;  4AB7 A;  2R98 A;  3S6K A;  1OH9 A;  2W21 A;  2J5T A;  2BND A;  2JJ4 A;  2HMF A;  4A7X A;  3C1N A;  4USJ A;  1Z9D A;  4Q1T A;  4NDP B;  3K4O A;  3S6G A;  4NDO B;  3TVI A;  2WE4 A;  3QUN A;  1GSJ A;  3WWN A;  1YBD A;  2WE5 A;  1GS5 A;  1OHA A;  2BMU A;  1E19 A;  3U6U A;  2BUF A;  2IJ9 A;  2R8V A;  2OGX B;  4F6T B;  3K4Y A;  2BNE A;  3D2M A;  3ZZH A;  2JJX A;  2BRI A;  3QVF A;  4JZ8 A;  2J5V A;  4NDP A;  2BRX A;  2WXB A;  3L86 A;  3D2P A;  4OLC A;  3C1M A;  3B8G A;  3LKK A;  2E9Y A;  2JI5 A;  2VA1 A;  3D40 A;  3L76 A;  2J4L A;  2J4K A;  3WWM A;  2CDQ A;  2X2W A;  2V5H A;  3AB2 A;  2OGX A;  4F6T A; 
#chains in the Genus database with same CATH topology
 3QVH A;  2J4J A;  2V4Y A;  2A1F A;  4NDQ B;  3LL9 A;  4NDO A;  3ZZF A;  2RD5 A;  2BTY A;  3AB4 A;  4NDR B;  3C20 A;  4A7W A;  3K52 A;  2AKO A;  4I49 A;  2J0X A;  3EK5 A;  1OHB A;  3KZF A;  3D41 A;  2J0W A;  3S6H A;  3QUO A;  3T7B A;  3ZZG A;  3AAW A;  3EK6 A;  2BNF A;  3NWY A;  3ZZI A;  1B7B A;  2AP9 A;  4KZT A;  4NDQ A;  3QUR A;  4AXS A;  4JZ7 A;  3K56 A;  4NDR A;  4JZ9 A;  3LL5 A;  4AB7 A;  2R98 A;  3S6K A;  1OH9 A;  2W21 A;  2J5T A;  2BND A;  2JJ4 A;  2HMF A;  4A7X A;  3C1N A;  4USJ A;  1Z9D A;  4Q1T A;  4NDP B;  3K4O A;  3S6G A;  4NDO B;  3TVI A;  2WE4 A;  3QUN A;  1GSJ A;  3WWN A;  1YBD A;  2WE5 A;  1GS5 A;  1OHA A;  2BMU A;  1E19 A;  3U6U A;  2BUF A;  2IJ9 A;  2R8V A;  2OGX B;  4F6T B;  3K4Y A;  2BNE A;  3D2M A;  3ZZH A;  2JJX A;  2BRI A;  3QVF A;  4JZ8 A;  2J5V A;  4NDP A;  2BRX A;  2WXB A;  3L86 A;  3D2P A;  4OLC A;  3C1M A;  3B8G A;  3LKK A;  2E9Y A;  2JI5 A;  2VA1 A;  3D40 A;  3L76 A;  2J4L A;  2J4K A;  3WWM A;  2CDQ A;  2X2W A;  2V5H A;  3AB2 A;  2OGX A;  4F6T A; 
#chains in the Genus database with same CATH homology
 3QVH A;  2J4J A;  2V4Y A;  2A1F A;  4NDQ B;  3LL9 A;  4NDO A;  3ZZF A;  2RD5 A;  2BTY A;  3AB4 A;  4NDR B;  3C20 A;  4A7W A;  3K52 A;  2AKO A;  4I49 A;  2J0X A;  3EK5 A;  1OHB A;  3KZF A;  3D41 A;  2J0W A;  3S6H A;  3QUO A;  3T7B A;  3ZZG A;  3AAW A;  3EK6 A;  2BNF A;  3NWY A;  3ZZI A;  1B7B A;  2AP9 A;  4KZT A;  4NDQ A;  3QUR A;  4AXS A;  4JZ7 A;  3K56 A;  4NDR A;  4JZ9 A;  3LL5 A;  4AB7 A;  2R98 A;  3S6K A;  1OH9 A;  2W21 A;  2J5T A;  2BND A;  2JJ4 A;  2HMF A;  4A7X A;  3C1N A;  4USJ A;  1Z9D A;  4Q1T A;  4NDP B;  3K4O A;  3S6G A;  4NDO B;  3TVI A;  2WE4 A;  3QUN A;  1GSJ A;  3WWN A;  1YBD A;  2WE5 A;  1GS5 A;  1OHA A;  2BMU A;  1E19 A;  3U6U A;  2BUF A;  2IJ9 A;  2R8V A;  2OGX B;  4F6T B;  3K4Y A;  2BNE A;  3D2M A;  3ZZH A;  2JJX A;  2BRI A;  3QVF A;  4JZ8 A;  2J5V A;  4NDP A;  2BRX A;  2WXB A;  3L86 A;  3D2P A;  4OLC A;  3C1M A;  3B8G A;  3LKK A;  2E9Y A;  2JI5 A;  2VA1 A;  3D40 A;  3L76 A;  2J4L A;  2J4K A;  3WWM A;  2CDQ A;  2X2W A;  2V5H A;  3AB2 A;  2OGX A;  4F6T A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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