2OGXA

The crystal structure of the molybdenum storage protein from azotobacter vinelandii loaded with polyoxotungstates (wsto)
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
246
structure length
246
Chain Sequence
GKRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Towards Biological Supramolecular Chemistry: A Variety of Pocket-Templated, Individual Metal Oxide Cluster Nucleations in the Cavity of a Mo/W-Storage Protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit alpha
total genus 73
structure length 246
sequence length 246
ec nomenclature
pdb deposition date 2007-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ogxA00
3QVFA 2W21A 2V5HA 3T7BA 4NDOB 2J4KA 3L86A 1OHBA 4NDRB 2J4LA 2VA1A 4F6TB 2R98A 1OHAA 3D2PA 3S6KA 3ZZFA 3ZZHA 2AKOA 4AXSA 2J0WA 2BRXA 3NWYA 2J0XA 3K56A 2R8VA 2A1FA 3WWMA 3QVHA 2E9YA 3K4YA 3L76A 3QUOA 2BNFA 2JJ4A 2WE4A 4NDOA 4A7WA 1Z9DA 4JZ7A 3C20A 2BNDA 4KZTA 2AP9A 3U6UA 2BTYA 3QURA 2OGXB 3AB2A 3K4OA 3S6HA 2CDQA 1GS5A 3B8GA 4NDPA 4OLCA 2V4YA 4NDQB 3TVIA 4A7XA 2BUFA 2X2WA 4I49A 3S6GA 4JZ9A 3C1MA 3ZZGA 1E19A 2WE5A 3C1NA 3D40A 3LL5A 3D2MA 3KZFA 3K52A 2WXBA 4AB7A 2OGXA 3AAWA 3QUNA 2J5TA 2BNEA 4NDPB 3WWNA 4Q1TA 4NDQA 4NDRA 1GSJA 1OH9A 4F6TA 4USJA 1B7BA 2JJXA 4JZ8A 2J5VA 3EK6A 3LL9A 2IJ9A 1YBDA 2BRIA 2HMFA 2BMUA 3EK5A 3ZZIA 2JI5A 2RD5A 3AB4A 3D41A 3LKKA 2J4JA
chains in the Genus database with same CATH superfamily
3QVFA 2W21A 2V5HA 3T7BA 4NDOB 2J4KA 3L86A 1OHBA 4NDRB 2J4LA 2VA1A 4F6TB 2R98A 1OHAA 3D2PA 3S6KA 3ZZFA 3ZZHA 2AKOA 4AXSA 2J0WA 2BRXA 3NWYA 2J0XA 3K56A 2R8VA 2A1FA 3WWMA 3QVHA 2E9YA 3K4YA 3L76A 3QUOA 2BNFA 2JJ4A 2WE4A 4NDOA 4A7WA 1Z9DA 4JZ7A 3C20A 2BNDA 4KZTA 2AP9A 3U6UA 2BTYA 3QURA 2OGXB 3AB2A 3K4OA 3S6HA 2CDQA 1GS5A 3B8GA 4NDPA 4OLCA 2V4YA 4NDQB 3TVIA 4A7XA 2BUFA 2X2WA 4I49A 3S6GA 4JZ9A 3C1MA 3ZZGA 1E19A 2WE5A 3C1NA 3D40A 3LL5A 3D2MA 3KZFA 3K52A 2WXBA 4AB7A 2OGXA 3AAWA 3QUNA 2J5TA 2BNEA 4NDPB 3WWNA 4Q1TA 4NDQA 4NDRA 1GSJA 1OH9A 4F6TA 4USJA 1B7BA 2JJXA 4JZ8A 2J5VA 3EK6A 3LL9A 2IJ9A 1YBDA 2BRIA 2HMFA 2BMUA 3EK5A 3ZZIA 2JI5A 2RD5A 3AB4A 3D41A 3LKKA 2J4JA
chains in the Genus database with same CATH topology
3QVFA 2W21A 2V5HA 3T7BA 4NDOB 2J4KA 3L86A 1OHBA 4NDRB 2J4LA 2VA1A 4F6TB 2R98A 1OHAA 3D2PA 3S6KA 3ZZFA 3ZZHA 2AKOA 4AXSA 2J0WA 2BRXA 3NWYA 2J0XA 3K56A 2R8VA 2A1FA 3WWMA 3QVHA 2E9YA 3K4YA 3L76A 3QUOA 2BNFA 2JJ4A 2WE4A 4NDOA 4A7WA 1Z9DA 4JZ7A 3C20A 2BNDA 4KZTA 2AP9A 3U6UA 2BTYA 3QURA 2OGXB 3AB2A 3K4OA 3S6HA 2CDQA 1GS5A 3B8GA 4NDPA 4OLCA 2V4YA 4NDQB 3TVIA 4A7XA 2BUFA 2X2WA 4I49A 3S6GA 4JZ9A 3C1MA 3ZZGA 1E19A 2WE5A 3C1NA 3D40A 3LL5A 3D2MA 3KZFA 3K52A 2WXBA 4AB7A 2OGXA 3AAWA 3QUNA 2J5TA 2BNEA 4NDPB 3WWNA 4Q1TA 4NDQA 4NDRA 1GSJA 1OH9A 4F6TA 4USJA 1B7BA 2JJXA 4JZ8A 2J5VA 3EK6A 3LL9A 2IJ9A 1YBDA 2BRIA 2HMFA 2BMUA 3EK5A 3ZZIA 2JI5A 2RD5A 3AB4A 3D41A 3LKKA 2J4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QVF A;  2W21 A;  2V5H A;  3T7B A;  4NDO B;  2J4K A;  3L86 A;  1OHB A;  4NDR B;  2J4L A;  2VA1 A;  4F6T B;  2R98 A;  1OHA A;  3D2P A;  3S6K A;  3ZZF A;  3ZZH A;  2AKO A;  4AXS A;  2J0W A;  2BRX A;  3NWY A;  2J0X A;  3K56 A;  2R8V A;  2A1F A;  3WWM A;  3QVH A;  2E9Y A;  3K4Y A;  3L76 A;  3QUO A;  2BNF A;  2JJ4 A;  2WE4 A;  4NDO A;  4A7W A;  1Z9D A;  4JZ7 A;  3C20 A;  2BND A;  4KZT A;  2AP9 A;  3U6U A;  2BTY A;  3QUR A;  2OGX B;  3AB2 A;  3K4O A;  3S6H A;  2CDQ A;  1GS5 A;  3B8G A;  4NDP A;  4OLC A;  2V4Y A;  4NDQ B;  3TVI A;  4A7X A;  2BUF A;  2X2W A;  4I49 A;  3S6G A;  4JZ9 A;  3C1M A;  3ZZG A;  1E19 A;  2WE5 A;  3C1N A;  3D40 A;  3LL5 A;  3D2M A;  3KZF A;  3K52 A;  2WXB A;  4AB7 A;  2OGX A;  3AAW A;  3QUN A;  2J5T A;  2BNE A;  4NDP B;  3WWN A;  4Q1T A;  4NDQ A;  4NDR A;  1GSJ A;  1OH9 A;  4F6T A;  4USJ A;  1B7B A;  2JJX A;  4JZ8 A;  2J5V A;  3EK6 A;  3LL9 A;  2IJ9 A;  1YBD A;  2BRI A;  2HMF A;  2BMU A;  3EK5 A;  3ZZI A;  2JI5 A;  2RD5 A;  3AB4 A;  3D41 A;  3LKK A;  2J4J A; 
#chains in the Genus database with same CATH topology
 3QVF A;  2W21 A;  2V5H A;  3T7B A;  4NDO B;  2J4K A;  3L86 A;  1OHB A;  4NDR B;  2J4L A;  2VA1 A;  4F6T B;  2R98 A;  1OHA A;  3D2P A;  3S6K A;  3ZZF A;  3ZZH A;  2AKO A;  4AXS A;  2J0W A;  2BRX A;  3NWY A;  2J0X A;  3K56 A;  2R8V A;  2A1F A;  3WWM A;  3QVH A;  2E9Y A;  3K4Y A;  3L76 A;  3QUO A;  2BNF A;  2JJ4 A;  2WE4 A;  4NDO A;  4A7W A;  1Z9D A;  4JZ7 A;  3C20 A;  2BND A;  4KZT A;  2AP9 A;  3U6U A;  2BTY A;  3QUR A;  2OGX B;  3AB2 A;  3K4O A;  3S6H A;  2CDQ A;  1GS5 A;  3B8G A;  4NDP A;  4OLC A;  2V4Y A;  4NDQ B;  3TVI A;  4A7X A;  2BUF A;  2X2W A;  4I49 A;  3S6G A;  4JZ9 A;  3C1M A;  3ZZG A;  1E19 A;  2WE5 A;  3C1N A;  3D40 A;  3LL5 A;  3D2M A;  3KZF A;  3K52 A;  2WXB A;  4AB7 A;  2OGX A;  3AAW A;  3QUN A;  2J5T A;  2BNE A;  4NDP B;  3WWN A;  4Q1T A;  4NDQ A;  4NDR A;  1GSJ A;  1OH9 A;  4F6T A;  4USJ A;  1B7B A;  2JJX A;  4JZ8 A;  2J5V A;  3EK6 A;  3LL9 A;  2IJ9 A;  1YBD A;  2BRI A;  2HMF A;  2BMU A;  3EK5 A;  3ZZI A;  2JI5 A;  2RD5 A;  3AB4 A;  3D41 A;  3LKK A;  2J4J A; 
#chains in the Genus database with same CATH homology
 3QVF A;  2W21 A;  2V5H A;  3T7B A;  4NDO B;  2J4K A;  3L86 A;  1OHB A;  4NDR B;  2J4L A;  2VA1 A;  4F6T B;  2R98 A;  1OHA A;  3D2P A;  3S6K A;  3ZZF A;  3ZZH A;  2AKO A;  4AXS A;  2J0W A;  2BRX A;  3NWY A;  2J0X A;  3K56 A;  2R8V A;  2A1F A;  3WWM A;  3QVH A;  2E9Y A;  3K4Y A;  3L76 A;  3QUO A;  2BNF A;  2JJ4 A;  2WE4 A;  4NDO A;  4A7W A;  1Z9D A;  4JZ7 A;  3C20 A;  2BND A;  4KZT A;  2AP9 A;  3U6U A;  2BTY A;  3QUR A;  2OGX B;  3AB2 A;  3K4O A;  3S6H A;  2CDQ A;  1GS5 A;  3B8G A;  4NDP A;  4OLC A;  2V4Y A;  4NDQ B;  3TVI A;  4A7X A;  2BUF A;  2X2W A;  4I49 A;  3S6G A;  4JZ9 A;  3C1M A;  3ZZG A;  1E19 A;  2WE5 A;  3C1N A;  3D40 A;  3LL5 A;  3D2M A;  3KZF A;  3K52 A;  2WXB A;  4AB7 A;  2OGX A;  3AAW A;  3QUN A;  2J5T A;  2BNE A;  4NDP B;  3WWN A;  4Q1T A;  4NDQ A;  4NDR A;  1GSJ A;  1OH9 A;  4F6T A;  4USJ A;  1B7B A;  2JJX A;  4JZ8 A;  2J5V A;  3EK6 A;  3LL9 A;  2IJ9 A;  1YBD A;  2BRI A;  2HMF A;  2BMU A;  3EK5 A;  3ZZI A;  2JI5 A;  2RD5 A;  3AB4 A;  3D41 A;  3LKK A;  2J4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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