2JJ4A

The complex of pii and acetylglutamate kinase from synechococcus elongatus pcc7942
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
284
structure length
284
Chain Sequence
AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ACETYLGLUTAMATE KINASE
publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
total genus 81
structure length 284
sequence length 284
chains with identical sequence B, C
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2jj4A00
2V5HA 3EK6A 4NDQB 3LL9A 2BMUA 4JZ7A 3S6KA 3D2MA 4NDPB 2J0XA 2VA1A 3S6GA 3K52A 2HMFA 3QUNA 3C1NA 1OHBA 3C1MA 3K4OA 3AAWA 2IJ9A 1OH9A 4JZ8A 1E19A 2BRXA 2J0WA 3T7BA 3ZZHA 3D40A 3ZZGA 4AB7A 2R98A 2A1FA 4KZTA 3D41A 3WWNA 1Z9DA 4NDOB 2W21A 3LL5A 2WE5A 2J5VA 3QVHA 2WXBA 4NDQA 3QUOA 4JZ9A 3L86A 3AB4A 3D2PA 3NWYA 4NDPA 2E9YA 3WWMA 3U6UA 3EK5A 4F6TB 1B7BA 4A7WA 4AXSA 2AP9A 2OGXB 4USJA 2BUFA 3L76A 2AKOA 2JJXA 2JJ4A 2BNFA 2CDQA 2RD5A 2BNEA 2J5TA 4F6TA 3LKKA 3ZZFA 3ZZIA 2V4YA 4A7XA 3B8GA 3KZFA 3K4YA 4NDRB 3S6HA 4NDOA 2BNDA 4OLCA 3TVIA 2R8VA 3QVFA 2BRIA 4I49A 2BTYA 2J4LA 4Q1TA 2JI5A 3K56A 2J4JA 4NDRA 1OHAA 1GS5A 3AB2A 2WE4A 2J4KA 1GSJA 2OGXA 1YBDA 2X2WA 3C20A 3QURA
chains in the Genus database with same CATH superfamily
2V5HA 3EK6A 4NDQB 3LL9A 2BMUA 4JZ7A 3S6KA 3D2MA 4NDPB 2J0XA 2VA1A 3S6GA 3K52A 2HMFA 3QUNA 3C1NA 1OHBA 3C1MA 3K4OA 3AAWA 2IJ9A 1OH9A 4JZ8A 1E19A 2BRXA 2J0WA 3T7BA 3ZZHA 3D40A 3ZZGA 4AB7A 2R98A 2A1FA 4KZTA 3D41A 3WWNA 1Z9DA 4NDOB 2W21A 3LL5A 2WE5A 2J5VA 3QVHA 2WXBA 4NDQA 3QUOA 4JZ9A 3L86A 3AB4A 3D2PA 3NWYA 4NDPA 2E9YA 3WWMA 3U6UA 3EK5A 4F6TB 1B7BA 4A7WA 4AXSA 2AP9A 2OGXB 4USJA 2BUFA 3L76A 2AKOA 2JJXA 2JJ4A 2BNFA 2CDQA 2RD5A 2BNEA 2J5TA 4F6TA 3LKKA 3ZZFA 3ZZIA 2V4YA 4A7XA 3B8GA 3KZFA 3K4YA 4NDRB 3S6HA 4NDOA 2BNDA 4OLCA 3TVIA 2R8VA 3QVFA 2BRIA 4I49A 2BTYA 2J4LA 4Q1TA 2JI5A 3K56A 2J4JA 4NDRA 1OHAA 1GS5A 3AB2A 2WE4A 2J4KA 1GSJA 2OGXA 1YBDA 2X2WA 3C20A 3QURA
chains in the Genus database with same CATH topology
2V5HA 3EK6A 4NDQB 3LL9A 2BMUA 4JZ7A 3S6KA 3D2MA 4NDPB 2J0XA 2VA1A 3S6GA 3K52A 2HMFA 3QUNA 3C1NA 1OHBA 3C1MA 3K4OA 3AAWA 2IJ9A 1OH9A 4JZ8A 1E19A 2BRXA 2J0WA 3T7BA 3ZZHA 3D40A 3ZZGA 4AB7A 2R98A 2A1FA 4KZTA 3D41A 3WWNA 1Z9DA 4NDOB 2W21A 3LL5A 2WE5A 2J5VA 3QVHA 2WXBA 4NDQA 3QUOA 4JZ9A 3L86A 3AB4A 3D2PA 3NWYA 4NDPA 2E9YA 3WWMA 3U6UA 3EK5A 4F6TB 1B7BA 4A7WA 4AXSA 2AP9A 2OGXB 4USJA 2BUFA 3L76A 2AKOA 2JJXA 2JJ4A 2BNFA 2CDQA 2RD5A 2BNEA 2J5TA 4F6TA 3LKKA 3ZZFA 3ZZIA 2V4YA 4A7XA 3B8GA 3KZFA 3K4YA 4NDRB 3S6HA 4NDOA 2BNDA 4OLCA 3TVIA 2R8VA 3QVFA 2BRIA 4I49A 2BTYA 2J4LA 4Q1TA 2JI5A 3K56A 2J4JA 4NDRA 1OHAA 1GS5A 3AB2A 2WE4A 2J4KA 1GSJA 2OGXA 1YBDA 2X2WA 3C20A 3QURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V5H A;  3EK6 A;  4NDQ B;  3LL9 A;  2BMU A;  4JZ7 A;  3S6K A;  3D2M A;  4NDP B;  2J0X A;  2VA1 A;  3S6G A;  3K52 A;  2HMF A;  3QUN A;  3C1N A;  1OHB A;  3C1M A;  3K4O A;  3AAW A;  2IJ9 A;  1OH9 A;  4JZ8 A;  1E19 A;  2BRX A;  2J0W A;  3T7B A;  3ZZH A;  3D40 A;  3ZZG A;  4AB7 A;  2R98 A;  2A1F A;  4KZT A;  3D41 A;  3WWN A;  1Z9D A;  4NDO B;  2W21 A;  3LL5 A;  2WE5 A;  2J5V A;  3QVH A;  2WXB A;  4NDQ A;  3QUO A;  4JZ9 A;  3L86 A;  3AB4 A;  3D2P A;  3NWY A;  4NDP A;  2E9Y A;  3WWM A;  3U6U A;  3EK5 A;  4F6T B;  1B7B A;  4A7W A;  4AXS A;  2AP9 A;  2OGX B;  4USJ A;  2BUF A;  3L76 A;  2AKO A;  2JJX A;  2JJ4 A;  2BNF A;  2CDQ A;  2RD5 A;  2BNE A;  2J5T A;  4F6T A;  3LKK A;  3ZZF A;  3ZZI A;  2V4Y A;  4A7X A;  3B8G A;  3KZF A;  3K4Y A;  4NDR B;  3S6H A;  4NDO A;  2BND A;  4OLC A;  3TVI A;  2R8V A;  3QVF A;  2BRI A;  4I49 A;  2BTY A;  2J4L A;  4Q1T A;  2JI5 A;  3K56 A;  2J4J A;  4NDR A;  1OHA A;  1GS5 A;  3AB2 A;  2WE4 A;  2J4K A;  1GSJ A;  2OGX A;  1YBD A;  2X2W A;  3C20 A;  3QUR A; 
#chains in the Genus database with same CATH topology
 2V5H A;  3EK6 A;  4NDQ B;  3LL9 A;  2BMU A;  4JZ7 A;  3S6K A;  3D2M A;  4NDP B;  2J0X A;  2VA1 A;  3S6G A;  3K52 A;  2HMF A;  3QUN A;  3C1N A;  1OHB A;  3C1M A;  3K4O A;  3AAW A;  2IJ9 A;  1OH9 A;  4JZ8 A;  1E19 A;  2BRX A;  2J0W A;  3T7B A;  3ZZH A;  3D40 A;  3ZZG A;  4AB7 A;  2R98 A;  2A1F A;  4KZT A;  3D41 A;  3WWN A;  1Z9D A;  4NDO B;  2W21 A;  3LL5 A;  2WE5 A;  2J5V A;  3QVH A;  2WXB A;  4NDQ A;  3QUO A;  4JZ9 A;  3L86 A;  3AB4 A;  3D2P A;  3NWY A;  4NDP A;  2E9Y A;  3WWM A;  3U6U A;  3EK5 A;  4F6T B;  1B7B A;  4A7W A;  4AXS A;  2AP9 A;  2OGX B;  4USJ A;  2BUF A;  3L76 A;  2AKO A;  2JJX A;  2JJ4 A;  2BNF A;  2CDQ A;  2RD5 A;  2BNE A;  2J5T A;  4F6T A;  3LKK A;  3ZZF A;  3ZZI A;  2V4Y A;  4A7X A;  3B8G A;  3KZF A;  3K4Y A;  4NDR B;  3S6H A;  4NDO A;  2BND A;  4OLC A;  3TVI A;  2R8V A;  3QVF A;  2BRI A;  4I49 A;  2BTY A;  2J4L A;  4Q1T A;  2JI5 A;  3K56 A;  2J4J A;  4NDR A;  1OHA A;  1GS5 A;  3AB2 A;  2WE4 A;  2J4K A;  1GSJ A;  2OGX A;  1YBD A;  2X2W A;  3C20 A;  3QUR A; 
#chains in the Genus database with same CATH homology
 2V5H A;  3EK6 A;  4NDQ B;  3LL9 A;  2BMU A;  4JZ7 A;  3S6K A;  3D2M A;  4NDP B;  2J0X A;  2VA1 A;  3S6G A;  3K52 A;  2HMF A;  3QUN A;  3C1N A;  1OHB A;  3C1M A;  3K4O A;  3AAW A;  2IJ9 A;  1OH9 A;  4JZ8 A;  1E19 A;  2BRX A;  2J0W A;  3T7B A;  3ZZH A;  3D40 A;  3ZZG A;  4AB7 A;  2R98 A;  2A1F A;  4KZT A;  3D41 A;  3WWN A;  1Z9D A;  4NDO B;  2W21 A;  3LL5 A;  2WE5 A;  2J5V A;  3QVH A;  2WXB A;  4NDQ A;  3QUO A;  4JZ9 A;  3L86 A;  3AB4 A;  3D2P A;  3NWY A;  4NDP A;  2E9Y A;  3WWM A;  3U6U A;  3EK5 A;  4F6T B;  1B7B A;  4A7W A;  4AXS A;  2AP9 A;  2OGX B;  4USJ A;  2BUF A;  3L76 A;  2AKO A;  2JJX A;  2JJ4 A;  2BNF A;  2CDQ A;  2RD5 A;  2BNE A;  2J5T A;  4F6T A;  3LKK A;  3ZZF A;  3ZZI A;  2V4Y A;  4A7X A;  3B8G A;  3KZF A;  3K4Y A;  4NDR B;  3S6H A;  4NDO A;  2BND A;  4OLC A;  3TVI A;  2R8V A;  3QVF A;  2BRI A;  4I49 A;  2BTY A;  2J4L A;  4Q1T A;  2JI5 A;  3K56 A;  2J4J A;  4NDR A;  1OHA A;  1GS5 A;  3AB2 A;  2WE4 A;  2J4K A;  1GSJ A;  2OGX A;  1YBD A;  2X2W A;  3C20 A;  3QUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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