2JJ4A

The complex of pii and acetylglutamate kinase from synechococcus elongatus pcc7942
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
284
structure length
284
Chain Sequence
b'AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ACETYLGLUTAMATE KINASE
publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
total genus 81
structure length 284
sequence length 284
chains with identical sequence B, C
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2jj4A00
4F6TB 4NDPB 2WXBA 2J0WA 3B8GA 3S6KA 2AP9A 1OHBA 3D41A 2JI5A 3AB4A 4NDOA 3EK6A 3ZZGA 2OGXA 2J4JA 1B7BA 3T7BA 3K52A 3C1NA 2V5HA 1GSJA 3LL5A 4A7XA 1Z9DA 3D40A 2BRXA 3U6UA 2RD5A 4JZ8A 2BRIA 4NDOB 3AB2A 2OGXB 2IJ9A 3QURA 3KZFA 3D2PA 2J5VA 2R8VA 2J4LA 1YBDA 1GS5A 1OH9A 2A1FA 2VA1A 3AAWA 3C20A 3K4YA 3K56A 3ZZHA 4AXSA 3C1MA 3WWNA 3QUOA 2W21A 3QVFA 3QVHA 2J0XA 4OLCA 2WE5A 2J5TA 2BNDA 4JZ9A 2JJXA 2BTYA 4Q1TA 4NDQA 3S6HA 4AB7A 3LKKA 3D2MA 2BNEA 4NDPA 2JJ4A 3ZZIA 2CDQA 2BNFA 3EK5A 3K4OA 4NDQB 2AKOA 3L76A 2R98A 4NDRA 3NWYA 3ZZFA 2WE4A 3TVIA 2BMUA 3S6GA 4A7WA 3L86A 2HMFA 4JZ7A 2E9YA 2J4KA 3LL9A 2V4YA 4USJA 3QUNA 2BUFA 4NDRB 2X2WA 4F6TA 4KZTA 3WWMA 4I49A 1OHAA 1E19A
chains in the Genus database with same CATH superfamily
4F6TB 4NDPB 2WXBA 2J0WA 3B8GA 3S6KA 2AP9A 1OHBA 3D41A 2JI5A 3AB4A 4NDOA 3EK6A 3ZZGA 2OGXA 2J4JA 1B7BA 3T7BA 3K52A 3C1NA 2V5HA 1GSJA 3LL5A 4A7XA 1Z9DA 3D40A 2BRXA 3U6UA 2RD5A 4JZ8A 2BRIA 4NDOB 3AB2A 2OGXB 2IJ9A 3QURA 3KZFA 3D2PA 2J5VA 2R8VA 2J4LA 1YBDA 1GS5A 1OH9A 2A1FA 2VA1A 3AAWA 3C20A 3K4YA 3K56A 3ZZHA 4AXSA 3C1MA 3WWNA 3QUOA 2W21A 3QVFA 3QVHA 2J0XA 4OLCA 2WE5A 2J5TA 2BNDA 4JZ9A 2JJXA 2BTYA 4Q1TA 4NDQA 3S6HA 4AB7A 3LKKA 3D2MA 2BNEA 4NDPA 2JJ4A 3ZZIA 2CDQA 2BNFA 3EK5A 3K4OA 4NDQB 2AKOA 3L76A 2R98A 4NDRA 3NWYA 3ZZFA 2WE4A 3TVIA 2BMUA 3S6GA 4A7WA 3L86A 2HMFA 4JZ7A 2E9YA 2J4KA 3LL9A 2V4YA 4USJA 3QUNA 2BUFA 4NDRB 2X2WA 4F6TA 4KZTA 3WWMA 4I49A 1OHAA 1E19A
chains in the Genus database with same CATH topology
4F6TB 4NDPB 2WXBA 2J0WA 3B8GA 3S6KA 2AP9A 1OHBA 3D41A 2JI5A 3AB4A 4NDOA 3EK6A 3ZZGA 2OGXA 2J4JA 1B7BA 3T7BA 3K52A 3C1NA 2V5HA 1GSJA 3LL5A 4A7XA 1Z9DA 3D40A 2BRXA 3U6UA 2RD5A 4JZ8A 2BRIA 4NDOB 3AB2A 2OGXB 2IJ9A 3QURA 3KZFA 3D2PA 2J5VA 2R8VA 2J4LA 1YBDA 1GS5A 1OH9A 2A1FA 2VA1A 3AAWA 3C20A 3K4YA 3K56A 3ZZHA 4AXSA 3C1MA 3WWNA 3QUOA 2W21A 3QVFA 3QVHA 2J0XA 4OLCA 2WE5A 2J5TA 2BNDA 4JZ9A 2JJXA 2BTYA 4Q1TA 4NDQA 3S6HA 4AB7A 3LKKA 3D2MA 2BNEA 4NDPA 2JJ4A 3ZZIA 2CDQA 2BNFA 3EK5A 3K4OA 4NDQB 2AKOA 3L76A 2R98A 4NDRA 3NWYA 3ZZFA 2WE4A 3TVIA 2BMUA 3S6GA 4A7WA 3L86A 2HMFA 4JZ7A 2E9YA 2J4KA 3LL9A 2V4YA 4USJA 3QUNA 2BUFA 4NDRB 2X2WA 4F6TA 4KZTA 3WWMA 4I49A 1OHAA 1E19A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F6T B;  4NDP B;  2WXB A;  2J0W A;  3B8G A;  3S6K A;  2AP9 A;  1OHB A;  3D41 A;  2JI5 A;  3AB4 A;  4NDO A;  3EK6 A;  3ZZG A;  2OGX A;  2J4J A;  1B7B A;  3T7B A;  3K52 A;  3C1N A;  2V5H A;  1GSJ A;  3LL5 A;  4A7X A;  1Z9D A;  3D40 A;  2BRX A;  3U6U A;  2RD5 A;  4JZ8 A;  2BRI A;  4NDO B;  3AB2 A;  2OGX B;  2IJ9 A;  3QUR A;  3KZF A;  3D2P A;  2J5V A;  2R8V A;  2J4L A;  1YBD A;  1GS5 A;  1OH9 A;  2A1F A;  2VA1 A;  3AAW A;  3C20 A;  3K4Y A;  3K56 A;  3ZZH A;  4AXS A;  3C1M A;  3WWN A;  3QUO A;  2W21 A;  3QVF A;  3QVH A;  2J0X A;  4OLC A;  2WE5 A;  2J5T A;  2BND A;  4JZ9 A;  2JJX A;  2BTY A;  4Q1T A;  4NDQ A;  3S6H A;  4AB7 A;  3LKK A;  3D2M A;  2BNE A;  4NDP A;  2JJ4 A;  3ZZI A;  2CDQ A;  2BNF A;  3EK5 A;  3K4O A;  4NDQ B;  2AKO A;  3L76 A;  2R98 A;  4NDR A;  3NWY A;  3ZZF A;  2WE4 A;  3TVI A;  2BMU A;  3S6G A;  4A7W A;  3L86 A;  2HMF A;  4JZ7 A;  2E9Y A;  2J4K A;  3LL9 A;  2V4Y A;  4USJ A;  3QUN A;  2BUF A;  4NDR B;  2X2W A;  4F6T A;  4KZT A;  3WWM A;  4I49 A;  1OHA A;  1E19 A; 
#chains in the Genus database with same CATH topology
 4F6T B;  4NDP B;  2WXB A;  2J0W A;  3B8G A;  3S6K A;  2AP9 A;  1OHB A;  3D41 A;  2JI5 A;  3AB4 A;  4NDO A;  3EK6 A;  3ZZG A;  2OGX A;  2J4J A;  1B7B A;  3T7B A;  3K52 A;  3C1N A;  2V5H A;  1GSJ A;  3LL5 A;  4A7X A;  1Z9D A;  3D40 A;  2BRX A;  3U6U A;  2RD5 A;  4JZ8 A;  2BRI A;  4NDO B;  3AB2 A;  2OGX B;  2IJ9 A;  3QUR A;  3KZF A;  3D2P A;  2J5V A;  2R8V A;  2J4L A;  1YBD A;  1GS5 A;  1OH9 A;  2A1F A;  2VA1 A;  3AAW A;  3C20 A;  3K4Y A;  3K56 A;  3ZZH A;  4AXS A;  3C1M A;  3WWN A;  3QUO A;  2W21 A;  3QVF A;  3QVH A;  2J0X A;  4OLC A;  2WE5 A;  2J5T A;  2BND A;  4JZ9 A;  2JJX A;  2BTY A;  4Q1T A;  4NDQ A;  3S6H A;  4AB7 A;  3LKK A;  3D2M A;  2BNE A;  4NDP A;  2JJ4 A;  3ZZI A;  2CDQ A;  2BNF A;  3EK5 A;  3K4O A;  4NDQ B;  2AKO A;  3L76 A;  2R98 A;  4NDR A;  3NWY A;  3ZZF A;  2WE4 A;  3TVI A;  2BMU A;  3S6G A;  4A7W A;  3L86 A;  2HMF A;  4JZ7 A;  2E9Y A;  2J4K A;  3LL9 A;  2V4Y A;  4USJ A;  3QUN A;  2BUF A;  4NDR B;  2X2W A;  4F6T A;  4KZT A;  3WWM A;  4I49 A;  1OHA A;  1E19 A; 
#chains in the Genus database with same CATH homology
 4F6T B;  4NDP B;  2WXB A;  2J0W A;  3B8G A;  3S6K A;  2AP9 A;  1OHB A;  3D41 A;  2JI5 A;  3AB4 A;  4NDO A;  3EK6 A;  3ZZG A;  2OGX A;  2J4J A;  1B7B A;  3T7B A;  3K52 A;  3C1N A;  2V5H A;  1GSJ A;  3LL5 A;  4A7X A;  1Z9D A;  3D40 A;  2BRX A;  3U6U A;  2RD5 A;  4JZ8 A;  2BRI A;  4NDO B;  3AB2 A;  2OGX B;  2IJ9 A;  3QUR A;  3KZF A;  3D2P A;  2J5V A;  2R8V A;  2J4L A;  1YBD A;  1GS5 A;  1OH9 A;  2A1F A;  2VA1 A;  3AAW A;  3C20 A;  3K4Y A;  3K56 A;  3ZZH A;  4AXS A;  3C1M A;  3WWN A;  3QUO A;  2W21 A;  3QVF A;  3QVH A;  2J0X A;  4OLC A;  2WE5 A;  2J5T A;  2BND A;  4JZ9 A;  2JJX A;  2BTY A;  4Q1T A;  4NDQ A;  3S6H A;  4AB7 A;  3LKK A;  3D2M A;  2BNE A;  4NDP A;  2JJ4 A;  3ZZI A;  2CDQ A;  2BNF A;  3EK5 A;  3K4O A;  4NDQ B;  2AKO A;  3L76 A;  2R98 A;  4NDR A;  3NWY A;  3ZZF A;  2WE4 A;  3TVI A;  2BMU A;  3S6G A;  4A7W A;  3L86 A;  2HMF A;  4JZ7 A;  2E9Y A;  2J4K A;  3LL9 A;  2V4Y A;  4USJ A;  3QUN A;  2BUF A;  4NDR B;  2X2W A;  4F6T A;  4KZT A;  3WWM A;  4I49 A;  1OHA A;  1E19 A; 
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similar chains in the Genus database (?% sequence similarity)
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