3WWMA

Crystal structure of lysz from thermus thermophilus with adp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
269
structure length
269
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative acetylglutamate kinase-like protein
publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
molecule tags Transferase
total genus 88
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwmA00
3LL9A 3D2PA 1E19A 3AAWA 3ZZHA 2JJXA 2X2WA 3K4OA 3K52A 4F6TA 2R98A 3QUNA 4AXSA 3ZZFA 2WXBA 4NDPB 3TVIA 2AKOA 2J4LA 2JI5A 2J4KA 2JJ4A 2A1FA 2CDQA 2BTYA 2W21A 4NDOB 3S6KA 2HMFA 2E9YA 4JZ9A 4AB7A 4Q1TA 3AB4A 1YBDA 2OGXB 3L76A 2V5HA 2J5TA 3QVFA 3ZZIA 4OLCA 2BRXA 3QUOA 3K4YA 4NDQB 2VA1A 3NWYA 2BNDA 2IJ9A 2J4JA 3D2MA 4I49A 4NDRA 3AB2A 3K56A 2RD5A 4F6TB 1GSJA 3S6HA 3T7BA 3WWMA 4USJA 2BMUA 2BNEA 3EK6A 2WE5A 3KZFA 4NDOA 1B7BA 3LL5A 2BNFA 2V4YA 3ZZGA 3S6GA 3U6UA 3C1MA 4KZTA 3WWNA 3LKKA 4NDRB 4JZ8A 3B8GA 2WE4A 2BUFA 1GS5A 2AP9A 1OH9A 2BRIA 3C20A 4NDPA 3L86A 3QVHA 1OHAA 4A7WA 3C1NA 3D40A 3EK5A 3QURA 2J5VA 3D41A 1OHBA 2R8VA 1Z9DA 2OGXA 4A7XA 4JZ7A 2J0XA 2J0WA 4NDQA
chains in the Genus database with same CATH superfamily
3LL9A 3D2PA 1E19A 3AAWA 3ZZHA 2JJXA 2X2WA 3K4OA 3K52A 4F6TA 2R98A 3QUNA 4AXSA 3ZZFA 2WXBA 4NDPB 3TVIA 2AKOA 2J4LA 2JI5A 2J4KA 2JJ4A 2A1FA 2CDQA 2BTYA 2W21A 4NDOB 3S6KA 2HMFA 2E9YA 4JZ9A 4AB7A 4Q1TA 3AB4A 1YBDA 2OGXB 3L76A 2V5HA 2J5TA 3QVFA 3ZZIA 4OLCA 2BRXA 3QUOA 3K4YA 4NDQB 2VA1A 3NWYA 2BNDA 2IJ9A 2J4JA 3D2MA 4I49A 4NDRA 3AB2A 3K56A 2RD5A 4F6TB 1GSJA 3S6HA 3T7BA 3WWMA 4USJA 2BMUA 2BNEA 3EK6A 2WE5A 3KZFA 4NDOA 1B7BA 3LL5A 2BNFA 2V4YA 3ZZGA 3S6GA 3U6UA 3C1MA 4KZTA 3WWNA 3LKKA 4NDRB 4JZ8A 3B8GA 2WE4A 2BUFA 1GS5A 2AP9A 1OH9A 2BRIA 3C20A 4NDPA 3L86A 3QVHA 1OHAA 4A7WA 3C1NA 3D40A 3EK5A 3QURA 2J5VA 3D41A 1OHBA 2R8VA 1Z9DA 2OGXA 4A7XA 4JZ7A 2J0XA 2J0WA 4NDQA
chains in the Genus database with same CATH topology
3LL9A 3D2PA 1E19A 3AAWA 3ZZHA 2JJXA 2X2WA 3K4OA 3K52A 4F6TA 2R98A 3QUNA 4AXSA 3ZZFA 2WXBA 4NDPB 3TVIA 2AKOA 2J4LA 2JI5A 2J4KA 2JJ4A 2A1FA 2CDQA 2BTYA 2W21A 4NDOB 3S6KA 2HMFA 2E9YA 4JZ9A 4AB7A 4Q1TA 3AB4A 1YBDA 2OGXB 3L76A 2V5HA 2J5TA 3QVFA 3ZZIA 4OLCA 2BRXA 3QUOA 3K4YA 4NDQB 2VA1A 3NWYA 2BNDA 2IJ9A 2J4JA 3D2MA 4I49A 4NDRA 3AB2A 3K56A 2RD5A 4F6TB 1GSJA 3S6HA 3T7BA 3WWMA 4USJA 2BMUA 2BNEA 3EK6A 2WE5A 3KZFA 4NDOA 1B7BA 3LL5A 2BNFA 2V4YA 3ZZGA 3S6GA 3U6UA 3C1MA 4KZTA 3WWNA 3LKKA 4NDRB 4JZ8A 3B8GA 2WE4A 2BUFA 1GS5A 2AP9A 1OH9A 2BRIA 3C20A 4NDPA 3L86A 3QVHA 1OHAA 4A7WA 3C1NA 3D40A 3EK5A 3QURA 2J5VA 3D41A 1OHBA 2R8VA 1Z9DA 2OGXA 4A7XA 4JZ7A 2J0XA 2J0WA 4NDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL9 A;  3D2P A;  1E19 A;  3AAW A;  3ZZH A;  2JJX A;  2X2W A;  3K4O A;  3K52 A;  4F6T A;  2R98 A;  3QUN A;  4AXS A;  3ZZF A;  2WXB A;  4NDP B;  3TVI A;  2AKO A;  2J4L A;  2JI5 A;  2J4K A;  2JJ4 A;  2A1F A;  2CDQ A;  2BTY A;  2W21 A;  4NDO B;  3S6K A;  2HMF A;  2E9Y A;  4JZ9 A;  4AB7 A;  4Q1T A;  3AB4 A;  1YBD A;  2OGX B;  3L76 A;  2V5H A;  2J5T A;  3QVF A;  3ZZI A;  4OLC A;  2BRX A;  3QUO A;  3K4Y A;  4NDQ B;  2VA1 A;  3NWY A;  2BND A;  2IJ9 A;  2J4J A;  3D2M A;  4I49 A;  4NDR A;  3AB2 A;  3K56 A;  2RD5 A;  4F6T B;  1GSJ A;  3S6H A;  3T7B A;  3WWM A;  4USJ A;  2BMU A;  2BNE A;  3EK6 A;  2WE5 A;  3KZF A;  4NDO A;  1B7B A;  3LL5 A;  2BNF A;  2V4Y A;  3ZZG A;  3S6G A;  3U6U A;  3C1M A;  4KZT A;  3WWN A;  3LKK A;  4NDR B;  4JZ8 A;  3B8G A;  2WE4 A;  2BUF A;  1GS5 A;  2AP9 A;  1OH9 A;  2BRI A;  3C20 A;  4NDP A;  3L86 A;  3QVH A;  1OHA A;  4A7W A;  3C1N A;  3D40 A;  3EK5 A;  3QUR A;  2J5V A;  3D41 A;  1OHB A;  2R8V A;  1Z9D A;  2OGX A;  4A7X A;  4JZ7 A;  2J0X A;  2J0W A;  4NDQ A; 
#chains in the Genus database with same CATH topology
 3LL9 A;  3D2P A;  1E19 A;  3AAW A;  3ZZH A;  2JJX A;  2X2W A;  3K4O A;  3K52 A;  4F6T A;  2R98 A;  3QUN A;  4AXS A;  3ZZF A;  2WXB A;  4NDP B;  3TVI A;  2AKO A;  2J4L A;  2JI5 A;  2J4K A;  2JJ4 A;  2A1F A;  2CDQ A;  2BTY A;  2W21 A;  4NDO B;  3S6K A;  2HMF A;  2E9Y A;  4JZ9 A;  4AB7 A;  4Q1T A;  3AB4 A;  1YBD A;  2OGX B;  3L76 A;  2V5H A;  2J5T A;  3QVF A;  3ZZI A;  4OLC A;  2BRX A;  3QUO A;  3K4Y A;  4NDQ B;  2VA1 A;  3NWY A;  2BND A;  2IJ9 A;  2J4J A;  3D2M A;  4I49 A;  4NDR A;  3AB2 A;  3K56 A;  2RD5 A;  4F6T B;  1GSJ A;  3S6H A;  3T7B A;  3WWM A;  4USJ A;  2BMU A;  2BNE A;  3EK6 A;  2WE5 A;  3KZF A;  4NDO A;  1B7B A;  3LL5 A;  2BNF A;  2V4Y A;  3ZZG A;  3S6G A;  3U6U A;  3C1M A;  4KZT A;  3WWN A;  3LKK A;  4NDR B;  4JZ8 A;  3B8G A;  2WE4 A;  2BUF A;  1GS5 A;  2AP9 A;  1OH9 A;  2BRI A;  3C20 A;  4NDP A;  3L86 A;  3QVH A;  1OHA A;  4A7W A;  3C1N A;  3D40 A;  3EK5 A;  3QUR A;  2J5V A;  3D41 A;  1OHB A;  2R8V A;  1Z9D A;  2OGX A;  4A7X A;  4JZ7 A;  2J0X A;  2J0W A;  4NDQ A; 
#chains in the Genus database with same CATH homology
 3LL9 A;  3D2P A;  1E19 A;  3AAW A;  3ZZH A;  2JJX A;  2X2W A;  3K4O A;  3K52 A;  4F6T A;  2R98 A;  3QUN A;  4AXS A;  3ZZF A;  2WXB A;  4NDP B;  3TVI A;  2AKO A;  2J4L A;  2JI5 A;  2J4K A;  2JJ4 A;  2A1F A;  2CDQ A;  2BTY A;  2W21 A;  4NDO B;  3S6K A;  2HMF A;  2E9Y A;  4JZ9 A;  4AB7 A;  4Q1T A;  3AB4 A;  1YBD A;  2OGX B;  3L76 A;  2V5H A;  2J5T A;  3QVF A;  3ZZI A;  4OLC A;  2BRX A;  3QUO A;  3K4Y A;  4NDQ B;  2VA1 A;  3NWY A;  2BND A;  2IJ9 A;  2J4J A;  3D2M A;  4I49 A;  4NDR A;  3AB2 A;  3K56 A;  2RD5 A;  4F6T B;  1GSJ A;  3S6H A;  3T7B A;  3WWM A;  4USJ A;  2BMU A;  2BNE A;  3EK6 A;  2WE5 A;  3KZF A;  4NDO A;  1B7B A;  3LL5 A;  2BNF A;  2V4Y A;  3ZZG A;  3S6G A;  3U6U A;  3C1M A;  4KZT A;  3WWN A;  3LKK A;  4NDR B;  4JZ8 A;  3B8G A;  2WE4 A;  2BUF A;  1GS5 A;  2AP9 A;  1OH9 A;  2BRI A;  3C20 A;  4NDP A;  3L86 A;  3QVH A;  1OHA A;  4A7W A;  3C1N A;  3D40 A;  3EK5 A;  3QUR A;  2J5V A;  3D41 A;  1OHB A;  2R8V A;  1Z9D A;  2OGX A;  4A7X A;  4JZ7 A;  2J0X A;  2J0W A;  4NDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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