3WWMA

Crystal structure of lysz from thermus thermophilus with adp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
269
structure length
269
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
molecule tags Transferase
molecule keywords Putative acetylglutamate kinase-like protein
total genus 88
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwmA00
2J4KA 4F6TA 4NDOA 3LKKA 2JJ4A 4KZTA 2J5VA 2J0WA 4NDOB 3ZZHA 4JZ9A 1B7BA 4JZ7A 2AP9A 2BNEA 2J0XA 2BMUA 3NWYA 2BNDA 3B8GA 4AB7A 2WE4A 2BUFA 3K56A 3EK6A 3QVFA 4USJA 3ZZGA 4F6TB 4NDPB 3K4OA 3U6UA 2J4LA 3K4YA 2V5HA 3QUNA 2BRXA 3TVIA 2OGXA 4NDRA 1E19A 4I49A 3KZFA 2OGXB 3LL9A 4NDRB 3C1MA 3K52A 2J4JA 3D40A 2JJXA 1GSJA 2WE5A 3S6KA 3EK5A 1YBDA 4NDPA 4AXSA 2HMFA 2IJ9A 4JZ8A 3ZZIA 3QUOA 2BRIA 2BNFA 2A1FA 3WWMA 4A7XA 2X2WA 2WXBA 3AAWA 3C20A 3S6HA 2E9YA 3QVHA 3S6GA 1OHAA 3L76A 3LL5A 4NDQA 2BTYA 3C1NA 3AB2A 1OH9A 2JI5A 4A7WA 3ZZFA 2V4YA 3QURA 3T7BA 2W21A 2R8VA 2VA1A 1Z9DA 3AB4A 2J5TA 2CDQA 4NDQB 4Q1TA 3D2PA 2RD5A 2R98A 1GS5A 3D2MA 3WWNA 4OLCA 2AKOA 3L86A 3D41A 1OHBA
chains in the Genus database with same CATH superfamily
2J4KA 4F6TA 4NDOA 3LKKA 2JJ4A 4KZTA 2J5VA 2J0WA 4NDOB 3ZZHA 4JZ9A 1B7BA 4JZ7A 2AP9A 2BNEA 2J0XA 2BMUA 3NWYA 2BNDA 3B8GA 4AB7A 2WE4A 2BUFA 3K56A 3EK6A 3QVFA 4USJA 3ZZGA 4F6TB 4NDPB 3K4OA 3U6UA 2J4LA 3K4YA 2V5HA 3QUNA 2BRXA 3TVIA 2OGXA 4NDRA 1E19A 4I49A 3KZFA 2OGXB 3LL9A 4NDRB 3C1MA 3K52A 2J4JA 3D40A 2JJXA 1GSJA 2WE5A 3S6KA 3EK5A 1YBDA 4NDPA 4AXSA 2HMFA 2IJ9A 4JZ8A 3ZZIA 3QUOA 2BRIA 2BNFA 2A1FA 3WWMA 4A7XA 2X2WA 2WXBA 3AAWA 3C20A 3S6HA 2E9YA 3QVHA 3S6GA 1OHAA 3L76A 3LL5A 4NDQA 2BTYA 3C1NA 3AB2A 1OH9A 2JI5A 4A7WA 3ZZFA 2V4YA 3QURA 3T7BA 2W21A 2R8VA 2VA1A 1Z9DA 3AB4A 2J5TA 2CDQA 4NDQB 4Q1TA 3D2PA 2RD5A 2R98A 1GS5A 3D2MA 3WWNA 4OLCA 2AKOA 3L86A 3D41A 1OHBA
chains in the Genus database with same CATH topology
2J4KA 4F6TA 4NDOA 3LKKA 2JJ4A 4KZTA 2J5VA 2J0WA 4NDOB 3ZZHA 4JZ9A 1B7BA 4JZ7A 2AP9A 2BNEA 2J0XA 2BMUA 3NWYA 2BNDA 3B8GA 4AB7A 2WE4A 2BUFA 3K56A 3EK6A 3QVFA 4USJA 3ZZGA 4F6TB 4NDPB 3K4OA 3U6UA 2J4LA 3K4YA 2V5HA 3QUNA 2BRXA 3TVIA 2OGXA 4NDRA 1E19A 4I49A 3KZFA 2OGXB 3LL9A 4NDRB 3C1MA 3K52A 2J4JA 3D40A 2JJXA 1GSJA 2WE5A 3S6KA 3EK5A 1YBDA 4NDPA 4AXSA 2HMFA 2IJ9A 4JZ8A 3ZZIA 3QUOA 2BRIA 2BNFA 2A1FA 3WWMA 4A7XA 2X2WA 2WXBA 3AAWA 3C20A 3S6HA 2E9YA 3QVHA 3S6GA 1OHAA 3L76A 3LL5A 4NDQA 2BTYA 3C1NA 3AB2A 1OH9A 2JI5A 4A7WA 3ZZFA 2V4YA 3QURA 3T7BA 2W21A 2R8VA 2VA1A 1Z9DA 3AB4A 2J5TA 2CDQA 4NDQB 4Q1TA 3D2PA 2RD5A 2R98A 1GS5A 3D2MA 3WWNA 4OLCA 2AKOA 3L86A 3D41A 1OHBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J4K A;  4F6T A;  4NDO A;  3LKK A;  2JJ4 A;  4KZT A;  2J5V A;  2J0W A;  4NDO B;  3ZZH A;  4JZ9 A;  1B7B A;  4JZ7 A;  2AP9 A;  2BNE A;  2J0X A;  2BMU A;  3NWY A;  2BND A;  3B8G A;  4AB7 A;  2WE4 A;  2BUF A;  3K56 A;  3EK6 A;  3QVF A;  4USJ A;  3ZZG A;  4F6T B;  4NDP B;  3K4O A;  3U6U A;  2J4L A;  3K4Y A;  2V5H A;  3QUN A;  2BRX A;  3TVI A;  2OGX A;  4NDR A;  1E19 A;  4I49 A;  3KZF A;  2OGX B;  3LL9 A;  4NDR B;  3C1M A;  3K52 A;  2J4J A;  3D40 A;  2JJX A;  1GSJ A;  2WE5 A;  3S6K A;  3EK5 A;  1YBD A;  4NDP A;  4AXS A;  2HMF A;  2IJ9 A;  4JZ8 A;  3ZZI A;  3QUO A;  2BRI A;  2BNF A;  2A1F A;  3WWM A;  4A7X A;  2X2W A;  2WXB A;  3AAW A;  3C20 A;  3S6H A;  2E9Y A;  3QVH A;  3S6G A;  1OHA A;  3L76 A;  3LL5 A;  4NDQ A;  2BTY A;  3C1N A;  3AB2 A;  1OH9 A;  2JI5 A;  4A7W A;  3ZZF A;  2V4Y A;  3QUR A;  3T7B A;  2W21 A;  2R8V A;  2VA1 A;  1Z9D A;  3AB4 A;  2J5T A;  2CDQ A;  4NDQ B;  4Q1T A;  3D2P A;  2RD5 A;  2R98 A;  1GS5 A;  3D2M A;  3WWN A;  4OLC A;  2AKO A;  3L86 A;  3D41 A;  1OHB A; 
#chains in the Genus database with same CATH topology
 2J4K A;  4F6T A;  4NDO A;  3LKK A;  2JJ4 A;  4KZT A;  2J5V A;  2J0W A;  4NDO B;  3ZZH A;  4JZ9 A;  1B7B A;  4JZ7 A;  2AP9 A;  2BNE A;  2J0X A;  2BMU A;  3NWY A;  2BND A;  3B8G A;  4AB7 A;  2WE4 A;  2BUF A;  3K56 A;  3EK6 A;  3QVF A;  4USJ A;  3ZZG A;  4F6T B;  4NDP B;  3K4O A;  3U6U A;  2J4L A;  3K4Y A;  2V5H A;  3QUN A;  2BRX A;  3TVI A;  2OGX A;  4NDR A;  1E19 A;  4I49 A;  3KZF A;  2OGX B;  3LL9 A;  4NDR B;  3C1M A;  3K52 A;  2J4J A;  3D40 A;  2JJX A;  1GSJ A;  2WE5 A;  3S6K A;  3EK5 A;  1YBD A;  4NDP A;  4AXS A;  2HMF A;  2IJ9 A;  4JZ8 A;  3ZZI A;  3QUO A;  2BRI A;  2BNF A;  2A1F A;  3WWM A;  4A7X A;  2X2W A;  2WXB A;  3AAW A;  3C20 A;  3S6H A;  2E9Y A;  3QVH A;  3S6G A;  1OHA A;  3L76 A;  3LL5 A;  4NDQ A;  2BTY A;  3C1N A;  3AB2 A;  1OH9 A;  2JI5 A;  4A7W A;  3ZZF A;  2V4Y A;  3QUR A;  3T7B A;  2W21 A;  2R8V A;  2VA1 A;  1Z9D A;  3AB4 A;  2J5T A;  2CDQ A;  4NDQ B;  4Q1T A;  3D2P A;  2RD5 A;  2R98 A;  1GS5 A;  3D2M A;  3WWN A;  4OLC A;  2AKO A;  3L86 A;  3D41 A;  1OHB A; 
#chains in the Genus database with same CATH homology
 2J4K A;  4F6T A;  4NDO A;  3LKK A;  2JJ4 A;  4KZT A;  2J5V A;  2J0W A;  4NDO B;  3ZZH A;  4JZ9 A;  1B7B A;  4JZ7 A;  2AP9 A;  2BNE A;  2J0X A;  2BMU A;  3NWY A;  2BND A;  3B8G A;  4AB7 A;  2WE4 A;  2BUF A;  3K56 A;  3EK6 A;  3QVF A;  4USJ A;  3ZZG A;  4F6T B;  4NDP B;  3K4O A;  3U6U A;  2J4L A;  3K4Y A;  2V5H A;  3QUN A;  2BRX A;  3TVI A;  2OGX A;  4NDR A;  1E19 A;  4I49 A;  3KZF A;  2OGX B;  3LL9 A;  4NDR B;  3C1M A;  3K52 A;  2J4J A;  3D40 A;  2JJX A;  1GSJ A;  2WE5 A;  3S6K A;  3EK5 A;  1YBD A;  4NDP A;  4AXS A;  2HMF A;  2IJ9 A;  4JZ8 A;  3ZZI A;  3QUO A;  2BRI A;  2BNF A;  2A1F A;  3WWM A;  4A7X A;  2X2W A;  2WXB A;  3AAW A;  3C20 A;  3S6H A;  2E9Y A;  3QVH A;  3S6G A;  1OHA A;  3L76 A;  3LL5 A;  4NDQ A;  2BTY A;  3C1N A;  3AB2 A;  1OH9 A;  2JI5 A;  4A7W A;  3ZZF A;  2V4Y A;  3QUR A;  3T7B A;  2W21 A;  2R8V A;  2VA1 A;  1Z9D A;  3AB4 A;  2J5T A;  2CDQ A;  4NDQ B;  4Q1T A;  3D2P A;  2RD5 A;  2R98 A;  1GS5 A;  3D2M A;  3WWN A;  4OLC A;  2AKO A;  3L86 A;  3D41 A;  1OHB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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