3WWMA

Crystal structure of lysz from thermus thermophilus with adp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
269
structure length
269
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Putative acetylglutamate kinase-like protein
publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
total genus 88
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwmA00
3D2MA 4OLCA 4NDRA 2BTYA 2R98A 1OHAA 3D2PA 3T7BA 4KZTA 2OGXA 2BNEA 2OGXB 3C20A 3C1NA 3QVHA 4NDOB 2E9YA 2BRXA 4AXSA 3NWYA 4A7XA 2J4LA 3EK6A 2WE4A 3B8GA 2WXBA 2AKOA 1Z9DA 3ZZGA 4F6TA 2X2WA 3QURA 4NDRB 3ZZHA 3AB4A 2J0XA 2IJ9A 4I49A 2J0WA 4USJA 3L86A 1GS5A 2RD5A 2BNDA 1B7BA 3S6GA 4JZ8A 2BRIA 2J5VA 3K52A 3KZFA 3L76A 2CDQA 4JZ7A 2WE5A 1OHBA 2JJ4A 3ZZIA 3TVIA 3LL9A 1OH9A 2HMFA 2J4KA 2JJXA 4Q1TA 4F6TB 4AB7A 2BUFA 2W21A 3EK5A 2JI5A 4A7WA 3QUOA 4NDPA 3LKKA 3AAWA 3AB2A 2AP9A 3D41A 3S6HA 3K4YA 2R8VA 3QVFA 1E19A 3LL5A 2VA1A 3K56A 3U6UA 1GSJA 3C1MA 4NDOA 2BNFA 4NDQA 2V5HA 3WWNA 2V4YA 2J5TA 4NDQB 3K4OA 3ZZFA 3QUNA 2A1FA 4JZ9A 2J4JA 3D40A 3WWMA 2BMUA 1YBDA 4NDPB 3S6KA
chains in the Genus database with same CATH superfamily
3D2MA 4OLCA 4NDRA 2BTYA 2R98A 1OHAA 3D2PA 3T7BA 4KZTA 2OGXA 2BNEA 2OGXB 3C20A 3C1NA 3QVHA 4NDOB 2E9YA 2BRXA 4AXSA 3NWYA 4A7XA 2J4LA 3EK6A 2WE4A 3B8GA 2WXBA 2AKOA 1Z9DA 3ZZGA 4F6TA 2X2WA 3QURA 4NDRB 3ZZHA 3AB4A 2J0XA 2IJ9A 4I49A 2J0WA 4USJA 3L86A 1GS5A 2RD5A 2BNDA 1B7BA 3S6GA 4JZ8A 2BRIA 2J5VA 3K52A 3KZFA 3L76A 2CDQA 4JZ7A 2WE5A 1OHBA 2JJ4A 3ZZIA 3TVIA 3LL9A 1OH9A 2HMFA 2J4KA 2JJXA 4Q1TA 4F6TB 4AB7A 2BUFA 2W21A 3EK5A 2JI5A 4A7WA 3QUOA 4NDPA 3LKKA 3AAWA 3AB2A 2AP9A 3D41A 3S6HA 3K4YA 2R8VA 3QVFA 1E19A 3LL5A 2VA1A 3K56A 3U6UA 1GSJA 3C1MA 4NDOA 2BNFA 4NDQA 2V5HA 3WWNA 2V4YA 2J5TA 4NDQB 3K4OA 3ZZFA 3QUNA 2A1FA 4JZ9A 2J4JA 3D40A 3WWMA 2BMUA 1YBDA 4NDPB 3S6KA
chains in the Genus database with same CATH topology
3D2MA 4OLCA 4NDRA 2BTYA 2R98A 1OHAA 3D2PA 3T7BA 4KZTA 2OGXA 2BNEA 2OGXB 3C20A 3C1NA 3QVHA 4NDOB 2E9YA 2BRXA 4AXSA 3NWYA 4A7XA 2J4LA 3EK6A 2WE4A 3B8GA 2WXBA 2AKOA 1Z9DA 3ZZGA 4F6TA 2X2WA 3QURA 4NDRB 3ZZHA 3AB4A 2J0XA 2IJ9A 4I49A 2J0WA 4USJA 3L86A 1GS5A 2RD5A 2BNDA 1B7BA 3S6GA 4JZ8A 2BRIA 2J5VA 3K52A 3KZFA 3L76A 2CDQA 4JZ7A 2WE5A 1OHBA 2JJ4A 3ZZIA 3TVIA 3LL9A 1OH9A 2HMFA 2J4KA 2JJXA 4Q1TA 4F6TB 4AB7A 2BUFA 2W21A 3EK5A 2JI5A 4A7WA 3QUOA 4NDPA 3LKKA 3AAWA 3AB2A 2AP9A 3D41A 3S6HA 3K4YA 2R8VA 3QVFA 1E19A 3LL5A 2VA1A 3K56A 3U6UA 1GSJA 3C1MA 4NDOA 2BNFA 4NDQA 2V5HA 3WWNA 2V4YA 2J5TA 4NDQB 3K4OA 3ZZFA 3QUNA 2A1FA 4JZ9A 2J4JA 3D40A 3WWMA 2BMUA 1YBDA 4NDPB 3S6KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2M A;  4OLC A;  4NDR A;  2BTY A;  2R98 A;  1OHA A;  3D2P A;  3T7B A;  4KZT A;  2OGX A;  2BNE A;  2OGX B;  3C20 A;  3C1N A;  3QVH A;  4NDO B;  2E9Y A;  2BRX A;  4AXS A;  3NWY A;  4A7X A;  2J4L A;  3EK6 A;  2WE4 A;  3B8G A;  2WXB A;  2AKO A;  1Z9D A;  3ZZG A;  4F6T A;  2X2W A;  3QUR A;  4NDR B;  3ZZH A;  3AB4 A;  2J0X A;  2IJ9 A;  4I49 A;  2J0W A;  4USJ A;  3L86 A;  1GS5 A;  2RD5 A;  2BND A;  1B7B A;  3S6G A;  4JZ8 A;  2BRI A;  2J5V A;  3K52 A;  3KZF A;  3L76 A;  2CDQ A;  4JZ7 A;  2WE5 A;  1OHB A;  2JJ4 A;  3ZZI A;  3TVI A;  3LL9 A;  1OH9 A;  2HMF A;  2J4K A;  2JJX A;  4Q1T A;  4F6T B;  4AB7 A;  2BUF A;  2W21 A;  3EK5 A;  2JI5 A;  4A7W A;  3QUO A;  4NDP A;  3LKK A;  3AAW A;  3AB2 A;  2AP9 A;  3D41 A;  3S6H A;  3K4Y A;  2R8V A;  3QVF A;  1E19 A;  3LL5 A;  2VA1 A;  3K56 A;  3U6U A;  1GSJ A;  3C1M A;  4NDO A;  2BNF A;  4NDQ A;  2V5H A;  3WWN A;  2V4Y A;  2J5T A;  4NDQ B;  3K4O A;  3ZZF A;  3QUN A;  2A1F A;  4JZ9 A;  2J4J A;  3D40 A;  3WWM A;  2BMU A;  1YBD A;  4NDP B;  3S6K A; 
#chains in the Genus database with same CATH topology
 3D2M A;  4OLC A;  4NDR A;  2BTY A;  2R98 A;  1OHA A;  3D2P A;  3T7B A;  4KZT A;  2OGX A;  2BNE A;  2OGX B;  3C20 A;  3C1N A;  3QVH A;  4NDO B;  2E9Y A;  2BRX A;  4AXS A;  3NWY A;  4A7X A;  2J4L A;  3EK6 A;  2WE4 A;  3B8G A;  2WXB A;  2AKO A;  1Z9D A;  3ZZG A;  4F6T A;  2X2W A;  3QUR A;  4NDR B;  3ZZH A;  3AB4 A;  2J0X A;  2IJ9 A;  4I49 A;  2J0W A;  4USJ A;  3L86 A;  1GS5 A;  2RD5 A;  2BND A;  1B7B A;  3S6G A;  4JZ8 A;  2BRI A;  2J5V A;  3K52 A;  3KZF A;  3L76 A;  2CDQ A;  4JZ7 A;  2WE5 A;  1OHB A;  2JJ4 A;  3ZZI A;  3TVI A;  3LL9 A;  1OH9 A;  2HMF A;  2J4K A;  2JJX A;  4Q1T A;  4F6T B;  4AB7 A;  2BUF A;  2W21 A;  3EK5 A;  2JI5 A;  4A7W A;  3QUO A;  4NDP A;  3LKK A;  3AAW A;  3AB2 A;  2AP9 A;  3D41 A;  3S6H A;  3K4Y A;  2R8V A;  3QVF A;  1E19 A;  3LL5 A;  2VA1 A;  3K56 A;  3U6U A;  1GSJ A;  3C1M A;  4NDO A;  2BNF A;  4NDQ A;  2V5H A;  3WWN A;  2V4Y A;  2J5T A;  4NDQ B;  3K4O A;  3ZZF A;  3QUN A;  2A1F A;  4JZ9 A;  2J4J A;  3D40 A;  3WWM A;  2BMU A;  1YBD A;  4NDP B;  3S6K A; 
#chains in the Genus database with same CATH homology
 3D2M A;  4OLC A;  4NDR A;  2BTY A;  2R98 A;  1OHA A;  3D2P A;  3T7B A;  4KZT A;  2OGX A;  2BNE A;  2OGX B;  3C20 A;  3C1N A;  3QVH A;  4NDO B;  2E9Y A;  2BRX A;  4AXS A;  3NWY A;  4A7X A;  2J4L A;  3EK6 A;  2WE4 A;  3B8G A;  2WXB A;  2AKO A;  1Z9D A;  3ZZG A;  4F6T A;  2X2W A;  3QUR A;  4NDR B;  3ZZH A;  3AB4 A;  2J0X A;  2IJ9 A;  4I49 A;  2J0W A;  4USJ A;  3L86 A;  1GS5 A;  2RD5 A;  2BND A;  1B7B A;  3S6G A;  4JZ8 A;  2BRI A;  2J5V A;  3K52 A;  3KZF A;  3L76 A;  2CDQ A;  4JZ7 A;  2WE5 A;  1OHB A;  2JJ4 A;  3ZZI A;  3TVI A;  3LL9 A;  1OH9 A;  2HMF A;  2J4K A;  2JJX A;  4Q1T A;  4F6T B;  4AB7 A;  2BUF A;  2W21 A;  3EK5 A;  2JI5 A;  4A7W A;  3QUO A;  4NDP A;  3LKK A;  3AAW A;  3AB2 A;  2AP9 A;  3D41 A;  3S6H A;  3K4Y A;  2R8V A;  3QVF A;  1E19 A;  3LL5 A;  2VA1 A;  3K56 A;  3U6U A;  1GSJ A;  3C1M A;  4NDO A;  2BNF A;  4NDQ A;  2V5H A;  3WWN A;  2V4Y A;  2J5T A;  4NDQ B;  3K4O A;  3ZZF A;  3QUN A;  2A1F A;  4JZ9 A;  2J4J A;  3D40 A;  3WWM A;  2BMU A;  1YBD A;  4NDP B;  3S6K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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