3L76A

Crystal structure of aspartate kinase from synechocystis
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
599
structure length
585
Chain Sequence
ALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEILEIRPDRLEHHLREGKVVVVAGFQGIHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSDEPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTLSPPKNQTDLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNLAGTKTVTVPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A new mode of dimerization of allosteric enzymes with ACT domains revealed by the crystal structure of the aspartate kinase from Cyanobacteria
pubmed doi rcsb
source organism Synechocystis
molecule tags Transferase
molecule keywords Aspartokinase
total genus 176
structure length 585
sequence length 599
chains with identical sequence B
ec nomenclature ec 2.7.2.4: Aspartate kinase.
pdb deposition date 2009-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01842 ACT ACT domain
A PF13840 ACT_7 ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3l76A01
3D2MA 1YBDA 4NDQA 4F6TA 3S6GA 2BNFA 3QUOA 2AP9A 1OHBA 3LKKA 3QURA 3AAWA 1GS5A 4NDOB 4OLCA 3ZZIA 3EK6A 3NWYA 4I49A 2X2WA 3LL5A 2J5TA 4NDQB 3QVHA 1OH9A 3S6KA 2A1FA 2OGXB 3TVIA 2OGXA 3L76A 4A7XA 3U6UA 3AB2A 3C1NA 1Z9DA 4NDRB 2J0WA 2V5HA 4NDRA 3K4OA 2E9YA 2J4LA 3KZFA 2HMFA 3LL9A 3C20A 4NDPA 4JZ7A 3EK5A 2BUFA 3AB4A 2J5VA 3C1MA 3QVFA 2JJXA 2WE5A 3ZZHA 3D40A 2WXBA 4Q1TA 1GSJA 3B8GA 3WWMA 2W21A 2J4JA 4AB7A 2BMUA 4USJA 1OHAA 2BRIA 2BRXA 2JI5A 3K52A 4NDPB 3T7BA 2CDQA 1B7BA 2R8VA 4A7WA 2J4KA 2V4YA 2BNDA 2BTYA 2JJ4A 2WE4A 2RD5A 3K56A 4JZ9A 3D41A 3L86A 4F6TB 1E19A 3S6HA 3ZZGA 3K4YA 4AXSA 4JZ8A 4NDOA 3WWNA 2J0XA 3D2PA 2AKOA 2R98A 4KZTA 3QUNA 2BNEA 2VA1A 2IJ9A 3ZZFA
chains in the Genus database with same CATH superfamily
3D2MA 1YBDA 4NDQA 4F6TA 3S6GA 2BNFA 3QUOA 2AP9A 1OHBA 3LKKA 3QURA 3AAWA 1GS5A 4NDOB 4OLCA 3ZZIA 3EK6A 3NWYA 4I49A 2X2WA 3LL5A 2J5TA 4NDQB 3QVHA 1OH9A 3S6KA 2A1FA 2OGXB 3TVIA 2OGXA 3L76A 4A7XA 3U6UA 3AB2A 3C1NA 1Z9DA 4NDRB 2J0WA 2V5HA 4NDRA 3K4OA 2E9YA 2J4LA 3KZFA 2HMFA 3LL9A 3C20A 4NDPA 4JZ7A 3EK5A 2BUFA 3AB4A 2J5VA 3C1MA 3QVFA 2JJXA 2WE5A 3ZZHA 3D40A 2WXBA 4Q1TA 1GSJA 3B8GA 3WWMA 2W21A 2J4JA 4AB7A 2BMUA 4USJA 1OHAA 2BRIA 2BRXA 2JI5A 3K52A 4NDPB 3T7BA 2CDQA 1B7BA 2R8VA 4A7WA 2J4KA 2V4YA 2BNDA 2BTYA 2JJ4A 2WE4A 2RD5A 3K56A 4JZ9A 3D41A 3L86A 4F6TB 1E19A 3S6HA 3ZZGA 3K4YA 4AXSA 4JZ8A 4NDOA 3WWNA 2J0XA 3D2PA 2AKOA 2R98A 4KZTA 3QUNA 2BNEA 2VA1A 2IJ9A 3ZZFA
chains in the Genus database with same CATH topology
3D2MA 1YBDA 4NDQA 4F6TA 3S6GA 2BNFA 3QUOA 2AP9A 1OHBA 3LKKA 3QURA 3AAWA 1GS5A 4NDOB 4OLCA 3ZZIA 3EK6A 3NWYA 4I49A 2X2WA 3LL5A 2J5TA 4NDQB 3QVHA 1OH9A 3S6KA 2A1FA 2OGXB 3TVIA 2OGXA 3L76A 4A7XA 3U6UA 3AB2A 3C1NA 1Z9DA 4NDRB 2J0WA 2V5HA 4NDRA 3K4OA 2E9YA 2J4LA 3KZFA 2HMFA 3LL9A 3C20A 4NDPA 4JZ7A 3EK5A 2BUFA 3AB4A 2J5VA 3C1MA 3QVFA 2JJXA 2WE5A 3ZZHA 3D40A 2WXBA 4Q1TA 1GSJA 3B8GA 3WWMA 2W21A 2J4JA 4AB7A 2BMUA 4USJA 1OHAA 2BRIA 2BRXA 2JI5A 3K52A 4NDPB 3T7BA 2CDQA 1B7BA 2R8VA 4A7WA 2J4KA 2V4YA 2BNDA 2BTYA 2JJ4A 2WE4A 2RD5A 3K56A 4JZ9A 3D41A 3L86A 4F6TB 1E19A 3S6HA 3ZZGA 3K4YA 4AXSA 4JZ8A 4NDOA 3WWNA 2J0XA 3D2PA 2AKOA 2R98A 4KZTA 3QUNA 2BNEA 2VA1A 2IJ9A 3ZZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2M A;  1YBD A;  4NDQ A;  4F6T A;  3S6G A;  2BNF A;  3QUO A;  2AP9 A;  1OHB A;  3LKK A;  3QUR A;  3AAW A;  1GS5 A;  4NDO B;  4OLC A;  3ZZI A;  3EK6 A;  3NWY A;  4I49 A;  2X2W A;  3LL5 A;  2J5T A;  4NDQ B;  3QVH A;  1OH9 A;  3S6K A;  2A1F A;  2OGX B;  3TVI A;  2OGX A;  3L76 A;  4A7X A;  3U6U A;  3AB2 A;  3C1N A;  1Z9D A;  4NDR B;  2J0W A;  2V5H A;  4NDR A;  3K4O A;  2E9Y A;  2J4L A;  3KZF A;  2HMF A;  3LL9 A;  3C20 A;  4NDP A;  4JZ7 A;  3EK5 A;  2BUF A;  3AB4 A;  2J5V A;  3C1M A;  3QVF A;  2JJX A;  2WE5 A;  3ZZH A;  3D40 A;  2WXB A;  4Q1T A;  1GSJ A;  3B8G A;  3WWM A;  2W21 A;  2J4J A;  4AB7 A;  2BMU A;  4USJ A;  1OHA A;  2BRI A;  2BRX A;  2JI5 A;  3K52 A;  4NDP B;  3T7B A;  2CDQ A;  1B7B A;  2R8V A;  4A7W A;  2J4K A;  2V4Y A;  2BND A;  2BTY A;  2JJ4 A;  2WE4 A;  2RD5 A;  3K56 A;  4JZ9 A;  3D41 A;  3L86 A;  4F6T B;  1E19 A;  3S6H A;  3ZZG A;  3K4Y A;  4AXS A;  4JZ8 A;  4NDO A;  3WWN A;  2J0X A;  3D2P A;  2AKO A;  2R98 A;  4KZT A;  3QUN A;  2BNE A;  2VA1 A;  2IJ9 A;  3ZZF A; 
#chains in the Genus database with same CATH topology
 3D2M A;  1YBD A;  4NDQ A;  4F6T A;  3S6G A;  2BNF A;  3QUO A;  2AP9 A;  1OHB A;  3LKK A;  3QUR A;  3AAW A;  1GS5 A;  4NDO B;  4OLC A;  3ZZI A;  3EK6 A;  3NWY A;  4I49 A;  2X2W A;  3LL5 A;  2J5T A;  4NDQ B;  3QVH A;  1OH9 A;  3S6K A;  2A1F A;  2OGX B;  3TVI A;  2OGX A;  3L76 A;  4A7X A;  3U6U A;  3AB2 A;  3C1N A;  1Z9D A;  4NDR B;  2J0W A;  2V5H A;  4NDR A;  3K4O A;  2E9Y A;  2J4L A;  3KZF A;  2HMF A;  3LL9 A;  3C20 A;  4NDP A;  4JZ7 A;  3EK5 A;  2BUF A;  3AB4 A;  2J5V A;  3C1M A;  3QVF A;  2JJX A;  2WE5 A;  3ZZH A;  3D40 A;  2WXB A;  4Q1T A;  1GSJ A;  3B8G A;  3WWM A;  2W21 A;  2J4J A;  4AB7 A;  2BMU A;  4USJ A;  1OHA A;  2BRI A;  2BRX A;  2JI5 A;  3K52 A;  4NDP B;  3T7B A;  2CDQ A;  1B7B A;  2R8V A;  4A7W A;  2J4K A;  2V4Y A;  2BND A;  2BTY A;  2JJ4 A;  2WE4 A;  2RD5 A;  3K56 A;  4JZ9 A;  3D41 A;  3L86 A;  4F6T B;  1E19 A;  3S6H A;  3ZZG A;  3K4Y A;  4AXS A;  4JZ8 A;  4NDO A;  3WWN A;  2J0X A;  3D2P A;  2AKO A;  2R98 A;  4KZT A;  3QUN A;  2BNE A;  2VA1 A;  2IJ9 A;  3ZZF A; 
#chains in the Genus database with same CATH homology
 3D2M A;  1YBD A;  4NDQ A;  4F6T A;  3S6G A;  2BNF A;  3QUO A;  2AP9 A;  1OHB A;  3LKK A;  3QUR A;  3AAW A;  1GS5 A;  4NDO B;  4OLC A;  3ZZI A;  3EK6 A;  3NWY A;  4I49 A;  2X2W A;  3LL5 A;  2J5T A;  4NDQ B;  3QVH A;  1OH9 A;  3S6K A;  2A1F A;  2OGX B;  3TVI A;  2OGX A;  3L76 A;  4A7X A;  3U6U A;  3AB2 A;  3C1N A;  1Z9D A;  4NDR B;  2J0W A;  2V5H A;  4NDR A;  3K4O A;  2E9Y A;  2J4L A;  3KZF A;  2HMF A;  3LL9 A;  3C20 A;  4NDP A;  4JZ7 A;  3EK5 A;  2BUF A;  3AB4 A;  2J5V A;  3C1M A;  3QVF A;  2JJX A;  2WE5 A;  3ZZH A;  3D40 A;  2WXB A;  4Q1T A;  1GSJ A;  3B8G A;  3WWM A;  2W21 A;  2J4J A;  4AB7 A;  2BMU A;  4USJ A;  1OHA A;  2BRI A;  2BRX A;  2JI5 A;  3K52 A;  4NDP B;  3T7B A;  2CDQ A;  1B7B A;  2R8V A;  4A7W A;  2J4K A;  2V4Y A;  2BND A;  2BTY A;  2JJ4 A;  2WE4 A;  2RD5 A;  3K56 A;  4JZ9 A;  3D41 A;  3L86 A;  4F6T B;  1E19 A;  3S6H A;  3ZZG A;  3K4Y A;  4AXS A;  4JZ8 A;  4NDO A;  3WWN A;  2J0X A;  3D2P A;  2AKO A;  2R98 A;  4KZT A;  3QUN A;  2BNE A;  2VA1 A;  2IJ9 A;  3ZZF A; 
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similar chains in the pdb database (?% sequence similarity)

 
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