3WWNA

Crystal structure of lysz from thermus thermophilus complex with lysw
Total Genus 92
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
269
structure length
263
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Putative acetylglutamate kinase-like protein
publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
molecule tags Metal binding protein/transferase
total genus 92
structure length 263
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwnA00
1GS5A 3WWNA 4F6TB 3K4YA 3K52A 2AKOA 2BNFA 3LKKA 3C1MA 3QURA 2J0XA 1OHBA 3K56A 4NDRB 3QVHA 1B7BA 2HMFA 4KZTA 4USJA 4Q1TA 2J5TA 3D2MA 2BNEA 3ZZHA 4JZ7A 3S6GA 2VA1A 2AP9A 2V5HA 3S6KA 4A7WA 2J0WA 3WWMA 2OGXA 3LL9A 4F6TA 2J5VA 2R8VA 2J4KA 3K4OA 3ZZGA 2IJ9A 3AAWA 4NDRA 3U6UA 2W21A 3NWYA 3QUNA 2JJ4A 3D41A 4NDQB 4I49A 2BMUA 3AB2A 2J4LA 4NDPB 3L86A 4JZ8A 3C20A 4OLCA 3LL5A 2A1FA 2E9YA 2X2WA 2WE5A 3C1NA 1YBDA 3EK6A 2BNDA 4NDOB 3D40A 4AXSA 2WXBA 1GSJA 3QUOA 2JI5A 2BRXA 1OHAA 1Z9DA 3B8GA 3AB4A 2BRIA 3S6HA 2OGXB 4NDPA 2BTYA 4A7XA 2CDQA 3L76A 2RD5A 2R98A 3ZZIA 3KZFA 2V4YA 4NDOA 3T7BA 2J4JA 3QVFA 2JJXA 4JZ9A 3TVIA 3D2PA 1OH9A 2BUFA 1E19A 4AB7A 4NDQA 2WE4A 3EK5A 3ZZFA
chains in the Genus database with same CATH superfamily
1GS5A 3WWNA 4F6TB 3K4YA 3K52A 2AKOA 2BNFA 3LKKA 3C1MA 3QURA 2J0XA 1OHBA 3K56A 4NDRB 3QVHA 1B7BA 2HMFA 4KZTA 4USJA 4Q1TA 2J5TA 3D2MA 2BNEA 3ZZHA 4JZ7A 3S6GA 2VA1A 2AP9A 2V5HA 3S6KA 4A7WA 2J0WA 3WWMA 2OGXA 3LL9A 4F6TA 2J5VA 2R8VA 2J4KA 3K4OA 3ZZGA 2IJ9A 3AAWA 4NDRA 3U6UA 2W21A 3NWYA 3QUNA 2JJ4A 3D41A 4NDQB 4I49A 2BMUA 3AB2A 2J4LA 4NDPB 3L86A 4JZ8A 3C20A 4OLCA 3LL5A 2A1FA 2E9YA 2X2WA 2WE5A 3C1NA 1YBDA 3EK6A 2BNDA 4NDOB 3D40A 4AXSA 2WXBA 1GSJA 3QUOA 2JI5A 2BRXA 1OHAA 1Z9DA 3B8GA 3AB4A 2BRIA 3S6HA 2OGXB 4NDPA 2BTYA 4A7XA 2CDQA 3L76A 2RD5A 2R98A 3ZZIA 3KZFA 2V4YA 4NDOA 3T7BA 2J4JA 3QVFA 2JJXA 4JZ9A 3TVIA 3D2PA 1OH9A 2BUFA 1E19A 4AB7A 4NDQA 2WE4A 3EK5A 3ZZFA
chains in the Genus database with same CATH topology
1GS5A 3WWNA 4F6TB 3K4YA 3K52A 2AKOA 2BNFA 3LKKA 3C1MA 3QURA 2J0XA 1OHBA 3K56A 4NDRB 3QVHA 1B7BA 2HMFA 4KZTA 4USJA 4Q1TA 2J5TA 3D2MA 2BNEA 3ZZHA 4JZ7A 3S6GA 2VA1A 2AP9A 2V5HA 3S6KA 4A7WA 2J0WA 3WWMA 2OGXA 3LL9A 4F6TA 2J5VA 2R8VA 2J4KA 3K4OA 3ZZGA 2IJ9A 3AAWA 4NDRA 3U6UA 2W21A 3NWYA 3QUNA 2JJ4A 3D41A 4NDQB 4I49A 2BMUA 3AB2A 2J4LA 4NDPB 3L86A 4JZ8A 3C20A 4OLCA 3LL5A 2A1FA 2E9YA 2X2WA 2WE5A 3C1NA 1YBDA 3EK6A 2BNDA 4NDOB 3D40A 4AXSA 2WXBA 1GSJA 3QUOA 2JI5A 2BRXA 1OHAA 1Z9DA 3B8GA 3AB4A 2BRIA 3S6HA 2OGXB 4NDPA 2BTYA 4A7XA 2CDQA 3L76A 2RD5A 2R98A 3ZZIA 3KZFA 2V4YA 4NDOA 3T7BA 2J4JA 3QVFA 2JJXA 4JZ9A 3TVIA 3D2PA 1OH9A 2BUFA 1E19A 4AB7A 4NDQA 2WE4A 3EK5A 3ZZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GS5 A;  3WWN A;  4F6T B;  3K4Y A;  3K52 A;  2AKO A;  2BNF A;  3LKK A;  3C1M A;  3QUR A;  2J0X A;  1OHB A;  3K56 A;  4NDR B;  3QVH A;  1B7B A;  2HMF A;  4KZT A;  4USJ A;  4Q1T A;  2J5T A;  3D2M A;  2BNE A;  3ZZH A;  4JZ7 A;  3S6G A;  2VA1 A;  2AP9 A;  2V5H A;  3S6K A;  4A7W A;  2J0W A;  3WWM A;  2OGX A;  3LL9 A;  4F6T A;  2J5V A;  2R8V A;  2J4K A;  3K4O A;  3ZZG A;  2IJ9 A;  3AAW A;  4NDR A;  3U6U A;  2W21 A;  3NWY A;  3QUN A;  2JJ4 A;  3D41 A;  4NDQ B;  4I49 A;  2BMU A;  3AB2 A;  2J4L A;  4NDP B;  3L86 A;  4JZ8 A;  3C20 A;  4OLC A;  3LL5 A;  2A1F A;  2E9Y A;  2X2W A;  2WE5 A;  3C1N A;  1YBD A;  3EK6 A;  2BND A;  4NDO B;  3D40 A;  4AXS A;  2WXB A;  1GSJ A;  3QUO A;  2JI5 A;  2BRX A;  1OHA A;  1Z9D A;  3B8G A;  3AB4 A;  2BRI A;  3S6H A;  2OGX B;  4NDP A;  2BTY A;  4A7X A;  2CDQ A;  3L76 A;  2RD5 A;  2R98 A;  3ZZI A;  3KZF A;  2V4Y A;  4NDO A;  3T7B A;  2J4J A;  3QVF A;  2JJX A;  4JZ9 A;  3TVI A;  3D2P A;  1OH9 A;  2BUF A;  1E19 A;  4AB7 A;  4NDQ A;  2WE4 A;  3EK5 A;  3ZZF A; 
#chains in the Genus database with same CATH topology
 1GS5 A;  3WWN A;  4F6T B;  3K4Y A;  3K52 A;  2AKO A;  2BNF A;  3LKK A;  3C1M A;  3QUR A;  2J0X A;  1OHB A;  3K56 A;  4NDR B;  3QVH A;  1B7B A;  2HMF A;  4KZT A;  4USJ A;  4Q1T A;  2J5T A;  3D2M A;  2BNE A;  3ZZH A;  4JZ7 A;  3S6G A;  2VA1 A;  2AP9 A;  2V5H A;  3S6K A;  4A7W A;  2J0W A;  3WWM A;  2OGX A;  3LL9 A;  4F6T A;  2J5V A;  2R8V A;  2J4K A;  3K4O A;  3ZZG A;  2IJ9 A;  3AAW A;  4NDR A;  3U6U A;  2W21 A;  3NWY A;  3QUN A;  2JJ4 A;  3D41 A;  4NDQ B;  4I49 A;  2BMU A;  3AB2 A;  2J4L A;  4NDP B;  3L86 A;  4JZ8 A;  3C20 A;  4OLC A;  3LL5 A;  2A1F A;  2E9Y A;  2X2W A;  2WE5 A;  3C1N A;  1YBD A;  3EK6 A;  2BND A;  4NDO B;  3D40 A;  4AXS A;  2WXB A;  1GSJ A;  3QUO A;  2JI5 A;  2BRX A;  1OHA A;  1Z9D A;  3B8G A;  3AB4 A;  2BRI A;  3S6H A;  2OGX B;  4NDP A;  2BTY A;  4A7X A;  2CDQ A;  3L76 A;  2RD5 A;  2R98 A;  3ZZI A;  3KZF A;  2V4Y A;  4NDO A;  3T7B A;  2J4J A;  3QVF A;  2JJX A;  4JZ9 A;  3TVI A;  3D2P A;  1OH9 A;  2BUF A;  1E19 A;  4AB7 A;  4NDQ A;  2WE4 A;  3EK5 A;  3ZZF A; 
#chains in the Genus database with same CATH homology
 1GS5 A;  3WWN A;  4F6T B;  3K4Y A;  3K52 A;  2AKO A;  2BNF A;  3LKK A;  3C1M A;  3QUR A;  2J0X A;  1OHB A;  3K56 A;  4NDR B;  3QVH A;  1B7B A;  2HMF A;  4KZT A;  4USJ A;  4Q1T A;  2J5T A;  3D2M A;  2BNE A;  3ZZH A;  4JZ7 A;  3S6G A;  2VA1 A;  2AP9 A;  2V5H A;  3S6K A;  4A7W A;  2J0W A;  3WWM A;  2OGX A;  3LL9 A;  4F6T A;  2J5V A;  2R8V A;  2J4K A;  3K4O A;  3ZZG A;  2IJ9 A;  3AAW A;  4NDR A;  3U6U A;  2W21 A;  3NWY A;  3QUN A;  2JJ4 A;  3D41 A;  4NDQ B;  4I49 A;  2BMU A;  3AB2 A;  2J4L A;  4NDP B;  3L86 A;  4JZ8 A;  3C20 A;  4OLC A;  3LL5 A;  2A1F A;  2E9Y A;  2X2W A;  2WE5 A;  3C1N A;  1YBD A;  3EK6 A;  2BND A;  4NDO B;  3D40 A;  4AXS A;  2WXB A;  1GSJ A;  3QUO A;  2JI5 A;  2BRX A;  1OHA A;  1Z9D A;  3B8G A;  3AB4 A;  2BRI A;  3S6H A;  2OGX B;  4NDP A;  2BTY A;  4A7X A;  2CDQ A;  3L76 A;  2RD5 A;  2R98 A;  3ZZI A;  3KZF A;  2V4Y A;  4NDO A;  3T7B A;  2J4J A;  3QVF A;  2JJX A;  4JZ9 A;  3TVI A;  3D2P A;  1OH9 A;  2BUF A;  1E19 A;  4AB7 A;  4NDQ A;  2WE4 A;  3EK5 A;  3ZZF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...