3WWNA

Crystal structure of lysz from thermus thermophilus complex with lysw
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
269
structure length
263
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
molecule tags Metal binding protein/transferase
molecule keywords Putative acetylglutamate kinase-like protein
total genus 92
structure length 263
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwnA00
3LL5A 3QURA 2V4YA 2JI5A 2HMFA 2V5HA 3QVHA 2JJXA 1OHBA 4AXSA 2J0WA 4F6TB 2J4LA 3K4OA 4NDOB 4NDPA 3ZZFA 1E19A 2BMUA 2R8VA 3C1NA 3U6UA 4JZ8A 3L76A 1OHAA 3LKKA 3AB4A 2J4JA 3EK5A 4Q1TA 4A7XA 3EK6A 1YBDA 4NDQA 1OH9A 2BRIA 2J0XA 2J5VA 4I49A 2BNFA 2A1FA 3T7BA 3D2MA 3LL9A 3WWNA 3D41A 2E9YA 4A7WA 4JZ7A 2RD5A 2J5TA 2OGXB 4AB7A 2BNEA 4OLCA 4NDPB 3NWYA 2W21A 2R98A 3C1MA 4NDRB 3K52A 2WXBA 2J4KA 4F6TA 4NDOA 3L86A 4NDRA 3TVIA 2BTYA 3ZZGA 4USJA 2X2WA 2WE4A 3S6KA 1GS5A 4JZ9A 2WE5A 2BRXA 2OGXA 3B8GA 3C20A 3S6GA 3WWMA 2AKOA 3KZFA 2VA1A 3K4YA 2AP9A 3S6HA 1GSJA 2CDQA 1Z9DA 3AB2A 3D2PA 2JJ4A 4KZTA 3D40A 4NDQB 1B7BA 3ZZIA 2BUFA 3QUOA 2IJ9A 2BNDA 3AAWA 3K56A 3QUNA 3ZZHA 3QVFA
chains in the Genus database with same CATH superfamily
3LL5A 3QURA 2V4YA 2JI5A 2HMFA 2V5HA 3QVHA 2JJXA 1OHBA 4AXSA 2J0WA 4F6TB 2J4LA 3K4OA 4NDOB 4NDPA 3ZZFA 1E19A 2BMUA 2R8VA 3C1NA 3U6UA 4JZ8A 3L76A 1OHAA 3LKKA 3AB4A 2J4JA 3EK5A 4Q1TA 4A7XA 3EK6A 1YBDA 4NDQA 1OH9A 2BRIA 2J0XA 2J5VA 4I49A 2BNFA 2A1FA 3T7BA 3D2MA 3LL9A 3WWNA 3D41A 2E9YA 4A7WA 4JZ7A 2RD5A 2J5TA 2OGXB 4AB7A 2BNEA 4OLCA 4NDPB 3NWYA 2W21A 2R98A 3C1MA 4NDRB 3K52A 2WXBA 2J4KA 4F6TA 4NDOA 3L86A 4NDRA 3TVIA 2BTYA 3ZZGA 4USJA 2X2WA 2WE4A 3S6KA 1GS5A 4JZ9A 2WE5A 2BRXA 2OGXA 3B8GA 3C20A 3S6GA 3WWMA 2AKOA 3KZFA 2VA1A 3K4YA 2AP9A 3S6HA 1GSJA 2CDQA 1Z9DA 3AB2A 3D2PA 2JJ4A 4KZTA 3D40A 4NDQB 1B7BA 3ZZIA 2BUFA 3QUOA 2IJ9A 2BNDA 3AAWA 3K56A 3QUNA 3ZZHA 3QVFA
chains in the Genus database with same CATH topology
3LL5A 3QURA 2V4YA 2JI5A 2HMFA 2V5HA 3QVHA 2JJXA 1OHBA 4AXSA 2J0WA 4F6TB 2J4LA 3K4OA 4NDOB 4NDPA 3ZZFA 1E19A 2BMUA 2R8VA 3C1NA 3U6UA 4JZ8A 3L76A 1OHAA 3LKKA 3AB4A 2J4JA 3EK5A 4Q1TA 4A7XA 3EK6A 1YBDA 4NDQA 1OH9A 2BRIA 2J0XA 2J5VA 4I49A 2BNFA 2A1FA 3T7BA 3D2MA 3LL9A 3WWNA 3D41A 2E9YA 4A7WA 4JZ7A 2RD5A 2J5TA 2OGXB 4AB7A 2BNEA 4OLCA 4NDPB 3NWYA 2W21A 2R98A 3C1MA 4NDRB 3K52A 2WXBA 2J4KA 4F6TA 4NDOA 3L86A 4NDRA 3TVIA 2BTYA 3ZZGA 4USJA 2X2WA 2WE4A 3S6KA 1GS5A 4JZ9A 2WE5A 2BRXA 2OGXA 3B8GA 3C20A 3S6GA 3WWMA 2AKOA 3KZFA 2VA1A 3K4YA 2AP9A 3S6HA 1GSJA 2CDQA 1Z9DA 3AB2A 3D2PA 2JJ4A 4KZTA 3D40A 4NDQB 1B7BA 3ZZIA 2BUFA 3QUOA 2IJ9A 2BNDA 3AAWA 3K56A 3QUNA 3ZZHA 3QVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL5 A;  3QUR A;  2V4Y A;  2JI5 A;  2HMF A;  2V5H A;  3QVH A;  2JJX A;  1OHB A;  4AXS A;  2J0W A;  4F6T B;  2J4L A;  3K4O A;  4NDO B;  4NDP A;  3ZZF A;  1E19 A;  2BMU A;  2R8V A;  3C1N A;  3U6U A;  4JZ8 A;  3L76 A;  1OHA A;  3LKK A;  3AB4 A;  2J4J A;  3EK5 A;  4Q1T A;  4A7X A;  3EK6 A;  1YBD A;  4NDQ A;  1OH9 A;  2BRI A;  2J0X A;  2J5V A;  4I49 A;  2BNF A;  2A1F A;  3T7B A;  3D2M A;  3LL9 A;  3WWN A;  3D41 A;  2E9Y A;  4A7W A;  4JZ7 A;  2RD5 A;  2J5T A;  2OGX B;  4AB7 A;  2BNE A;  4OLC A;  4NDP B;  3NWY A;  2W21 A;  2R98 A;  3C1M A;  4NDR B;  3K52 A;  2WXB A;  2J4K A;  4F6T A;  4NDO A;  3L86 A;  4NDR A;  3TVI A;  2BTY A;  3ZZG A;  4USJ A;  2X2W A;  2WE4 A;  3S6K A;  1GS5 A;  4JZ9 A;  2WE5 A;  2BRX A;  2OGX A;  3B8G A;  3C20 A;  3S6G A;  3WWM A;  2AKO A;  3KZF A;  2VA1 A;  3K4Y A;  2AP9 A;  3S6H A;  1GSJ A;  2CDQ A;  1Z9D A;  3AB2 A;  3D2P A;  2JJ4 A;  4KZT A;  3D40 A;  4NDQ B;  1B7B A;  3ZZI A;  2BUF A;  3QUO A;  2IJ9 A;  2BND A;  3AAW A;  3K56 A;  3QUN A;  3ZZH A;  3QVF A; 
#chains in the Genus database with same CATH topology
 3LL5 A;  3QUR A;  2V4Y A;  2JI5 A;  2HMF A;  2V5H A;  3QVH A;  2JJX A;  1OHB A;  4AXS A;  2J0W A;  4F6T B;  2J4L A;  3K4O A;  4NDO B;  4NDP A;  3ZZF A;  1E19 A;  2BMU A;  2R8V A;  3C1N A;  3U6U A;  4JZ8 A;  3L76 A;  1OHA A;  3LKK A;  3AB4 A;  2J4J A;  3EK5 A;  4Q1T A;  4A7X A;  3EK6 A;  1YBD A;  4NDQ A;  1OH9 A;  2BRI A;  2J0X A;  2J5V A;  4I49 A;  2BNF A;  2A1F A;  3T7B A;  3D2M A;  3LL9 A;  3WWN A;  3D41 A;  2E9Y A;  4A7W A;  4JZ7 A;  2RD5 A;  2J5T A;  2OGX B;  4AB7 A;  2BNE A;  4OLC A;  4NDP B;  3NWY A;  2W21 A;  2R98 A;  3C1M A;  4NDR B;  3K52 A;  2WXB A;  2J4K A;  4F6T A;  4NDO A;  3L86 A;  4NDR A;  3TVI A;  2BTY A;  3ZZG A;  4USJ A;  2X2W A;  2WE4 A;  3S6K A;  1GS5 A;  4JZ9 A;  2WE5 A;  2BRX A;  2OGX A;  3B8G A;  3C20 A;  3S6G A;  3WWM A;  2AKO A;  3KZF A;  2VA1 A;  3K4Y A;  2AP9 A;  3S6H A;  1GSJ A;  2CDQ A;  1Z9D A;  3AB2 A;  3D2P A;  2JJ4 A;  4KZT A;  3D40 A;  4NDQ B;  1B7B A;  3ZZI A;  2BUF A;  3QUO A;  2IJ9 A;  2BND A;  3AAW A;  3K56 A;  3QUN A;  3ZZH A;  3QVF A; 
#chains in the Genus database with same CATH homology
 3LL5 A;  3QUR A;  2V4Y A;  2JI5 A;  2HMF A;  2V5H A;  3QVH A;  2JJX A;  1OHB A;  4AXS A;  2J0W A;  4F6T B;  2J4L A;  3K4O A;  4NDO B;  4NDP A;  3ZZF A;  1E19 A;  2BMU A;  2R8V A;  3C1N A;  3U6U A;  4JZ8 A;  3L76 A;  1OHA A;  3LKK A;  3AB4 A;  2J4J A;  3EK5 A;  4Q1T A;  4A7X A;  3EK6 A;  1YBD A;  4NDQ A;  1OH9 A;  2BRI A;  2J0X A;  2J5V A;  4I49 A;  2BNF A;  2A1F A;  3T7B A;  3D2M A;  3LL9 A;  3WWN A;  3D41 A;  2E9Y A;  4A7W A;  4JZ7 A;  2RD5 A;  2J5T A;  2OGX B;  4AB7 A;  2BNE A;  4OLC A;  4NDP B;  3NWY A;  2W21 A;  2R98 A;  3C1M A;  4NDR B;  3K52 A;  2WXB A;  2J4K A;  4F6T A;  4NDO A;  3L86 A;  4NDR A;  3TVI A;  2BTY A;  3ZZG A;  4USJ A;  2X2W A;  2WE4 A;  3S6K A;  1GS5 A;  4JZ9 A;  2WE5 A;  2BRX A;  2OGX A;  3B8G A;  3C20 A;  3S6G A;  3WWM A;  2AKO A;  3KZF A;  2VA1 A;  3K4Y A;  2AP9 A;  3S6H A;  1GSJ A;  2CDQ A;  1Z9D A;  3AB2 A;  3D2P A;  2JJ4 A;  4KZT A;  3D40 A;  4NDQ B;  1B7B A;  3ZZI A;  2BUF A;  3QUO A;  2IJ9 A;  2BND A;  3AAW A;  3K56 A;  3QUN A;  3ZZH A;  3QVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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