3WWNA

Crystal structure of lysz from thermus thermophilus complex with lysw
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
269
structure length
263
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein/transferase
molecule keywords Putative acetylglutamate kinase-like protein
publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
total genus 92
structure length 263
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwnA00
4Q1TA 2JJ4A 4KZTA 2WE4A 2WXBA 3L86A 2V5HA 2J5TA 3B8GA 3QUOA 2A1FA 2R98A 3QURA 3D2MA 3K52A 4NDOA 2X2WA 3LL9A 1YBDA 3D41A 3C1NA 4JZ7A 4NDQA 1Z9DA 4F6TB 1GS5A 3QVHA 2BNDA 3L76A 3EK6A 2J4LA 3AB2A 3U6UA 3ZZFA 2OGXB 3AAWA 3C20A 2V4YA 3WWNA 4A7XA 3KZFA 2R8VA 4AXSA 3QUNA 3ZZGA 2HMFA 2J4JA 2J0XA 2WE5A 3LKKA 4USJA 2W21A 4F6TA 3D40A 4NDPB 2RD5A 2IJ9A 3T7BA 2BMUA 3S6GA 3ZZIA 2VA1A 1GSJA 3QVFA 3S6KA 1E19A 4OLCA 2OGXA 2J4KA 2BUFA 3K4OA 3EK5A 2CDQA 4JZ8A 4AB7A 4NDRB 2E9YA 4I49A 3K56A 4NDPA 3C1MA 4NDQB 4JZ9A 3TVIA 2BNFA 3NWYA 4A7WA 3ZZHA 1OHAA 3WWMA 2BRXA 2JJXA 3D2PA 2J5VA 3K4YA 1OHBA 2BNEA 2AP9A 3LL5A 1OH9A 2BRIA 4NDRA 2JI5A 4NDOB 1B7BA 2AKOA 2BTYA 3AB4A 2J0WA 3S6HA
chains in the Genus database with same CATH superfamily
4Q1TA 2JJ4A 4KZTA 2WE4A 2WXBA 3L86A 2V5HA 2J5TA 3B8GA 3QUOA 2A1FA 2R98A 3QURA 3D2MA 3K52A 4NDOA 2X2WA 3LL9A 1YBDA 3D41A 3C1NA 4JZ7A 4NDQA 1Z9DA 4F6TB 1GS5A 3QVHA 2BNDA 3L76A 3EK6A 2J4LA 3AB2A 3U6UA 3ZZFA 2OGXB 3AAWA 3C20A 2V4YA 3WWNA 4A7XA 3KZFA 2R8VA 4AXSA 3QUNA 3ZZGA 2HMFA 2J4JA 2J0XA 2WE5A 3LKKA 4USJA 2W21A 4F6TA 3D40A 4NDPB 2RD5A 2IJ9A 3T7BA 2BMUA 3S6GA 3ZZIA 2VA1A 1GSJA 3QVFA 3S6KA 1E19A 4OLCA 2OGXA 2J4KA 2BUFA 3K4OA 3EK5A 2CDQA 4JZ8A 4AB7A 4NDRB 2E9YA 4I49A 3K56A 4NDPA 3C1MA 4NDQB 4JZ9A 3TVIA 2BNFA 3NWYA 4A7WA 3ZZHA 1OHAA 3WWMA 2BRXA 2JJXA 3D2PA 2J5VA 3K4YA 1OHBA 2BNEA 2AP9A 3LL5A 1OH9A 2BRIA 4NDRA 2JI5A 4NDOB 1B7BA 2AKOA 2BTYA 3AB4A 2J0WA 3S6HA
chains in the Genus database with same CATH topology
4Q1TA 2JJ4A 4KZTA 2WE4A 2WXBA 3L86A 2V5HA 2J5TA 3B8GA 3QUOA 2A1FA 2R98A 3QURA 3D2MA 3K52A 4NDOA 2X2WA 3LL9A 1YBDA 3D41A 3C1NA 4JZ7A 4NDQA 1Z9DA 4F6TB 1GS5A 3QVHA 2BNDA 3L76A 3EK6A 2J4LA 3AB2A 3U6UA 3ZZFA 2OGXB 3AAWA 3C20A 2V4YA 3WWNA 4A7XA 3KZFA 2R8VA 4AXSA 3QUNA 3ZZGA 2HMFA 2J4JA 2J0XA 2WE5A 3LKKA 4USJA 2W21A 4F6TA 3D40A 4NDPB 2RD5A 2IJ9A 3T7BA 2BMUA 3S6GA 3ZZIA 2VA1A 1GSJA 3QVFA 3S6KA 1E19A 4OLCA 2OGXA 2J4KA 2BUFA 3K4OA 3EK5A 2CDQA 4JZ8A 4AB7A 4NDRB 2E9YA 4I49A 3K56A 4NDPA 3C1MA 4NDQB 4JZ9A 3TVIA 2BNFA 3NWYA 4A7WA 3ZZHA 1OHAA 3WWMA 2BRXA 2JJXA 3D2PA 2J5VA 3K4YA 1OHBA 2BNEA 2AP9A 3LL5A 1OH9A 2BRIA 4NDRA 2JI5A 4NDOB 1B7BA 2AKOA 2BTYA 3AB4A 2J0WA 3S6HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q1T A;  2JJ4 A;  4KZT A;  2WE4 A;  2WXB A;  3L86 A;  2V5H A;  2J5T A;  3B8G A;  3QUO A;  2A1F A;  2R98 A;  3QUR A;  3D2M A;  3K52 A;  4NDO A;  2X2W A;  3LL9 A;  1YBD A;  3D41 A;  3C1N A;  4JZ7 A;  4NDQ A;  1Z9D A;  4F6T B;  1GS5 A;  3QVH A;  2BND A;  3L76 A;  3EK6 A;  2J4L A;  3AB2 A;  3U6U A;  3ZZF A;  2OGX B;  3AAW A;  3C20 A;  2V4Y A;  3WWN A;  4A7X A;  3KZF A;  2R8V A;  4AXS A;  3QUN A;  3ZZG A;  2HMF A;  2J4J A;  2J0X A;  2WE5 A;  3LKK A;  4USJ A;  2W21 A;  4F6T A;  3D40 A;  4NDP B;  2RD5 A;  2IJ9 A;  3T7B A;  2BMU A;  3S6G A;  3ZZI A;  2VA1 A;  1GSJ A;  3QVF A;  3S6K A;  1E19 A;  4OLC A;  2OGX A;  2J4K A;  2BUF A;  3K4O A;  3EK5 A;  2CDQ A;  4JZ8 A;  4AB7 A;  4NDR B;  2E9Y A;  4I49 A;  3K56 A;  4NDP A;  3C1M A;  4NDQ B;  4JZ9 A;  3TVI A;  2BNF A;  3NWY A;  4A7W A;  3ZZH A;  1OHA A;  3WWM A;  2BRX A;  2JJX A;  3D2P A;  2J5V A;  3K4Y A;  1OHB A;  2BNE A;  2AP9 A;  3LL5 A;  1OH9 A;  2BRI A;  4NDR A;  2JI5 A;  4NDO B;  1B7B A;  2AKO A;  2BTY A;  3AB4 A;  2J0W A;  3S6H A; 
#chains in the Genus database with same CATH topology
 4Q1T A;  2JJ4 A;  4KZT A;  2WE4 A;  2WXB A;  3L86 A;  2V5H A;  2J5T A;  3B8G A;  3QUO A;  2A1F A;  2R98 A;  3QUR A;  3D2M A;  3K52 A;  4NDO A;  2X2W A;  3LL9 A;  1YBD A;  3D41 A;  3C1N A;  4JZ7 A;  4NDQ A;  1Z9D A;  4F6T B;  1GS5 A;  3QVH A;  2BND A;  3L76 A;  3EK6 A;  2J4L A;  3AB2 A;  3U6U A;  3ZZF A;  2OGX B;  3AAW A;  3C20 A;  2V4Y A;  3WWN A;  4A7X A;  3KZF A;  2R8V A;  4AXS A;  3QUN A;  3ZZG A;  2HMF A;  2J4J A;  2J0X A;  2WE5 A;  3LKK A;  4USJ A;  2W21 A;  4F6T A;  3D40 A;  4NDP B;  2RD5 A;  2IJ9 A;  3T7B A;  2BMU A;  3S6G A;  3ZZI A;  2VA1 A;  1GSJ A;  3QVF A;  3S6K A;  1E19 A;  4OLC A;  2OGX A;  2J4K A;  2BUF A;  3K4O A;  3EK5 A;  2CDQ A;  4JZ8 A;  4AB7 A;  4NDR B;  2E9Y A;  4I49 A;  3K56 A;  4NDP A;  3C1M A;  4NDQ B;  4JZ9 A;  3TVI A;  2BNF A;  3NWY A;  4A7W A;  3ZZH A;  1OHA A;  3WWM A;  2BRX A;  2JJX A;  3D2P A;  2J5V A;  3K4Y A;  1OHB A;  2BNE A;  2AP9 A;  3LL5 A;  1OH9 A;  2BRI A;  4NDR A;  2JI5 A;  4NDO B;  1B7B A;  2AKO A;  2BTY A;  3AB4 A;  2J0W A;  3S6H A; 
#chains in the Genus database with same CATH homology
 4Q1T A;  2JJ4 A;  4KZT A;  2WE4 A;  2WXB A;  3L86 A;  2V5H A;  2J5T A;  3B8G A;  3QUO A;  2A1F A;  2R98 A;  3QUR A;  3D2M A;  3K52 A;  4NDO A;  2X2W A;  3LL9 A;  1YBD A;  3D41 A;  3C1N A;  4JZ7 A;  4NDQ A;  1Z9D A;  4F6T B;  1GS5 A;  3QVH A;  2BND A;  3L76 A;  3EK6 A;  2J4L A;  3AB2 A;  3U6U A;  3ZZF A;  2OGX B;  3AAW A;  3C20 A;  2V4Y A;  3WWN A;  4A7X A;  3KZF A;  2R8V A;  4AXS A;  3QUN A;  3ZZG A;  2HMF A;  2J4J A;  2J0X A;  2WE5 A;  3LKK A;  4USJ A;  2W21 A;  4F6T A;  3D40 A;  4NDP B;  2RD5 A;  2IJ9 A;  3T7B A;  2BMU A;  3S6G A;  3ZZI A;  2VA1 A;  1GSJ A;  3QVF A;  3S6K A;  1E19 A;  4OLC A;  2OGX A;  2J4K A;  2BUF A;  3K4O A;  3EK5 A;  2CDQ A;  4JZ8 A;  4AB7 A;  4NDR B;  2E9Y A;  4I49 A;  3K56 A;  4NDP A;  3C1M A;  4NDQ B;  4JZ9 A;  3TVI A;  2BNF A;  3NWY A;  4A7W A;  3ZZH A;  1OHA A;  3WWM A;  2BRX A;  2JJX A;  3D2P A;  2J5V A;  3K4Y A;  1OHB A;  2BNE A;  2AP9 A;  3LL5 A;  1OH9 A;  2BRI A;  4NDR A;  2JI5 A;  4NDO B;  1B7B A;  2AKO A;  2BTY A;  3AB4 A;  2J0W A;  3S6H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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