3WWNA

Crystal structure of lysz from thermus thermophilus complex with lysw
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
269
structure length
263
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
molecule tags Metal binding protein/transferase
source organism Thermus thermophilus hb27
molecule keywords Putative acetylglutamate kinase-like protein
total genus 92
structure length 263
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwnA00
3EK5A 2AKOA 3EK6A 2BNFA 3K52A 1OH9A 3S6HA 3QURA 2W21A 3WWMA 2JI5A 4I49A 4USJA 1E19A 3B8GA 2E9YA 2R8VA 3S6KA 4JZ7A 2WE5A 4F6TA 3L76A 4A7XA 3D40A 4JZ8A 3QUOA 4NDRA 2J0XA 4KZTA 3NWYA 2A1FA 3LL5A 4F6TB 3K56A 3LL9A 3QVFA 3QUNA 2BRXA 2BTYA 2J5VA 2BNDA 2CDQA 4OLCA 1GS5A 3KZFA 4NDRB 3QVHA 3S6GA 4AXSA 4A7WA 2WE4A 2J4LA 2J5TA 2JJXA 2WXBA 2X2WA 1OHBA 3C1NA 4NDQA 4NDOA 2V4YA 3D2MA 3ZZHA 4AB7A 3AAWA 2AP9A 4NDPA 3T7BA 3C20A 3D2PA 3TVIA 2BUFA 2J4KA 2JJ4A 2J4JA 2R98A 2BRIA 2J0WA 2OGXA 2V5HA 2HMFA 2BMUA 1B7BA 4NDQB 4NDOB 3D41A 2VA1A 3U6UA 1GSJA 3K4YA 3L86A 4NDPB 2BNEA 2RD5A 2IJ9A 1YBDA 4Q1TA 3ZZIA 3WWNA 1Z9DA 1OHAA 3AB2A 2OGXB 3ZZFA 3AB4A 3C1MA 3K4OA 3ZZGA 3LKKA 4JZ9A
chains in the Genus database with same CATH superfamily
3EK5A 2AKOA 3EK6A 2BNFA 3K52A 1OH9A 3S6HA 3QURA 2W21A 3WWMA 2JI5A 4I49A 4USJA 1E19A 3B8GA 2E9YA 2R8VA 3S6KA 4JZ7A 2WE5A 4F6TA 3L76A 4A7XA 3D40A 4JZ8A 3QUOA 4NDRA 2J0XA 4KZTA 3NWYA 2A1FA 3LL5A 4F6TB 3K56A 3LL9A 3QVFA 3QUNA 2BRXA 2BTYA 2J5VA 2BNDA 2CDQA 4OLCA 1GS5A 3KZFA 4NDRB 3QVHA 3S6GA 4AXSA 4A7WA 2WE4A 2J4LA 2J5TA 2JJXA 2WXBA 2X2WA 1OHBA 3C1NA 4NDQA 4NDOA 2V4YA 3D2MA 3ZZHA 4AB7A 3AAWA 2AP9A 4NDPA 3T7BA 3C20A 3D2PA 3TVIA 2BUFA 2J4KA 2JJ4A 2J4JA 2R98A 2BRIA 2J0WA 2OGXA 2V5HA 2HMFA 2BMUA 1B7BA 4NDQB 4NDOB 3D41A 2VA1A 3U6UA 1GSJA 3K4YA 3L86A 4NDPB 2BNEA 2RD5A 2IJ9A 1YBDA 4Q1TA 3ZZIA 3WWNA 1Z9DA 1OHAA 3AB2A 2OGXB 3ZZFA 3AB4A 3C1MA 3K4OA 3ZZGA 3LKKA 4JZ9A
chains in the Genus database with same CATH topology
3EK5A 2AKOA 3EK6A 2BNFA 3K52A 1OH9A 3S6HA 3QURA 2W21A 3WWMA 2JI5A 4I49A 4USJA 1E19A 3B8GA 2E9YA 2R8VA 3S6KA 4JZ7A 2WE5A 4F6TA 3L76A 4A7XA 3D40A 4JZ8A 3QUOA 4NDRA 2J0XA 4KZTA 3NWYA 2A1FA 3LL5A 4F6TB 3K56A 3LL9A 3QVFA 3QUNA 2BRXA 2BTYA 2J5VA 2BNDA 2CDQA 4OLCA 1GS5A 3KZFA 4NDRB 3QVHA 3S6GA 4AXSA 4A7WA 2WE4A 2J4LA 2J5TA 2JJXA 2WXBA 2X2WA 1OHBA 3C1NA 4NDQA 4NDOA 2V4YA 3D2MA 3ZZHA 4AB7A 3AAWA 2AP9A 4NDPA 3T7BA 3C20A 3D2PA 3TVIA 2BUFA 2J4KA 2JJ4A 2J4JA 2R98A 2BRIA 2J0WA 2OGXA 2V5HA 2HMFA 2BMUA 1B7BA 4NDQB 4NDOB 3D41A 2VA1A 3U6UA 1GSJA 3K4YA 3L86A 4NDPB 2BNEA 2RD5A 2IJ9A 1YBDA 4Q1TA 3ZZIA 3WWNA 1Z9DA 1OHAA 3AB2A 2OGXB 3ZZFA 3AB4A 3C1MA 3K4OA 3ZZGA 3LKKA 4JZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EK5 A;  2AKO A;  3EK6 A;  2BNF A;  3K52 A;  1OH9 A;  3S6H A;  3QUR A;  2W21 A;  3WWM A;  2JI5 A;  4I49 A;  4USJ A;  1E19 A;  3B8G A;  2E9Y A;  2R8V A;  3S6K A;  4JZ7 A;  2WE5 A;  4F6T A;  3L76 A;  4A7X A;  3D40 A;  4JZ8 A;  3QUO A;  4NDR A;  2J0X A;  4KZT A;  3NWY A;  2A1F A;  3LL5 A;  4F6T B;  3K56 A;  3LL9 A;  3QVF A;  3QUN A;  2BRX A;  2BTY A;  2J5V A;  2BND A;  2CDQ A;  4OLC A;  1GS5 A;  3KZF A;  4NDR B;  3QVH A;  3S6G A;  4AXS A;  4A7W A;  2WE4 A;  2J4L A;  2J5T A;  2JJX A;  2WXB A;  2X2W A;  1OHB A;  3C1N A;  4NDQ A;  4NDO A;  2V4Y A;  3D2M A;  3ZZH A;  4AB7 A;  3AAW A;  2AP9 A;  4NDP A;  3T7B A;  3C20 A;  3D2P A;  3TVI A;  2BUF A;  2J4K A;  2JJ4 A;  2J4J A;  2R98 A;  2BRI A;  2J0W A;  2OGX A;  2V5H A;  2HMF A;  2BMU A;  1B7B A;  4NDQ B;  4NDO B;  3D41 A;  2VA1 A;  3U6U A;  1GSJ A;  3K4Y A;  3L86 A;  4NDP B;  2BNE A;  2RD5 A;  2IJ9 A;  1YBD A;  4Q1T A;  3ZZI A;  3WWN A;  1Z9D A;  1OHA A;  3AB2 A;  2OGX B;  3ZZF A;  3AB4 A;  3C1M A;  3K4O A;  3ZZG A;  3LKK A;  4JZ9 A; 
#chains in the Genus database with same CATH topology
 3EK5 A;  2AKO A;  3EK6 A;  2BNF A;  3K52 A;  1OH9 A;  3S6H A;  3QUR A;  2W21 A;  3WWM A;  2JI5 A;  4I49 A;  4USJ A;  1E19 A;  3B8G A;  2E9Y A;  2R8V A;  3S6K A;  4JZ7 A;  2WE5 A;  4F6T A;  3L76 A;  4A7X A;  3D40 A;  4JZ8 A;  3QUO A;  4NDR A;  2J0X A;  4KZT A;  3NWY A;  2A1F A;  3LL5 A;  4F6T B;  3K56 A;  3LL9 A;  3QVF A;  3QUN A;  2BRX A;  2BTY A;  2J5V A;  2BND A;  2CDQ A;  4OLC A;  1GS5 A;  3KZF A;  4NDR B;  3QVH A;  3S6G A;  4AXS A;  4A7W A;  2WE4 A;  2J4L A;  2J5T A;  2JJX A;  2WXB A;  2X2W A;  1OHB A;  3C1N A;  4NDQ A;  4NDO A;  2V4Y A;  3D2M A;  3ZZH A;  4AB7 A;  3AAW A;  2AP9 A;  4NDP A;  3T7B A;  3C20 A;  3D2P A;  3TVI A;  2BUF A;  2J4K A;  2JJ4 A;  2J4J A;  2R98 A;  2BRI A;  2J0W A;  2OGX A;  2V5H A;  2HMF A;  2BMU A;  1B7B A;  4NDQ B;  4NDO B;  3D41 A;  2VA1 A;  3U6U A;  1GSJ A;  3K4Y A;  3L86 A;  4NDP B;  2BNE A;  2RD5 A;  2IJ9 A;  1YBD A;  4Q1T A;  3ZZI A;  3WWN A;  1Z9D A;  1OHA A;  3AB2 A;  2OGX B;  3ZZF A;  3AB4 A;  3C1M A;  3K4O A;  3ZZG A;  3LKK A;  4JZ9 A; 
#chains in the Genus database with same CATH homology
 3EK5 A;  2AKO A;  3EK6 A;  2BNF A;  3K52 A;  1OH9 A;  3S6H A;  3QUR A;  2W21 A;  3WWM A;  2JI5 A;  4I49 A;  4USJ A;  1E19 A;  3B8G A;  2E9Y A;  2R8V A;  3S6K A;  4JZ7 A;  2WE5 A;  4F6T A;  3L76 A;  4A7X A;  3D40 A;  4JZ8 A;  3QUO A;  4NDR A;  2J0X A;  4KZT A;  3NWY A;  2A1F A;  3LL5 A;  4F6T B;  3K56 A;  3LL9 A;  3QVF A;  3QUN A;  2BRX A;  2BTY A;  2J5V A;  2BND A;  2CDQ A;  4OLC A;  1GS5 A;  3KZF A;  4NDR B;  3QVH A;  3S6G A;  4AXS A;  4A7W A;  2WE4 A;  2J4L A;  2J5T A;  2JJX A;  2WXB A;  2X2W A;  1OHB A;  3C1N A;  4NDQ A;  4NDO A;  2V4Y A;  3D2M A;  3ZZH A;  4AB7 A;  3AAW A;  2AP9 A;  4NDP A;  3T7B A;  3C20 A;  3D2P A;  3TVI A;  2BUF A;  2J4K A;  2JJ4 A;  2J4J A;  2R98 A;  2BRI A;  2J0W A;  2OGX A;  2V5H A;  2HMF A;  2BMU A;  1B7B A;  4NDQ B;  4NDO B;  3D41 A;  2VA1 A;  3U6U A;  1GSJ A;  3K4Y A;  3L86 A;  4NDP B;  2BNE A;  2RD5 A;  2IJ9 A;  1YBD A;  4Q1T A;  3ZZI A;  3WWN A;  1Z9D A;  1OHA A;  3AB2 A;  2OGX B;  3ZZF A;  3AB4 A;  3C1M A;  3K4O A;  3ZZG A;  3LKK A;  4JZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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