3WWNA

Crystal structure of lysz from thermus thermophilus complex with lysw
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
269
structure length
263
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEGRMKRKVMGAVEAVRGGVKRVVFADARVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative acetylglutamate kinase-like protein
publication title Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
doi rcsb
source organism Thermus thermophilus hb27
molecule tags Metal binding protein/transferase
total genus 92
structure length 263
sequence length 269
ec nomenclature
pdb deposition date 2014-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3wwnA00
3QURA 4NDPB 3K56A 4F6TA 3AB2A 3WWMA 4Q1TA 3LL5A 4JZ9A 2J4JA 2BMUA 2V5HA 2WE5A 4AB7A 4USJA 3ZZGA 3D40A 2A1FA 2BRIA 2AP9A 3NWYA 4NDPA 3LL9A 2BUFA 1Z9DA 1B7BA 2X2WA 4JZ8A 3EK6A 1GSJA 3K4YA 3AAWA 3S6GA 3AB4A 3LKKA 3S6HA 1E19A 1OHBA 2J4KA 4I49A 3D41A 2JJ4A 1OHAA 2IJ9A 2WE4A 3C1NA 2J5VA 3QUOA 3C20A 3D2PA 3U6UA 2J5TA 2RD5A 3ZZHA 1GS5A 3QVFA 4NDQB 3QUNA 4OLCA 3WWNA 4A7WA 4NDRB 3KZFA 3L76A 2CDQA 3C1MA 2HMFA 2JJXA 2J0XA 2AKOA 3B8GA 3S6KA 3EK5A 3QVHA 1OH9A 2E9YA 3D2MA 1YBDA 4NDQA 3T7BA 2WXBA 3TVIA 2OGXB 3L86A 4NDOB 2V4YA 2W21A 2BTYA 2J0WA 2R98A 4KZTA 4NDRA 3ZZIA 3K4OA 2BNDA 2JI5A 4F6TB 2BNFA 2J4LA 4JZ7A 2R8VA 2BNEA 4A7XA 2OGXA 3K52A 4NDOA 3ZZFA 2BRXA 2VA1A 4AXSA
chains in the Genus database with same CATH superfamily
3QURA 4NDPB 3K56A 4F6TA 3AB2A 3WWMA 4Q1TA 3LL5A 4JZ9A 2J4JA 2BMUA 2V5HA 2WE5A 4AB7A 4USJA 3ZZGA 3D40A 2A1FA 2BRIA 2AP9A 3NWYA 4NDPA 3LL9A 2BUFA 1Z9DA 1B7BA 2X2WA 4JZ8A 3EK6A 1GSJA 3K4YA 3AAWA 3S6GA 3AB4A 3LKKA 3S6HA 1E19A 1OHBA 2J4KA 4I49A 3D41A 2JJ4A 1OHAA 2IJ9A 2WE4A 3C1NA 2J5VA 3QUOA 3C20A 3D2PA 3U6UA 2J5TA 2RD5A 3ZZHA 1GS5A 3QVFA 4NDQB 3QUNA 4OLCA 3WWNA 4A7WA 4NDRB 3KZFA 3L76A 2CDQA 3C1MA 2HMFA 2JJXA 2J0XA 2AKOA 3B8GA 3S6KA 3EK5A 3QVHA 1OH9A 2E9YA 3D2MA 1YBDA 4NDQA 3T7BA 2WXBA 3TVIA 2OGXB 3L86A 4NDOB 2V4YA 2W21A 2BTYA 2J0WA 2R98A 4KZTA 4NDRA 3ZZIA 3K4OA 2BNDA 2JI5A 4F6TB 2BNFA 2J4LA 4JZ7A 2R8VA 2BNEA 4A7XA 2OGXA 3K52A 4NDOA 3ZZFA 2BRXA 2VA1A 4AXSA
chains in the Genus database with same CATH topology
3QURA 4NDPB 3K56A 4F6TA 3AB2A 3WWMA 4Q1TA 3LL5A 4JZ9A 2J4JA 2BMUA 2V5HA 2WE5A 4AB7A 4USJA 3ZZGA 3D40A 2A1FA 2BRIA 2AP9A 3NWYA 4NDPA 3LL9A 2BUFA 1Z9DA 1B7BA 2X2WA 4JZ8A 3EK6A 1GSJA 3K4YA 3AAWA 3S6GA 3AB4A 3LKKA 3S6HA 1E19A 1OHBA 2J4KA 4I49A 3D41A 2JJ4A 1OHAA 2IJ9A 2WE4A 3C1NA 2J5VA 3QUOA 3C20A 3D2PA 3U6UA 2J5TA 2RD5A 3ZZHA 1GS5A 3QVFA 4NDQB 3QUNA 4OLCA 3WWNA 4A7WA 4NDRB 3KZFA 3L76A 2CDQA 3C1MA 2HMFA 2JJXA 2J0XA 2AKOA 3B8GA 3S6KA 3EK5A 3QVHA 1OH9A 2E9YA 3D2MA 1YBDA 4NDQA 3T7BA 2WXBA 3TVIA 2OGXB 3L86A 4NDOB 2V4YA 2W21A 2BTYA 2J0WA 2R98A 4KZTA 4NDRA 3ZZIA 3K4OA 2BNDA 2JI5A 4F6TB 2BNFA 2J4LA 4JZ7A 2R8VA 2BNEA 4A7XA 2OGXA 3K52A 4NDOA 3ZZFA 2BRXA 2VA1A 4AXSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QUR A;  4NDP B;  3K56 A;  4F6T A;  3AB2 A;  3WWM A;  4Q1T A;  3LL5 A;  4JZ9 A;  2J4J A;  2BMU A;  2V5H A;  2WE5 A;  4AB7 A;  4USJ A;  3ZZG A;  3D40 A;  2A1F A;  2BRI A;  2AP9 A;  3NWY A;  4NDP A;  3LL9 A;  2BUF A;  1Z9D A;  1B7B A;  2X2W A;  4JZ8 A;  3EK6 A;  1GSJ A;  3K4Y A;  3AAW A;  3S6G A;  3AB4 A;  3LKK A;  3S6H A;  1E19 A;  1OHB A;  2J4K A;  4I49 A;  3D41 A;  2JJ4 A;  1OHA A;  2IJ9 A;  2WE4 A;  3C1N A;  2J5V A;  3QUO A;  3C20 A;  3D2P A;  3U6U A;  2J5T A;  2RD5 A;  3ZZH A;  1GS5 A;  3QVF A;  4NDQ B;  3QUN A;  4OLC A;  3WWN A;  4A7W A;  4NDR B;  3KZF A;  3L76 A;  2CDQ A;  3C1M A;  2HMF A;  2JJX A;  2J0X A;  2AKO A;  3B8G A;  3S6K A;  3EK5 A;  3QVH A;  1OH9 A;  2E9Y A;  3D2M A;  1YBD A;  4NDQ A;  3T7B A;  2WXB A;  3TVI A;  2OGX B;  3L86 A;  4NDO B;  2V4Y A;  2W21 A;  2BTY A;  2J0W A;  2R98 A;  4KZT A;  4NDR A;  3ZZI A;  3K4O A;  2BND A;  2JI5 A;  4F6T B;  2BNF A;  2J4L A;  4JZ7 A;  2R8V A;  2BNE A;  4A7X A;  2OGX A;  3K52 A;  4NDO A;  3ZZF A;  2BRX A;  2VA1 A;  4AXS A; 
#chains in the Genus database with same CATH topology
 3QUR A;  4NDP B;  3K56 A;  4F6T A;  3AB2 A;  3WWM A;  4Q1T A;  3LL5 A;  4JZ9 A;  2J4J A;  2BMU A;  2V5H A;  2WE5 A;  4AB7 A;  4USJ A;  3ZZG A;  3D40 A;  2A1F A;  2BRI A;  2AP9 A;  3NWY A;  4NDP A;  3LL9 A;  2BUF A;  1Z9D A;  1B7B A;  2X2W A;  4JZ8 A;  3EK6 A;  1GSJ A;  3K4Y A;  3AAW A;  3S6G A;  3AB4 A;  3LKK A;  3S6H A;  1E19 A;  1OHB A;  2J4K A;  4I49 A;  3D41 A;  2JJ4 A;  1OHA A;  2IJ9 A;  2WE4 A;  3C1N A;  2J5V A;  3QUO A;  3C20 A;  3D2P A;  3U6U A;  2J5T A;  2RD5 A;  3ZZH A;  1GS5 A;  3QVF A;  4NDQ B;  3QUN A;  4OLC A;  3WWN A;  4A7W A;  4NDR B;  3KZF A;  3L76 A;  2CDQ A;  3C1M A;  2HMF A;  2JJX A;  2J0X A;  2AKO A;  3B8G A;  3S6K A;  3EK5 A;  3QVH A;  1OH9 A;  2E9Y A;  3D2M A;  1YBD A;  4NDQ A;  3T7B A;  2WXB A;  3TVI A;  2OGX B;  3L86 A;  4NDO B;  2V4Y A;  2W21 A;  2BTY A;  2J0W A;  2R98 A;  4KZT A;  4NDR A;  3ZZI A;  3K4O A;  2BND A;  2JI5 A;  4F6T B;  2BNF A;  2J4L A;  4JZ7 A;  2R8V A;  2BNE A;  4A7X A;  2OGX A;  3K52 A;  4NDO A;  3ZZF A;  2BRX A;  2VA1 A;  4AXS A; 
#chains in the Genus database with same CATH homology
 3QUR A;  4NDP B;  3K56 A;  4F6T A;  3AB2 A;  3WWM A;  4Q1T A;  3LL5 A;  4JZ9 A;  2J4J A;  2BMU A;  2V5H A;  2WE5 A;  4AB7 A;  4USJ A;  3ZZG A;  3D40 A;  2A1F A;  2BRI A;  2AP9 A;  3NWY A;  4NDP A;  3LL9 A;  2BUF A;  1Z9D A;  1B7B A;  2X2W A;  4JZ8 A;  3EK6 A;  1GSJ A;  3K4Y A;  3AAW A;  3S6G A;  3AB4 A;  3LKK A;  3S6H A;  1E19 A;  1OHB A;  2J4K A;  4I49 A;  3D41 A;  2JJ4 A;  1OHA A;  2IJ9 A;  2WE4 A;  3C1N A;  2J5V A;  3QUO A;  3C20 A;  3D2P A;  3U6U A;  2J5T A;  2RD5 A;  3ZZH A;  1GS5 A;  3QVF A;  4NDQ B;  3QUN A;  4OLC A;  3WWN A;  4A7W A;  4NDR B;  3KZF A;  3L76 A;  2CDQ A;  3C1M A;  2HMF A;  2JJX A;  2J0X A;  2AKO A;  3B8G A;  3S6K A;  3EK5 A;  3QVH A;  1OH9 A;  2E9Y A;  3D2M A;  1YBD A;  4NDQ A;  3T7B A;  2WXB A;  3TVI A;  2OGX B;  3L86 A;  4NDO B;  2V4Y A;  2W21 A;  2BTY A;  2J0W A;  2R98 A;  4KZT A;  4NDR A;  3ZZI A;  3K4O A;  2BND A;  2JI5 A;  4F6T B;  2BNF A;  2J4L A;  4JZ7 A;  2R8V A;  2BNE A;  4A7X A;  2OGX A;  3K52 A;  4NDO A;  3ZZF A;  2BRX A;  2VA1 A;  4AXS A; 
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similar chains in the Genus database (?% sequence similarity)
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