4NDRA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
total genus 81
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndrA00
3C20A 3S6KA 2JJ4A 3K4OA 3LKKA 3S6HA 3B8GA 3D40A 2R98A 3QVHA 4AB7A 4NDRA 2BTYA 3QUNA 3ZZFA 1OHBA 2BRIA 3K4YA 4NDPA 3QURA 2OGXA 2WXBA 4NDOA 3D2MA 2HMFA 3AB2A 3EK5A 3AB4A 3QUOA 4Q1TA 4NDOB 4JZ8A 2J0WA 3EK6A 4I49A 2J0XA 2R8VA 2RD5A 4JZ9A 3ZZHA 3LL5A 2BNFA 2J5VA 2OGXB 1B7BA 1OH9A 2J4LA 4NDPB 3D2PA 3L76A 4NDQB 4OLCA 4JZ7A 2E9YA 1OHAA 2AP9A 4NDRB 3AAWA 2WE4A 3WWMA 2BMUA 2IJ9A 1Z9DA 1GS5A 3ZZIA 2JJXA 2AKOA 4USJA 2X2WA 4F6TA 4KZTA 2JI5A 3KZFA 3S6GA 2J4KA 3C1MA 1E19A 3C1NA 2BUFA 3NWYA 2A1FA 3QVFA 2CDQA 2BNDA 3WWNA 3U6UA 4A7XA 3K56A 2W21A 3L86A 2WE5A 1YBDA 4AXSA 2J4JA 3LL9A 2V5HA 3TVIA 3D41A 3T7BA 3K52A 4F6TB 2BRXA 1GSJA 2V4YA 3ZZGA 2BNEA 2VA1A 2J5TA 4A7WA 4NDQA
chains in the Genus database with same CATH superfamily
3C20A 3S6KA 2JJ4A 3K4OA 3LKKA 3S6HA 3B8GA 3D40A 2R98A 3QVHA 4AB7A 4NDRA 2BTYA 3QUNA 3ZZFA 1OHBA 2BRIA 3K4YA 4NDPA 3QURA 2OGXA 2WXBA 4NDOA 3D2MA 2HMFA 3AB2A 3EK5A 3AB4A 3QUOA 4Q1TA 4NDOB 4JZ8A 2J0WA 3EK6A 4I49A 2J0XA 2R8VA 2RD5A 4JZ9A 3ZZHA 3LL5A 2BNFA 2J5VA 2OGXB 1B7BA 1OH9A 2J4LA 4NDPB 3D2PA 3L76A 4NDQB 4OLCA 4JZ7A 2E9YA 1OHAA 2AP9A 4NDRB 3AAWA 2WE4A 3WWMA 2BMUA 2IJ9A 1Z9DA 1GS5A 3ZZIA 2JJXA 2AKOA 4USJA 2X2WA 4F6TA 4KZTA 2JI5A 3KZFA 3S6GA 2J4KA 3C1MA 1E19A 3C1NA 2BUFA 3NWYA 2A1FA 3QVFA 2CDQA 2BNDA 3WWNA 3U6UA 4A7XA 3K56A 2W21A 3L86A 2WE5A 1YBDA 4AXSA 2J4JA 3LL9A 2V5HA 3TVIA 3D41A 3T7BA 3K52A 4F6TB 2BRXA 1GSJA 2V4YA 3ZZGA 2BNEA 2VA1A 2J5TA 4A7WA 4NDQA
chains in the Genus database with same CATH topology
3C20A 3S6KA 2JJ4A 3K4OA 3LKKA 3S6HA 3B8GA 3D40A 2R98A 3QVHA 4AB7A 4NDRA 2BTYA 3QUNA 3ZZFA 1OHBA 2BRIA 3K4YA 4NDPA 3QURA 2OGXA 2WXBA 4NDOA 3D2MA 2HMFA 3AB2A 3EK5A 3AB4A 3QUOA 4Q1TA 4NDOB 4JZ8A 2J0WA 3EK6A 4I49A 2J0XA 2R8VA 2RD5A 4JZ9A 3ZZHA 3LL5A 2BNFA 2J5VA 2OGXB 1B7BA 1OH9A 2J4LA 4NDPB 3D2PA 3L76A 4NDQB 4OLCA 4JZ7A 2E9YA 1OHAA 2AP9A 4NDRB 3AAWA 2WE4A 3WWMA 2BMUA 2IJ9A 1Z9DA 1GS5A 3ZZIA 2JJXA 2AKOA 4USJA 2X2WA 4F6TA 4KZTA 2JI5A 3KZFA 3S6GA 2J4KA 3C1MA 1E19A 3C1NA 2BUFA 3NWYA 2A1FA 3QVFA 2CDQA 2BNDA 3WWNA 3U6UA 4A7XA 3K56A 2W21A 3L86A 2WE5A 1YBDA 4AXSA 2J4JA 3LL9A 2V5HA 3TVIA 3D41A 3T7BA 3K52A 4F6TB 2BRXA 1GSJA 2V4YA 3ZZGA 2BNEA 2VA1A 2J5TA 4A7WA 4NDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C20 A;  3S6K A;  2JJ4 A;  3K4O A;  3LKK A;  3S6H A;  3B8G A;  3D40 A;  2R98 A;  3QVH A;  4AB7 A;  4NDR A;  2BTY A;  3QUN A;  3ZZF A;  1OHB A;  2BRI A;  3K4Y A;  4NDP A;  3QUR A;  2OGX A;  2WXB A;  4NDO A;  3D2M A;  2HMF A;  3AB2 A;  3EK5 A;  3AB4 A;  3QUO A;  4Q1T A;  4NDO B;  4JZ8 A;  2J0W A;  3EK6 A;  4I49 A;  2J0X A;  2R8V A;  2RD5 A;  4JZ9 A;  3ZZH A;  3LL5 A;  2BNF A;  2J5V A;  2OGX B;  1B7B A;  1OH9 A;  2J4L A;  4NDP B;  3D2P A;  3L76 A;  4NDQ B;  4OLC A;  4JZ7 A;  2E9Y A;  1OHA A;  2AP9 A;  4NDR B;  3AAW A;  2WE4 A;  3WWM A;  2BMU A;  2IJ9 A;  1Z9D A;  1GS5 A;  3ZZI A;  2JJX A;  2AKO A;  4USJ A;  2X2W A;  4F6T A;  4KZT A;  2JI5 A;  3KZF A;  3S6G A;  2J4K A;  3C1M A;  1E19 A;  3C1N A;  2BUF A;  3NWY A;  2A1F A;  3QVF A;  2CDQ A;  2BND A;  3WWN A;  3U6U A;  4A7X A;  3K56 A;  2W21 A;  3L86 A;  2WE5 A;  1YBD A;  4AXS A;  2J4J A;  3LL9 A;  2V5H A;  3TVI A;  3D41 A;  3T7B A;  3K52 A;  4F6T B;  2BRX A;  1GSJ A;  2V4Y A;  3ZZG A;  2BNE A;  2VA1 A;  2J5T A;  4A7W A;  4NDQ A; 
#chains in the Genus database with same CATH topology
 3C20 A;  3S6K A;  2JJ4 A;  3K4O A;  3LKK A;  3S6H A;  3B8G A;  3D40 A;  2R98 A;  3QVH A;  4AB7 A;  4NDR A;  2BTY A;  3QUN A;  3ZZF A;  1OHB A;  2BRI A;  3K4Y A;  4NDP A;  3QUR A;  2OGX A;  2WXB A;  4NDO A;  3D2M A;  2HMF A;  3AB2 A;  3EK5 A;  3AB4 A;  3QUO A;  4Q1T A;  4NDO B;  4JZ8 A;  2J0W A;  3EK6 A;  4I49 A;  2J0X A;  2R8V A;  2RD5 A;  4JZ9 A;  3ZZH A;  3LL5 A;  2BNF A;  2J5V A;  2OGX B;  1B7B A;  1OH9 A;  2J4L A;  4NDP B;  3D2P A;  3L76 A;  4NDQ B;  4OLC A;  4JZ7 A;  2E9Y A;  1OHA A;  2AP9 A;  4NDR B;  3AAW A;  2WE4 A;  3WWM A;  2BMU A;  2IJ9 A;  1Z9D A;  1GS5 A;  3ZZI A;  2JJX A;  2AKO A;  4USJ A;  2X2W A;  4F6T A;  4KZT A;  2JI5 A;  3KZF A;  3S6G A;  2J4K A;  3C1M A;  1E19 A;  3C1N A;  2BUF A;  3NWY A;  2A1F A;  3QVF A;  2CDQ A;  2BND A;  3WWN A;  3U6U A;  4A7X A;  3K56 A;  2W21 A;  3L86 A;  2WE5 A;  1YBD A;  4AXS A;  2J4J A;  3LL9 A;  2V5H A;  3TVI A;  3D41 A;  3T7B A;  3K52 A;  4F6T B;  2BRX A;  1GSJ A;  2V4Y A;  3ZZG A;  2BNE A;  2VA1 A;  2J5T A;  4A7W A;  4NDQ A; 
#chains in the Genus database with same CATH homology
 3C20 A;  3S6K A;  2JJ4 A;  3K4O A;  3LKK A;  3S6H A;  3B8G A;  3D40 A;  2R98 A;  3QVH A;  4AB7 A;  4NDR A;  2BTY A;  3QUN A;  3ZZF A;  1OHB A;  2BRI A;  3K4Y A;  4NDP A;  3QUR A;  2OGX A;  2WXB A;  4NDO A;  3D2M A;  2HMF A;  3AB2 A;  3EK5 A;  3AB4 A;  3QUO A;  4Q1T A;  4NDO B;  4JZ8 A;  2J0W A;  3EK6 A;  4I49 A;  2J0X A;  2R8V A;  2RD5 A;  4JZ9 A;  3ZZH A;  3LL5 A;  2BNF A;  2J5V A;  2OGX B;  1B7B A;  1OH9 A;  2J4L A;  4NDP B;  3D2P A;  3L76 A;  4NDQ B;  4OLC A;  4JZ7 A;  2E9Y A;  1OHA A;  2AP9 A;  4NDR B;  3AAW A;  2WE4 A;  3WWM A;  2BMU A;  2IJ9 A;  1Z9D A;  1GS5 A;  3ZZI A;  2JJX A;  2AKO A;  4USJ A;  2X2W A;  4F6T A;  4KZT A;  2JI5 A;  3KZF A;  3S6G A;  2J4K A;  3C1M A;  1E19 A;  3C1N A;  2BUF A;  3NWY A;  2A1F A;  3QVF A;  2CDQ A;  2BND A;  3WWN A;  3U6U A;  4A7X A;  3K56 A;  2W21 A;  3L86 A;  2WE5 A;  1YBD A;  4AXS A;  2J4J A;  3LL9 A;  2V5H A;  3TVI A;  3D41 A;  3T7B A;  3K52 A;  4F6T B;  2BRX A;  1GSJ A;  2V4Y A;  3ZZG A;  2BNE A;  2VA1 A;  2J5T A;  4A7W A;  4NDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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