4NDRA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
total genus 81
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndrA00
2BUFA 2R98A 2OGXB 3QVFA 3U6UA 1YBDA 2BNDA 2RD5A 3WWMA 2J4KA 2V4YA 4KZTA 3S6GA 4NDQB 3ZZGA 1OHBA 3L76A 2JI5A 2WE4A 3K4YA 3LKKA 2J4JA 3D2PA 4NDPA 2AKOA 3ZZFA 2J5VA 2OGXA 3QUNA 4NDRB 3TVIA 1OHAA 4NDPB 2BNEA 2WXBA 3D40A 2WE5A 4JZ8A 1E19A 2E9YA 4I49A 3AB4A 1Z9DA 3C20A 2J0XA 2X2WA 2JJXA 3WWNA 3S6HA 2J5TA 1GS5A 3QVHA 3EK5A 4AXSA 3QUOA 3B8GA 2W21A 3K52A 4NDRA 2J0WA 2BNFA 4NDQA 3C1MA 3S6KA 3K4OA 3QURA 2J4LA 3LL9A 4Q1TA 3D41A 3ZZHA 2BMUA 2BTYA 3NWYA 2BRIA 4F6TA 3AB2A 2A1FA 1GSJA 4JZ9A 4AB7A 1B7BA 3T7BA 2BRXA 3K56A 4NDOB 2AP9A 4F6TB 3AAWA 3ZZIA 4A7WA 2JJ4A 3EK6A 2HMFA 4USJA 4OLCA 4NDOA 3KZFA 3C1NA 3LL5A 2R8VA 2IJ9A 4A7XA 2CDQA 2VA1A 3L86A 1OH9A 3D2MA 2V5HA 4JZ7A
chains in the Genus database with same CATH superfamily
2BUFA 2R98A 2OGXB 3QVFA 3U6UA 1YBDA 2BNDA 2RD5A 3WWMA 2J4KA 2V4YA 4KZTA 3S6GA 4NDQB 3ZZGA 1OHBA 3L76A 2JI5A 2WE4A 3K4YA 3LKKA 2J4JA 3D2PA 4NDPA 2AKOA 3ZZFA 2J5VA 2OGXA 3QUNA 4NDRB 3TVIA 1OHAA 4NDPB 2BNEA 2WXBA 3D40A 2WE5A 4JZ8A 1E19A 2E9YA 4I49A 3AB4A 1Z9DA 3C20A 2J0XA 2X2WA 2JJXA 3WWNA 3S6HA 2J5TA 1GS5A 3QVHA 3EK5A 4AXSA 3QUOA 3B8GA 2W21A 3K52A 4NDRA 2J0WA 2BNFA 4NDQA 3C1MA 3S6KA 3K4OA 3QURA 2J4LA 3LL9A 4Q1TA 3D41A 3ZZHA 2BMUA 2BTYA 3NWYA 2BRIA 4F6TA 3AB2A 2A1FA 1GSJA 4JZ9A 4AB7A 1B7BA 3T7BA 2BRXA 3K56A 4NDOB 2AP9A 4F6TB 3AAWA 3ZZIA 4A7WA 2JJ4A 3EK6A 2HMFA 4USJA 4OLCA 4NDOA 3KZFA 3C1NA 3LL5A 2R8VA 2IJ9A 4A7XA 2CDQA 2VA1A 3L86A 1OH9A 3D2MA 2V5HA 4JZ7A
chains in the Genus database with same CATH topology
2BUFA 2R98A 2OGXB 3QVFA 3U6UA 1YBDA 2BNDA 2RD5A 3WWMA 2J4KA 2V4YA 4KZTA 3S6GA 4NDQB 3ZZGA 1OHBA 3L76A 2JI5A 2WE4A 3K4YA 3LKKA 2J4JA 3D2PA 4NDPA 2AKOA 3ZZFA 2J5VA 2OGXA 3QUNA 4NDRB 3TVIA 1OHAA 4NDPB 2BNEA 2WXBA 3D40A 2WE5A 4JZ8A 1E19A 2E9YA 4I49A 3AB4A 1Z9DA 3C20A 2J0XA 2X2WA 2JJXA 3WWNA 3S6HA 2J5TA 1GS5A 3QVHA 3EK5A 4AXSA 3QUOA 3B8GA 2W21A 3K52A 4NDRA 2J0WA 2BNFA 4NDQA 3C1MA 3S6KA 3K4OA 3QURA 2J4LA 3LL9A 4Q1TA 3D41A 3ZZHA 2BMUA 2BTYA 3NWYA 2BRIA 4F6TA 3AB2A 2A1FA 1GSJA 4JZ9A 4AB7A 1B7BA 3T7BA 2BRXA 3K56A 4NDOB 2AP9A 4F6TB 3AAWA 3ZZIA 4A7WA 2JJ4A 3EK6A 2HMFA 4USJA 4OLCA 4NDOA 3KZFA 3C1NA 3LL5A 2R8VA 2IJ9A 4A7XA 2CDQA 2VA1A 3L86A 1OH9A 3D2MA 2V5HA 4JZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUF A;  2R98 A;  2OGX B;  3QVF A;  3U6U A;  1YBD A;  2BND A;  2RD5 A;  3WWM A;  2J4K A;  2V4Y A;  4KZT A;  3S6G A;  4NDQ B;  3ZZG A;  1OHB A;  3L76 A;  2JI5 A;  2WE4 A;  3K4Y A;  3LKK A;  2J4J A;  3D2P A;  4NDP A;  2AKO A;  3ZZF A;  2J5V A;  2OGX A;  3QUN A;  4NDR B;  3TVI A;  1OHA A;  4NDP B;  2BNE A;  2WXB A;  3D40 A;  2WE5 A;  4JZ8 A;  1E19 A;  2E9Y A;  4I49 A;  3AB4 A;  1Z9D A;  3C20 A;  2J0X A;  2X2W A;  2JJX A;  3WWN A;  3S6H A;  2J5T A;  1GS5 A;  3QVH A;  3EK5 A;  4AXS A;  3QUO A;  3B8G A;  2W21 A;  3K52 A;  4NDR A;  2J0W A;  2BNF A;  4NDQ A;  3C1M A;  3S6K A;  3K4O A;  3QUR A;  2J4L A;  3LL9 A;  4Q1T A;  3D41 A;  3ZZH A;  2BMU A;  2BTY A;  3NWY A;  2BRI A;  4F6T A;  3AB2 A;  2A1F A;  1GSJ A;  4JZ9 A;  4AB7 A;  1B7B A;  3T7B A;  2BRX A;  3K56 A;  4NDO B;  2AP9 A;  4F6T B;  3AAW A;  3ZZI A;  4A7W A;  2JJ4 A;  3EK6 A;  2HMF A;  4USJ A;  4OLC A;  4NDO A;  3KZF A;  3C1N A;  3LL5 A;  2R8V A;  2IJ9 A;  4A7X A;  2CDQ A;  2VA1 A;  3L86 A;  1OH9 A;  3D2M A;  2V5H A;  4JZ7 A; 
#chains in the Genus database with same CATH topology
 2BUF A;  2R98 A;  2OGX B;  3QVF A;  3U6U A;  1YBD A;  2BND A;  2RD5 A;  3WWM A;  2J4K A;  2V4Y A;  4KZT A;  3S6G A;  4NDQ B;  3ZZG A;  1OHB A;  3L76 A;  2JI5 A;  2WE4 A;  3K4Y A;  3LKK A;  2J4J A;  3D2P A;  4NDP A;  2AKO A;  3ZZF A;  2J5V A;  2OGX A;  3QUN A;  4NDR B;  3TVI A;  1OHA A;  4NDP B;  2BNE A;  2WXB A;  3D40 A;  2WE5 A;  4JZ8 A;  1E19 A;  2E9Y A;  4I49 A;  3AB4 A;  1Z9D A;  3C20 A;  2J0X A;  2X2W A;  2JJX A;  3WWN A;  3S6H A;  2J5T A;  1GS5 A;  3QVH A;  3EK5 A;  4AXS A;  3QUO A;  3B8G A;  2W21 A;  3K52 A;  4NDR A;  2J0W A;  2BNF A;  4NDQ A;  3C1M A;  3S6K A;  3K4O A;  3QUR A;  2J4L A;  3LL9 A;  4Q1T A;  3D41 A;  3ZZH A;  2BMU A;  2BTY A;  3NWY A;  2BRI A;  4F6T A;  3AB2 A;  2A1F A;  1GSJ A;  4JZ9 A;  4AB7 A;  1B7B A;  3T7B A;  2BRX A;  3K56 A;  4NDO B;  2AP9 A;  4F6T B;  3AAW A;  3ZZI A;  4A7W A;  2JJ4 A;  3EK6 A;  2HMF A;  4USJ A;  4OLC A;  4NDO A;  3KZF A;  3C1N A;  3LL5 A;  2R8V A;  2IJ9 A;  4A7X A;  2CDQ A;  2VA1 A;  3L86 A;  1OH9 A;  3D2M A;  2V5H A;  4JZ7 A; 
#chains in the Genus database with same CATH homology
 2BUF A;  2R98 A;  2OGX B;  3QVF A;  3U6U A;  1YBD A;  2BND A;  2RD5 A;  3WWM A;  2J4K A;  2V4Y A;  4KZT A;  3S6G A;  4NDQ B;  3ZZG A;  1OHB A;  3L76 A;  2JI5 A;  2WE4 A;  3K4Y A;  3LKK A;  2J4J A;  3D2P A;  4NDP A;  2AKO A;  3ZZF A;  2J5V A;  2OGX A;  3QUN A;  4NDR B;  3TVI A;  1OHA A;  4NDP B;  2BNE A;  2WXB A;  3D40 A;  2WE5 A;  4JZ8 A;  1E19 A;  2E9Y A;  4I49 A;  3AB4 A;  1Z9D A;  3C20 A;  2J0X A;  2X2W A;  2JJX A;  3WWN A;  3S6H A;  2J5T A;  1GS5 A;  3QVH A;  3EK5 A;  4AXS A;  3QUO A;  3B8G A;  2W21 A;  3K52 A;  4NDR A;  2J0W A;  2BNF A;  4NDQ A;  3C1M A;  3S6K A;  3K4O A;  3QUR A;  2J4L A;  3LL9 A;  4Q1T A;  3D41 A;  3ZZH A;  2BMU A;  2BTY A;  3NWY A;  2BRI A;  4F6T A;  3AB2 A;  2A1F A;  1GSJ A;  4JZ9 A;  4AB7 A;  1B7B A;  3T7B A;  2BRX A;  3K56 A;  4NDO B;  2AP9 A;  4F6T B;  3AAW A;  3ZZI A;  4A7W A;  2JJ4 A;  3EK6 A;  2HMF A;  4USJ A;  4OLC A;  4NDO A;  3KZF A;  3C1N A;  3LL5 A;  2R8V A;  2IJ9 A;  4A7X A;  2CDQ A;  2VA1 A;  3L86 A;  1OH9 A;  3D2M A;  2V5H A;  4JZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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