4JZ7A

Carbamate kinase from giardia lamblia bound to amp-pnp
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
316
structure length
285
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 95
structure length 285
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz7A00
4NDOA 2OGXB 3AB4A 2HMFA 3LL5A 3C1NA 2BNEA 1B7BA 3EK5A 2JI5A 4F6TA 3LKKA 3T7BA 4A7XA 2A1FA 3ZZGA 3WWMA 2BNDA 3S6GA 3ZZHA 4AB7A 4NDPA 3B8GA 2V5HA 2E9YA 2WE5A 3QVHA 2IJ9A 2BTYA 3KZFA 3L76A 2CDQA 2J5VA 4NDOB 2WXBA 2J5TA 3K56A 2J0XA 2JJXA 1Z9DA 3S6KA 3U6UA 4OLCA 2VA1A 3TVIA 4F6TB 4NDRA 4NDRB 2BRIA 4I49A 4NDQA 3LL9A 2V4YA 3L86A 4NDQB 4NDPB 2BUFA 4KZTA 4JZ7A 4USJA 2AP9A 2W21A 3D2PA 2J4KA 2J4JA 3K4OA 3EK6A 2X2WA 2AKOA 4AXSA 3D2MA 4JZ9A 2RD5A 3WWNA 2J4LA 3AAWA 4Q1TA 1YBDA 1E19A 2JJ4A 2BMUA 1OHAA 1OHBA 3K52A 1OH9A 3NWYA 3S6HA 3D40A 2WE4A 2OGXA 3C20A 4A7WA 2R98A 3QUOA 2R8VA 3K4YA 3AB2A 3QUNA 4JZ8A 3QURA 2BRXA 3QVFA 3ZZIA 2BNFA 3D41A 2J0WA 3ZZFA 1GSJA 3C1MA 1GS5A
chains in the Genus database with same CATH superfamily
4NDOA 2OGXB 3AB4A 2HMFA 3LL5A 3C1NA 2BNEA 1B7BA 3EK5A 2JI5A 4F6TA 3LKKA 3T7BA 4A7XA 2A1FA 3ZZGA 3WWMA 2BNDA 3S6GA 3ZZHA 4AB7A 4NDPA 3B8GA 2V5HA 2E9YA 2WE5A 3QVHA 2IJ9A 2BTYA 3KZFA 3L76A 2CDQA 2J5VA 4NDOB 2WXBA 2J5TA 3K56A 2J0XA 2JJXA 1Z9DA 3S6KA 3U6UA 4OLCA 2VA1A 3TVIA 4F6TB 4NDRA 4NDRB 2BRIA 4I49A 4NDQA 3LL9A 2V4YA 3L86A 4NDQB 4NDPB 2BUFA 4KZTA 4JZ7A 4USJA 2AP9A 2W21A 3D2PA 2J4KA 2J4JA 3K4OA 3EK6A 2X2WA 2AKOA 4AXSA 3D2MA 4JZ9A 2RD5A 3WWNA 2J4LA 3AAWA 4Q1TA 1YBDA 1E19A 2JJ4A 2BMUA 1OHAA 1OHBA 3K52A 1OH9A 3NWYA 3S6HA 3D40A 2WE4A 2OGXA 3C20A 4A7WA 2R98A 3QUOA 2R8VA 3K4YA 3AB2A 3QUNA 4JZ8A 3QURA 2BRXA 3QVFA 3ZZIA 2BNFA 3D41A 2J0WA 3ZZFA 1GSJA 3C1MA 1GS5A
chains in the Genus database with same CATH topology
4NDOA 2OGXB 3AB4A 2HMFA 3LL5A 3C1NA 2BNEA 1B7BA 3EK5A 2JI5A 4F6TA 3LKKA 3T7BA 4A7XA 2A1FA 3ZZGA 3WWMA 2BNDA 3S6GA 3ZZHA 4AB7A 4NDPA 3B8GA 2V5HA 2E9YA 2WE5A 3QVHA 2IJ9A 2BTYA 3KZFA 3L76A 2CDQA 2J5VA 4NDOB 2WXBA 2J5TA 3K56A 2J0XA 2JJXA 1Z9DA 3S6KA 3U6UA 4OLCA 2VA1A 3TVIA 4F6TB 4NDRA 4NDRB 2BRIA 4I49A 4NDQA 3LL9A 2V4YA 3L86A 4NDQB 4NDPB 2BUFA 4KZTA 4JZ7A 4USJA 2AP9A 2W21A 3D2PA 2J4KA 2J4JA 3K4OA 3EK6A 2X2WA 2AKOA 4AXSA 3D2MA 4JZ9A 2RD5A 3WWNA 2J4LA 3AAWA 4Q1TA 1YBDA 1E19A 2JJ4A 2BMUA 1OHAA 1OHBA 3K52A 1OH9A 3NWYA 3S6HA 3D40A 2WE4A 2OGXA 3C20A 4A7WA 2R98A 3QUOA 2R8VA 3K4YA 3AB2A 3QUNA 4JZ8A 3QURA 2BRXA 3QVFA 3ZZIA 2BNFA 3D41A 2J0WA 3ZZFA 1GSJA 3C1MA 1GS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDO A;  2OGX B;  3AB4 A;  2HMF A;  3LL5 A;  3C1N A;  2BNE A;  1B7B A;  3EK5 A;  2JI5 A;  4F6T A;  3LKK A;  3T7B A;  4A7X A;  2A1F A;  3ZZG A;  3WWM A;  2BND A;  3S6G A;  3ZZH A;  4AB7 A;  4NDP A;  3B8G A;  2V5H A;  2E9Y A;  2WE5 A;  3QVH A;  2IJ9 A;  2BTY A;  3KZF A;  3L76 A;  2CDQ A;  2J5V A;  4NDO B;  2WXB A;  2J5T A;  3K56 A;  2J0X A;  2JJX A;  1Z9D A;  3S6K A;  3U6U A;  4OLC A;  2VA1 A;  3TVI A;  4F6T B;  4NDR A;  4NDR B;  2BRI A;  4I49 A;  4NDQ A;  3LL9 A;  2V4Y A;  3L86 A;  4NDQ B;  4NDP B;  2BUF A;  4KZT A;  4JZ7 A;  4USJ A;  2AP9 A;  2W21 A;  3D2P A;  2J4K A;  2J4J A;  3K4O A;  3EK6 A;  2X2W A;  2AKO A;  4AXS A;  3D2M A;  4JZ9 A;  2RD5 A;  3WWN A;  2J4L A;  3AAW A;  4Q1T A;  1YBD A;  1E19 A;  2JJ4 A;  2BMU A;  1OHA A;  1OHB A;  3K52 A;  1OH9 A;  3NWY A;  3S6H A;  3D40 A;  2WE4 A;  2OGX A;  3C20 A;  4A7W A;  2R98 A;  3QUO A;  2R8V A;  3K4Y A;  3AB2 A;  3QUN A;  4JZ8 A;  3QUR A;  2BRX A;  3QVF A;  3ZZI A;  2BNF A;  3D41 A;  2J0W A;  3ZZF A;  1GSJ A;  3C1M A;  1GS5 A; 
#chains in the Genus database with same CATH topology
 4NDO A;  2OGX B;  3AB4 A;  2HMF A;  3LL5 A;  3C1N A;  2BNE A;  1B7B A;  3EK5 A;  2JI5 A;  4F6T A;  3LKK A;  3T7B A;  4A7X A;  2A1F A;  3ZZG A;  3WWM A;  2BND A;  3S6G A;  3ZZH A;  4AB7 A;  4NDP A;  3B8G A;  2V5H A;  2E9Y A;  2WE5 A;  3QVH A;  2IJ9 A;  2BTY A;  3KZF A;  3L76 A;  2CDQ A;  2J5V A;  4NDO B;  2WXB A;  2J5T A;  3K56 A;  2J0X A;  2JJX A;  1Z9D A;  3S6K A;  3U6U A;  4OLC A;  2VA1 A;  3TVI A;  4F6T B;  4NDR A;  4NDR B;  2BRI A;  4I49 A;  4NDQ A;  3LL9 A;  2V4Y A;  3L86 A;  4NDQ B;  4NDP B;  2BUF A;  4KZT A;  4JZ7 A;  4USJ A;  2AP9 A;  2W21 A;  3D2P A;  2J4K A;  2J4J A;  3K4O A;  3EK6 A;  2X2W A;  2AKO A;  4AXS A;  3D2M A;  4JZ9 A;  2RD5 A;  3WWN A;  2J4L A;  3AAW A;  4Q1T A;  1YBD A;  1E19 A;  2JJ4 A;  2BMU A;  1OHA A;  1OHB A;  3K52 A;  1OH9 A;  3NWY A;  3S6H A;  3D40 A;  2WE4 A;  2OGX A;  3C20 A;  4A7W A;  2R98 A;  3QUO A;  2R8V A;  3K4Y A;  3AB2 A;  3QUN A;  4JZ8 A;  3QUR A;  2BRX A;  3QVF A;  3ZZI A;  2BNF A;  3D41 A;  2J0W A;  3ZZF A;  1GSJ A;  3C1M A;  1GS5 A; 
#chains in the Genus database with same CATH homology
 4NDO A;  2OGX B;  3AB4 A;  2HMF A;  3LL5 A;  3C1N A;  2BNE A;  1B7B A;  3EK5 A;  2JI5 A;  4F6T A;  3LKK A;  3T7B A;  4A7X A;  2A1F A;  3ZZG A;  3WWM A;  2BND A;  3S6G A;  3ZZH A;  4AB7 A;  4NDP A;  3B8G A;  2V5H A;  2E9Y A;  2WE5 A;  3QVH A;  2IJ9 A;  2BTY A;  3KZF A;  3L76 A;  2CDQ A;  2J5V A;  4NDO B;  2WXB A;  2J5T A;  3K56 A;  2J0X A;  2JJX A;  1Z9D A;  3S6K A;  3U6U A;  4OLC A;  2VA1 A;  3TVI A;  4F6T B;  4NDR A;  4NDR B;  2BRI A;  4I49 A;  4NDQ A;  3LL9 A;  2V4Y A;  3L86 A;  4NDQ B;  4NDP B;  2BUF A;  4KZT A;  4JZ7 A;  4USJ A;  2AP9 A;  2W21 A;  3D2P A;  2J4K A;  2J4J A;  3K4O A;  3EK6 A;  2X2W A;  2AKO A;  4AXS A;  3D2M A;  4JZ9 A;  2RD5 A;  3WWN A;  2J4L A;  3AAW A;  4Q1T A;  1YBD A;  1E19 A;  2JJ4 A;  2BMU A;  1OHA A;  1OHB A;  3K52 A;  1OH9 A;  3NWY A;  3S6H A;  3D40 A;  2WE4 A;  2OGX A;  3C20 A;  4A7W A;  2R98 A;  3QUO A;  2R8V A;  3K4Y A;  3AB2 A;  3QUN A;  4JZ8 A;  3QUR A;  2BRX A;  3QVF A;  3ZZI A;  2BNF A;  3D41 A;  2J0W A;  3ZZF A;  1GSJ A;  3C1M A;  1GS5 A; 
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