4JZ7A

Carbamate kinase from giardia lamblia bound to amp-pnp
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
316
structure length
285
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
molecule keywords Carbamate kinase
total genus 95
structure length 285
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz7A00
2V4YA 1OHAA 3D2MA 4NDQA 3C1MA 2J4KA 2X2WA 4F6TB 3AB4A 3QURA 4NDPB 3D41A 2W21A 3ZZFA 3U6UA 4AB7A 2BRIA 2VA1A 3EK6A 1GSJA 2V5HA 2BRXA 4JZ7A 2R8VA 2HMFA 1OH9A 2E9YA 3KZFA 4Q1TA 2OGXB 4NDRB 3ZZIA 2OGXA 3B8GA 2J0WA 2WXBA 1B7BA 2A1FA 3LL5A 1OHBA 4OLCA 2CDQA 3S6HA 3C1NA 3D40A 4I49A 3S6KA 2AP9A 3EK5A 3NWYA 3S6GA 2JJXA 4A7XA 2IJ9A 4F6TA 2BMUA 1E19A 3QUNA 4AXSA 2JJ4A 4NDOB 2BNEA 3LKKA 3ZZGA 3K52A 2J0XA 4A7WA 4JZ9A 2J5TA 3AAWA 2BNDA 2JI5A 2J5VA 3C20A 3D2PA 2AKOA 3QUOA 4JZ8A 3WWMA 1GS5A 4NDRA 2WE4A 3ZZHA 4NDQB 4KZTA 4USJA 2BTYA 3LL9A 3K4YA 2BNFA 2BUFA 2J4JA 2WE5A 3L86A 3T7BA 3AB2A 2R98A 4NDPA 3WWNA 3L76A 3K56A 2RD5A 3QVHA 1YBDA 3QVFA 4NDOA 1Z9DA 3K4OA 2J4LA 3TVIA
chains in the Genus database with same CATH superfamily
2V4YA 1OHAA 3D2MA 4NDQA 3C1MA 2J4KA 2X2WA 4F6TB 3AB4A 3QURA 4NDPB 3D41A 2W21A 3ZZFA 3U6UA 4AB7A 2BRIA 2VA1A 3EK6A 1GSJA 2V5HA 2BRXA 4JZ7A 2R8VA 2HMFA 1OH9A 2E9YA 3KZFA 4Q1TA 2OGXB 4NDRB 3ZZIA 2OGXA 3B8GA 2J0WA 2WXBA 1B7BA 2A1FA 3LL5A 1OHBA 4OLCA 2CDQA 3S6HA 3C1NA 3D40A 4I49A 3S6KA 2AP9A 3EK5A 3NWYA 3S6GA 2JJXA 4A7XA 2IJ9A 4F6TA 2BMUA 1E19A 3QUNA 4AXSA 2JJ4A 4NDOB 2BNEA 3LKKA 3ZZGA 3K52A 2J0XA 4A7WA 4JZ9A 2J5TA 3AAWA 2BNDA 2JI5A 2J5VA 3C20A 3D2PA 2AKOA 3QUOA 4JZ8A 3WWMA 1GS5A 4NDRA 2WE4A 3ZZHA 4NDQB 4KZTA 4USJA 2BTYA 3LL9A 3K4YA 2BNFA 2BUFA 2J4JA 2WE5A 3L86A 3T7BA 3AB2A 2R98A 4NDPA 3WWNA 3L76A 3K56A 2RD5A 3QVHA 1YBDA 3QVFA 4NDOA 1Z9DA 3K4OA 2J4LA 3TVIA
chains in the Genus database with same CATH topology
2V4YA 1OHAA 3D2MA 4NDQA 3C1MA 2J4KA 2X2WA 4F6TB 3AB4A 3QURA 4NDPB 3D41A 2W21A 3ZZFA 3U6UA 4AB7A 2BRIA 2VA1A 3EK6A 1GSJA 2V5HA 2BRXA 4JZ7A 2R8VA 2HMFA 1OH9A 2E9YA 3KZFA 4Q1TA 2OGXB 4NDRB 3ZZIA 2OGXA 3B8GA 2J0WA 2WXBA 1B7BA 2A1FA 3LL5A 1OHBA 4OLCA 2CDQA 3S6HA 3C1NA 3D40A 4I49A 3S6KA 2AP9A 3EK5A 3NWYA 3S6GA 2JJXA 4A7XA 2IJ9A 4F6TA 2BMUA 1E19A 3QUNA 4AXSA 2JJ4A 4NDOB 2BNEA 3LKKA 3ZZGA 3K52A 2J0XA 4A7WA 4JZ9A 2J5TA 3AAWA 2BNDA 2JI5A 2J5VA 3C20A 3D2PA 2AKOA 3QUOA 4JZ8A 3WWMA 1GS5A 4NDRA 2WE4A 3ZZHA 4NDQB 4KZTA 4USJA 2BTYA 3LL9A 3K4YA 2BNFA 2BUFA 2J4JA 2WE5A 3L86A 3T7BA 3AB2A 2R98A 4NDPA 3WWNA 3L76A 3K56A 2RD5A 3QVHA 1YBDA 3QVFA 4NDOA 1Z9DA 3K4OA 2J4LA 3TVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V4Y A;  1OHA A;  3D2M A;  4NDQ A;  3C1M A;  2J4K A;  2X2W A;  4F6T B;  3AB4 A;  3QUR A;  4NDP B;  3D41 A;  2W21 A;  3ZZF A;  3U6U A;  4AB7 A;  2BRI A;  2VA1 A;  3EK6 A;  1GSJ A;  2V5H A;  2BRX A;  4JZ7 A;  2R8V A;  2HMF A;  1OH9 A;  2E9Y A;  3KZF A;  4Q1T A;  2OGX B;  4NDR B;  3ZZI A;  2OGX A;  3B8G A;  2J0W A;  2WXB A;  1B7B A;  2A1F A;  3LL5 A;  1OHB A;  4OLC A;  2CDQ A;  3S6H A;  3C1N A;  3D40 A;  4I49 A;  3S6K A;  2AP9 A;  3EK5 A;  3NWY A;  3S6G A;  2JJX A;  4A7X A;  2IJ9 A;  4F6T A;  2BMU A;  1E19 A;  3QUN A;  4AXS A;  2JJ4 A;  4NDO B;  2BNE A;  3LKK A;  3ZZG A;  3K52 A;  2J0X A;  4A7W A;  4JZ9 A;  2J5T A;  3AAW A;  2BND A;  2JI5 A;  2J5V A;  3C20 A;  3D2P A;  2AKO A;  3QUO A;  4JZ8 A;  3WWM A;  1GS5 A;  4NDR A;  2WE4 A;  3ZZH A;  4NDQ B;  4KZT A;  4USJ A;  2BTY A;  3LL9 A;  3K4Y A;  2BNF A;  2BUF A;  2J4J A;  2WE5 A;  3L86 A;  3T7B A;  3AB2 A;  2R98 A;  4NDP A;  3WWN A;  3L76 A;  3K56 A;  2RD5 A;  3QVH A;  1YBD A;  3QVF A;  4NDO A;  1Z9D A;  3K4O A;  2J4L A;  3TVI A; 
#chains in the Genus database with same CATH topology
 2V4Y A;  1OHA A;  3D2M A;  4NDQ A;  3C1M A;  2J4K A;  2X2W A;  4F6T B;  3AB4 A;  3QUR A;  4NDP B;  3D41 A;  2W21 A;  3ZZF A;  3U6U A;  4AB7 A;  2BRI A;  2VA1 A;  3EK6 A;  1GSJ A;  2V5H A;  2BRX A;  4JZ7 A;  2R8V A;  2HMF A;  1OH9 A;  2E9Y A;  3KZF A;  4Q1T A;  2OGX B;  4NDR B;  3ZZI A;  2OGX A;  3B8G A;  2J0W A;  2WXB A;  1B7B A;  2A1F A;  3LL5 A;  1OHB A;  4OLC A;  2CDQ A;  3S6H A;  3C1N A;  3D40 A;  4I49 A;  3S6K A;  2AP9 A;  3EK5 A;  3NWY A;  3S6G A;  2JJX A;  4A7X A;  2IJ9 A;  4F6T A;  2BMU A;  1E19 A;  3QUN A;  4AXS A;  2JJ4 A;  4NDO B;  2BNE A;  3LKK A;  3ZZG A;  3K52 A;  2J0X A;  4A7W A;  4JZ9 A;  2J5T A;  3AAW A;  2BND A;  2JI5 A;  2J5V A;  3C20 A;  3D2P A;  2AKO A;  3QUO A;  4JZ8 A;  3WWM A;  1GS5 A;  4NDR A;  2WE4 A;  3ZZH A;  4NDQ B;  4KZT A;  4USJ A;  2BTY A;  3LL9 A;  3K4Y A;  2BNF A;  2BUF A;  2J4J A;  2WE5 A;  3L86 A;  3T7B A;  3AB2 A;  2R98 A;  4NDP A;  3WWN A;  3L76 A;  3K56 A;  2RD5 A;  3QVH A;  1YBD A;  3QVF A;  4NDO A;  1Z9D A;  3K4O A;  2J4L A;  3TVI A; 
#chains in the Genus database with same CATH homology
 2V4Y A;  1OHA A;  3D2M A;  4NDQ A;  3C1M A;  2J4K A;  2X2W A;  4F6T B;  3AB4 A;  3QUR A;  4NDP B;  3D41 A;  2W21 A;  3ZZF A;  3U6U A;  4AB7 A;  2BRI A;  2VA1 A;  3EK6 A;  1GSJ A;  2V5H A;  2BRX A;  4JZ7 A;  2R8V A;  2HMF A;  1OH9 A;  2E9Y A;  3KZF A;  4Q1T A;  2OGX B;  4NDR B;  3ZZI A;  2OGX A;  3B8G A;  2J0W A;  2WXB A;  1B7B A;  2A1F A;  3LL5 A;  1OHB A;  4OLC A;  2CDQ A;  3S6H A;  3C1N A;  3D40 A;  4I49 A;  3S6K A;  2AP9 A;  3EK5 A;  3NWY A;  3S6G A;  2JJX A;  4A7X A;  2IJ9 A;  4F6T A;  2BMU A;  1E19 A;  3QUN A;  4AXS A;  2JJ4 A;  4NDO B;  2BNE A;  3LKK A;  3ZZG A;  3K52 A;  2J0X A;  4A7W A;  4JZ9 A;  2J5T A;  3AAW A;  2BND A;  2JI5 A;  2J5V A;  3C20 A;  3D2P A;  2AKO A;  3QUO A;  4JZ8 A;  3WWM A;  1GS5 A;  4NDR A;  2WE4 A;  3ZZH A;  4NDQ B;  4KZT A;  4USJ A;  2BTY A;  3LL9 A;  3K4Y A;  2BNF A;  2BUF A;  2J4J A;  2WE5 A;  3L86 A;  3T7B A;  3AB2 A;  2R98 A;  4NDP A;  3WWN A;  3L76 A;  3K56 A;  2RD5 A;  3QVH A;  1YBD A;  3QVF A;  4NDO A;  1Z9D A;  3K4O A;  2J4L A;  3TVI A; 
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