4JZ7A

Carbamate kinase from giardia lamblia bound to amp-pnp
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
316
structure length
285
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
total genus 95
structure length 285
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz7A00
3LL9A 2JI5A 4F6TA 2BTYA 3D2PA 3D41A 3QVFA 3TVIA 3B8GA 3U6UA 3C1MA 2AKOA 3NWYA 2CDQA 3QURA 1GS5A 3LL5A 1Z9DA 1OHBA 4OLCA 4JZ9A 2A1FA 2BNDA 1OHAA 3K56A 2J0XA 4NDRB 1GSJA 3QUNA 2J0WA 4I49A 2X2WA 3K4YA 2OGXB 4AB7A 2J4JA 4F6TB 1B7BA 2WXBA 2HMFA 3EK6A 3T7BA 3D40A 4NDOB 4NDPA 2IJ9A 2AP9A 2R8VA 2WE5A 2WE4A 3QUOA 2J4LA 3QVHA 2E9YA 4JZ8A 3D2MA 3ZZIA 3AB4A 2JJ4A 3ZZGA 3EK5A 1YBDA 2J4KA 2BNFA 4JZ7A 3L86A 4NDQA 3L76A 2BRXA 3WWNA 4A7XA 3AB2A 3S6GA 1OH9A 2BNEA 4AXSA 3AAWA 2R98A 2J5VA 4NDPB 3S6HA 4KZTA 3K4OA 2JJXA 2V5HA 2RD5A 2V4YA 3C20A 3KZFA 3C1NA 2VA1A 4NDOA 3LKKA 4USJA 1E19A 3WWMA 2BUFA 2BRIA 3ZZFA 3S6KA 2BMUA 4NDRA 3ZZHA 4Q1TA 2J5TA 2W21A 3K52A 4A7WA 4NDQB 2OGXA
chains in the Genus database with same CATH superfamily
3LL9A 2JI5A 4F6TA 2BTYA 3D2PA 3D41A 3QVFA 3TVIA 3B8GA 3U6UA 3C1MA 2AKOA 3NWYA 2CDQA 3QURA 1GS5A 3LL5A 1Z9DA 1OHBA 4OLCA 4JZ9A 2A1FA 2BNDA 1OHAA 3K56A 2J0XA 4NDRB 1GSJA 3QUNA 2J0WA 4I49A 2X2WA 3K4YA 2OGXB 4AB7A 2J4JA 4F6TB 1B7BA 2WXBA 2HMFA 3EK6A 3T7BA 3D40A 4NDOB 4NDPA 2IJ9A 2AP9A 2R8VA 2WE5A 2WE4A 3QUOA 2J4LA 3QVHA 2E9YA 4JZ8A 3D2MA 3ZZIA 3AB4A 2JJ4A 3ZZGA 3EK5A 1YBDA 2J4KA 2BNFA 4JZ7A 3L86A 4NDQA 3L76A 2BRXA 3WWNA 4A7XA 3AB2A 3S6GA 1OH9A 2BNEA 4AXSA 3AAWA 2R98A 2J5VA 4NDPB 3S6HA 4KZTA 3K4OA 2JJXA 2V5HA 2RD5A 2V4YA 3C20A 3KZFA 3C1NA 2VA1A 4NDOA 3LKKA 4USJA 1E19A 3WWMA 2BUFA 2BRIA 3ZZFA 3S6KA 2BMUA 4NDRA 3ZZHA 4Q1TA 2J5TA 2W21A 3K52A 4A7WA 4NDQB 2OGXA
chains in the Genus database with same CATH topology
3LL9A 2JI5A 4F6TA 2BTYA 3D2PA 3D41A 3QVFA 3TVIA 3B8GA 3U6UA 3C1MA 2AKOA 3NWYA 2CDQA 3QURA 1GS5A 3LL5A 1Z9DA 1OHBA 4OLCA 4JZ9A 2A1FA 2BNDA 1OHAA 3K56A 2J0XA 4NDRB 1GSJA 3QUNA 2J0WA 4I49A 2X2WA 3K4YA 2OGXB 4AB7A 2J4JA 4F6TB 1B7BA 2WXBA 2HMFA 3EK6A 3T7BA 3D40A 4NDOB 4NDPA 2IJ9A 2AP9A 2R8VA 2WE5A 2WE4A 3QUOA 2J4LA 3QVHA 2E9YA 4JZ8A 3D2MA 3ZZIA 3AB4A 2JJ4A 3ZZGA 3EK5A 1YBDA 2J4KA 2BNFA 4JZ7A 3L86A 4NDQA 3L76A 2BRXA 3WWNA 4A7XA 3AB2A 3S6GA 1OH9A 2BNEA 4AXSA 3AAWA 2R98A 2J5VA 4NDPB 3S6HA 4KZTA 3K4OA 2JJXA 2V5HA 2RD5A 2V4YA 3C20A 3KZFA 3C1NA 2VA1A 4NDOA 3LKKA 4USJA 1E19A 3WWMA 2BUFA 2BRIA 3ZZFA 3S6KA 2BMUA 4NDRA 3ZZHA 4Q1TA 2J5TA 2W21A 3K52A 4A7WA 4NDQB 2OGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL9 A;  2JI5 A;  4F6T A;  2BTY A;  3D2P A;  3D41 A;  3QVF A;  3TVI A;  3B8G A;  3U6U A;  3C1M A;  2AKO A;  3NWY A;  2CDQ A;  3QUR A;  1GS5 A;  3LL5 A;  1Z9D A;  1OHB A;  4OLC A;  4JZ9 A;  2A1F A;  2BND A;  1OHA A;  3K56 A;  2J0X A;  4NDR B;  1GSJ A;  3QUN A;  2J0W A;  4I49 A;  2X2W A;  3K4Y A;  2OGX B;  4AB7 A;  2J4J A;  4F6T B;  1B7B A;  2WXB A;  2HMF A;  3EK6 A;  3T7B A;  3D40 A;  4NDO B;  4NDP A;  2IJ9 A;  2AP9 A;  2R8V A;  2WE5 A;  2WE4 A;  3QUO A;  2J4L A;  3QVH A;  2E9Y A;  4JZ8 A;  3D2M A;  3ZZI A;  3AB4 A;  2JJ4 A;  3ZZG A;  3EK5 A;  1YBD A;  2J4K A;  2BNF A;  4JZ7 A;  3L86 A;  4NDQ A;  3L76 A;  2BRX A;  3WWN A;  4A7X A;  3AB2 A;  3S6G A;  1OH9 A;  2BNE A;  4AXS A;  3AAW A;  2R98 A;  2J5V A;  4NDP B;  3S6H A;  4KZT A;  3K4O A;  2JJX A;  2V5H A;  2RD5 A;  2V4Y A;  3C20 A;  3KZF A;  3C1N A;  2VA1 A;  4NDO A;  3LKK A;  4USJ A;  1E19 A;  3WWM A;  2BUF A;  2BRI A;  3ZZF A;  3S6K A;  2BMU A;  4NDR A;  3ZZH A;  4Q1T A;  2J5T A;  2W21 A;  3K52 A;  4A7W A;  4NDQ B;  2OGX A; 
#chains in the Genus database with same CATH topology
 3LL9 A;  2JI5 A;  4F6T A;  2BTY A;  3D2P A;  3D41 A;  3QVF A;  3TVI A;  3B8G A;  3U6U A;  3C1M A;  2AKO A;  3NWY A;  2CDQ A;  3QUR A;  1GS5 A;  3LL5 A;  1Z9D A;  1OHB A;  4OLC A;  4JZ9 A;  2A1F A;  2BND A;  1OHA A;  3K56 A;  2J0X A;  4NDR B;  1GSJ A;  3QUN A;  2J0W A;  4I49 A;  2X2W A;  3K4Y A;  2OGX B;  4AB7 A;  2J4J A;  4F6T B;  1B7B A;  2WXB A;  2HMF A;  3EK6 A;  3T7B A;  3D40 A;  4NDO B;  4NDP A;  2IJ9 A;  2AP9 A;  2R8V A;  2WE5 A;  2WE4 A;  3QUO A;  2J4L A;  3QVH A;  2E9Y A;  4JZ8 A;  3D2M A;  3ZZI A;  3AB4 A;  2JJ4 A;  3ZZG A;  3EK5 A;  1YBD A;  2J4K A;  2BNF A;  4JZ7 A;  3L86 A;  4NDQ A;  3L76 A;  2BRX A;  3WWN A;  4A7X A;  3AB2 A;  3S6G A;  1OH9 A;  2BNE A;  4AXS A;  3AAW A;  2R98 A;  2J5V A;  4NDP B;  3S6H A;  4KZT A;  3K4O A;  2JJX A;  2V5H A;  2RD5 A;  2V4Y A;  3C20 A;  3KZF A;  3C1N A;  2VA1 A;  4NDO A;  3LKK A;  4USJ A;  1E19 A;  3WWM A;  2BUF A;  2BRI A;  3ZZF A;  3S6K A;  2BMU A;  4NDR A;  3ZZH A;  4Q1T A;  2J5T A;  2W21 A;  3K52 A;  4A7W A;  4NDQ B;  2OGX A; 
#chains in the Genus database with same CATH homology
 3LL9 A;  2JI5 A;  4F6T A;  2BTY A;  3D2P A;  3D41 A;  3QVF A;  3TVI A;  3B8G A;  3U6U A;  3C1M A;  2AKO A;  3NWY A;  2CDQ A;  3QUR A;  1GS5 A;  3LL5 A;  1Z9D A;  1OHB A;  4OLC A;  4JZ9 A;  2A1F A;  2BND A;  1OHA A;  3K56 A;  2J0X A;  4NDR B;  1GSJ A;  3QUN A;  2J0W A;  4I49 A;  2X2W A;  3K4Y A;  2OGX B;  4AB7 A;  2J4J A;  4F6T B;  1B7B A;  2WXB A;  2HMF A;  3EK6 A;  3T7B A;  3D40 A;  4NDO B;  4NDP A;  2IJ9 A;  2AP9 A;  2R8V A;  2WE5 A;  2WE4 A;  3QUO A;  2J4L A;  3QVH A;  2E9Y A;  4JZ8 A;  3D2M A;  3ZZI A;  3AB4 A;  2JJ4 A;  3ZZG A;  3EK5 A;  1YBD A;  2J4K A;  2BNF A;  4JZ7 A;  3L86 A;  4NDQ A;  3L76 A;  2BRX A;  3WWN A;  4A7X A;  3AB2 A;  3S6G A;  1OH9 A;  2BNE A;  4AXS A;  3AAW A;  2R98 A;  2J5V A;  4NDP B;  3S6H A;  4KZT A;  3K4O A;  2JJX A;  2V5H A;  2RD5 A;  2V4Y A;  3C20 A;  3KZF A;  3C1N A;  2VA1 A;  4NDO A;  3LKK A;  4USJ A;  1E19 A;  3WWM A;  2BUF A;  2BRI A;  3ZZF A;  3S6K A;  2BMU A;  4NDR A;  3ZZH A;  4Q1T A;  2J5T A;  2W21 A;  3K52 A;  4A7W A;  4NDQ B;  2OGX A; 
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