4JZ7A

Carbamate kinase from giardia lamblia bound to amp-pnp
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
316
structure length
285
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
molecule keywords Carbamate kinase
total genus 95
structure length 285
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz7A00
3D41A 1YBDA 3EK5A 3C20A 3EK6A 4NDQB 1OH9A 2WE4A 4JZ7A 2JJXA 1GS5A 2BNFA 2J5TA 4JZ8A 4NDRA 3S6HA 3ZZGA 3ZZHA 3K52A 3WWMA 3C1NA 2CDQA 3AAWA 2IJ9A 4OLCA 3K4YA 2AP9A 2J0WA 3B8GA 3ZZIA 4F6TB 2J4LA 2R98A 1E19A 2HMFA 3QURA 2WXBA 4AXSA 2BRXA 2J4JA 3LL9A 3U6UA 4JZ9A 2AKOA 2JI5A 2VA1A 2BNDA 3LL5A 3AB4A 2WE5A 4A7XA 2J0XA 3L76A 3D2PA 4NDOA 2OGXA 2J4KA 2BUFA 3K56A 3K4OA 2J5VA 3L86A 3QVHA 3ZZFA 4I49A 3S6GA 2A1FA 2BTYA 4F6TA 3QUOA 4AB7A 3C1MA 2R8VA 3D2MA 3AB2A 1OHAA 3NWYA 2E9YA 1Z9DA 4NDRB 2BRIA 2X2WA 2BNEA 3TVIA 2BMUA 4USJA 3QVFA 1GSJA 1B7BA 3QUNA 4NDQA 3LKKA 2JJ4A 2W21A 3D40A 3S6KA 4NDPB 2V4YA 4KZTA 3WWNA 2OGXB 4Q1TA 4A7WA 4NDOB 1OHBA 3T7BA 3KZFA 4NDPA 2RD5A 2V5HA
chains in the Genus database with same CATH superfamily
3D41A 1YBDA 3EK5A 3C20A 3EK6A 4NDQB 1OH9A 2WE4A 4JZ7A 2JJXA 1GS5A 2BNFA 2J5TA 4JZ8A 4NDRA 3S6HA 3ZZGA 3ZZHA 3K52A 3WWMA 3C1NA 2CDQA 3AAWA 2IJ9A 4OLCA 3K4YA 2AP9A 2J0WA 3B8GA 3ZZIA 4F6TB 2J4LA 2R98A 1E19A 2HMFA 3QURA 2WXBA 4AXSA 2BRXA 2J4JA 3LL9A 3U6UA 4JZ9A 2AKOA 2JI5A 2VA1A 2BNDA 3LL5A 3AB4A 2WE5A 4A7XA 2J0XA 3L76A 3D2PA 4NDOA 2OGXA 2J4KA 2BUFA 3K56A 3K4OA 2J5VA 3L86A 3QVHA 3ZZFA 4I49A 3S6GA 2A1FA 2BTYA 4F6TA 3QUOA 4AB7A 3C1MA 2R8VA 3D2MA 3AB2A 1OHAA 3NWYA 2E9YA 1Z9DA 4NDRB 2BRIA 2X2WA 2BNEA 3TVIA 2BMUA 4USJA 3QVFA 1GSJA 1B7BA 3QUNA 4NDQA 3LKKA 2JJ4A 2W21A 3D40A 3S6KA 4NDPB 2V4YA 4KZTA 3WWNA 2OGXB 4Q1TA 4A7WA 4NDOB 1OHBA 3T7BA 3KZFA 4NDPA 2RD5A 2V5HA
chains in the Genus database with same CATH topology
3D41A 1YBDA 3EK5A 3C20A 3EK6A 4NDQB 1OH9A 2WE4A 4JZ7A 2JJXA 1GS5A 2BNFA 2J5TA 4JZ8A 4NDRA 3S6HA 3ZZGA 3ZZHA 3K52A 3WWMA 3C1NA 2CDQA 3AAWA 2IJ9A 4OLCA 3K4YA 2AP9A 2J0WA 3B8GA 3ZZIA 4F6TB 2J4LA 2R98A 1E19A 2HMFA 3QURA 2WXBA 4AXSA 2BRXA 2J4JA 3LL9A 3U6UA 4JZ9A 2AKOA 2JI5A 2VA1A 2BNDA 3LL5A 3AB4A 2WE5A 4A7XA 2J0XA 3L76A 3D2PA 4NDOA 2OGXA 2J4KA 2BUFA 3K56A 3K4OA 2J5VA 3L86A 3QVHA 3ZZFA 4I49A 3S6GA 2A1FA 2BTYA 4F6TA 3QUOA 4AB7A 3C1MA 2R8VA 3D2MA 3AB2A 1OHAA 3NWYA 2E9YA 1Z9DA 4NDRB 2BRIA 2X2WA 2BNEA 3TVIA 2BMUA 4USJA 3QVFA 1GSJA 1B7BA 3QUNA 4NDQA 3LKKA 2JJ4A 2W21A 3D40A 3S6KA 4NDPB 2V4YA 4KZTA 3WWNA 2OGXB 4Q1TA 4A7WA 4NDOB 1OHBA 3T7BA 3KZFA 4NDPA 2RD5A 2V5HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D41 A;  1YBD A;  3EK5 A;  3C20 A;  3EK6 A;  4NDQ B;  1OH9 A;  2WE4 A;  4JZ7 A;  2JJX A;  1GS5 A;  2BNF A;  2J5T A;  4JZ8 A;  4NDR A;  3S6H A;  3ZZG A;  3ZZH A;  3K52 A;  3WWM A;  3C1N A;  2CDQ A;  3AAW A;  2IJ9 A;  4OLC A;  3K4Y A;  2AP9 A;  2J0W A;  3B8G A;  3ZZI A;  4F6T B;  2J4L A;  2R98 A;  1E19 A;  2HMF A;  3QUR A;  2WXB A;  4AXS A;  2BRX A;  2J4J A;  3LL9 A;  3U6U A;  4JZ9 A;  2AKO A;  2JI5 A;  2VA1 A;  2BND A;  3LL5 A;  3AB4 A;  2WE5 A;  4A7X A;  2J0X A;  3L76 A;  3D2P A;  4NDO A;  2OGX A;  2J4K A;  2BUF A;  3K56 A;  3K4O A;  2J5V A;  3L86 A;  3QVH A;  3ZZF A;  4I49 A;  3S6G A;  2A1F A;  2BTY A;  4F6T A;  3QUO A;  4AB7 A;  3C1M A;  2R8V A;  3D2M A;  3AB2 A;  1OHA A;  3NWY A;  2E9Y A;  1Z9D A;  4NDR B;  2BRI A;  2X2W A;  2BNE A;  3TVI A;  2BMU A;  4USJ A;  3QVF A;  1GSJ A;  1B7B A;  3QUN A;  4NDQ A;  3LKK A;  2JJ4 A;  2W21 A;  3D40 A;  3S6K A;  4NDP B;  2V4Y A;  4KZT A;  3WWN A;  2OGX B;  4Q1T A;  4A7W A;  4NDO B;  1OHB A;  3T7B A;  3KZF A;  4NDP A;  2RD5 A;  2V5H A; 
#chains in the Genus database with same CATH topology
 3D41 A;  1YBD A;  3EK5 A;  3C20 A;  3EK6 A;  4NDQ B;  1OH9 A;  2WE4 A;  4JZ7 A;  2JJX A;  1GS5 A;  2BNF A;  2J5T A;  4JZ8 A;  4NDR A;  3S6H A;  3ZZG A;  3ZZH A;  3K52 A;  3WWM A;  3C1N A;  2CDQ A;  3AAW A;  2IJ9 A;  4OLC A;  3K4Y A;  2AP9 A;  2J0W A;  3B8G A;  3ZZI A;  4F6T B;  2J4L A;  2R98 A;  1E19 A;  2HMF A;  3QUR A;  2WXB A;  4AXS A;  2BRX A;  2J4J A;  3LL9 A;  3U6U A;  4JZ9 A;  2AKO A;  2JI5 A;  2VA1 A;  2BND A;  3LL5 A;  3AB4 A;  2WE5 A;  4A7X A;  2J0X A;  3L76 A;  3D2P A;  4NDO A;  2OGX A;  2J4K A;  2BUF A;  3K56 A;  3K4O A;  2J5V A;  3L86 A;  3QVH A;  3ZZF A;  4I49 A;  3S6G A;  2A1F A;  2BTY A;  4F6T A;  3QUO A;  4AB7 A;  3C1M A;  2R8V A;  3D2M A;  3AB2 A;  1OHA A;  3NWY A;  2E9Y A;  1Z9D A;  4NDR B;  2BRI A;  2X2W A;  2BNE A;  3TVI A;  2BMU A;  4USJ A;  3QVF A;  1GSJ A;  1B7B A;  3QUN A;  4NDQ A;  3LKK A;  2JJ4 A;  2W21 A;  3D40 A;  3S6K A;  4NDP B;  2V4Y A;  4KZT A;  3WWN A;  2OGX B;  4Q1T A;  4A7W A;  4NDO B;  1OHB A;  3T7B A;  3KZF A;  4NDP A;  2RD5 A;  2V5H A; 
#chains in the Genus database with same CATH homology
 3D41 A;  1YBD A;  3EK5 A;  3C20 A;  3EK6 A;  4NDQ B;  1OH9 A;  2WE4 A;  4JZ7 A;  2JJX A;  1GS5 A;  2BNF A;  2J5T A;  4JZ8 A;  4NDR A;  3S6H A;  3ZZG A;  3ZZH A;  3K52 A;  3WWM A;  3C1N A;  2CDQ A;  3AAW A;  2IJ9 A;  4OLC A;  3K4Y A;  2AP9 A;  2J0W A;  3B8G A;  3ZZI A;  4F6T B;  2J4L A;  2R98 A;  1E19 A;  2HMF A;  3QUR A;  2WXB A;  4AXS A;  2BRX A;  2J4J A;  3LL9 A;  3U6U A;  4JZ9 A;  2AKO A;  2JI5 A;  2VA1 A;  2BND A;  3LL5 A;  3AB4 A;  2WE5 A;  4A7X A;  2J0X A;  3L76 A;  3D2P A;  4NDO A;  2OGX A;  2J4K A;  2BUF A;  3K56 A;  3K4O A;  2J5V A;  3L86 A;  3QVH A;  3ZZF A;  4I49 A;  3S6G A;  2A1F A;  2BTY A;  4F6T A;  3QUO A;  4AB7 A;  3C1M A;  2R8V A;  3D2M A;  3AB2 A;  1OHA A;  3NWY A;  2E9Y A;  1Z9D A;  4NDR B;  2BRI A;  2X2W A;  2BNE A;  3TVI A;  2BMU A;  4USJ A;  3QVF A;  1GSJ A;  1B7B A;  3QUN A;  4NDQ A;  3LKK A;  2JJ4 A;  2W21 A;  3D40 A;  3S6K A;  4NDP B;  2V4Y A;  4KZT A;  3WWN A;  2OGX B;  4Q1T A;  4A7W A;  4NDO B;  1OHB A;  3T7B A;  3KZF A;  4NDP A;  2RD5 A;  2V5H A; 
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