4JZ7A

Carbamate kinase from giardia lamblia bound to amp-pnp
Total Genus 95
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
316
structure length
285
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 95
structure length 285
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz7A00
3TVIA 2JJ4A 2BNDA 2BRXA 2JI5A 2CDQA 2X2WA 4NDRA 4NDPA 2IJ9A 2WE5A 4NDOA 3C1MA 3C1NA 2BMUA 3K56A 3D2MA 2A1FA 4JZ7A 4USJA 2AP9A 3K4YA 4NDRB 2BNEA 2OGXA 3EK6A 4NDPB 3LL5A 2W21A 2R98A 4NDOB 2BNFA 2BRIA 3U6UA 3K52A 4NDQB 2WXBA 4F6TA 4KZTA 2J0WA 4A7WA 3S6GA 2E9YA 3QUOA 4AXSA 3QUNA 2BTYA 3NWYA 4JZ9A 4Q1TA 3WWNA 2VA1A 3LL9A 3S6HA 3ZZGA 2BUFA 3EK5A 2RD5A 2J4JA 2JJXA 4OLCA 4AB7A 3K4OA 2V5HA 1OH9A 1Z9DA 3AAWA 2J5VA 3D2PA 3QURA 1E19A 3B8GA 3LKKA 3T7BA 3QVFA 3AB4A 3ZZFA 2V4YA 3L76A 1YBDA 1B7BA 1GS5A 3D40A 2J0XA 2OGXB 4A7XA 2HMFA 3WWMA 2AKOA 2WE4A 3KZFA 4JZ8A 2R8VA 3QVHA 4F6TB 4NDQA 3AB2A 3ZZHA 3ZZIA 2J4LA 3L86A 1GSJA 4I49A 1OHAA 3D41A 2J5TA 1OHBA 2J4KA 3S6KA 3C20A
chains in the Genus database with same CATH superfamily
3TVIA 2JJ4A 2BNDA 2BRXA 2JI5A 2CDQA 2X2WA 4NDRA 4NDPA 2IJ9A 2WE5A 4NDOA 3C1MA 3C1NA 2BMUA 3K56A 3D2MA 2A1FA 4JZ7A 4USJA 2AP9A 3K4YA 4NDRB 2BNEA 2OGXA 3EK6A 4NDPB 3LL5A 2W21A 2R98A 4NDOB 2BNFA 2BRIA 3U6UA 3K52A 4NDQB 2WXBA 4F6TA 4KZTA 2J0WA 4A7WA 3S6GA 2E9YA 3QUOA 4AXSA 3QUNA 2BTYA 3NWYA 4JZ9A 4Q1TA 3WWNA 2VA1A 3LL9A 3S6HA 3ZZGA 2BUFA 3EK5A 2RD5A 2J4JA 2JJXA 4OLCA 4AB7A 3K4OA 2V5HA 1OH9A 1Z9DA 3AAWA 2J5VA 3D2PA 3QURA 1E19A 3B8GA 3LKKA 3T7BA 3QVFA 3AB4A 3ZZFA 2V4YA 3L76A 1YBDA 1B7BA 1GS5A 3D40A 2J0XA 2OGXB 4A7XA 2HMFA 3WWMA 2AKOA 2WE4A 3KZFA 4JZ8A 2R8VA 3QVHA 4F6TB 4NDQA 3AB2A 3ZZHA 3ZZIA 2J4LA 3L86A 1GSJA 4I49A 1OHAA 3D41A 2J5TA 1OHBA 2J4KA 3S6KA 3C20A
chains in the Genus database with same CATH topology
3TVIA 2JJ4A 2BNDA 2BRXA 2JI5A 2CDQA 2X2WA 4NDRA 4NDPA 2IJ9A 2WE5A 4NDOA 3C1MA 3C1NA 2BMUA 3K56A 3D2MA 2A1FA 4JZ7A 4USJA 2AP9A 3K4YA 4NDRB 2BNEA 2OGXA 3EK6A 4NDPB 3LL5A 2W21A 2R98A 4NDOB 2BNFA 2BRIA 3U6UA 3K52A 4NDQB 2WXBA 4F6TA 4KZTA 2J0WA 4A7WA 3S6GA 2E9YA 3QUOA 4AXSA 3QUNA 2BTYA 3NWYA 4JZ9A 4Q1TA 3WWNA 2VA1A 3LL9A 3S6HA 3ZZGA 2BUFA 3EK5A 2RD5A 2J4JA 2JJXA 4OLCA 4AB7A 3K4OA 2V5HA 1OH9A 1Z9DA 3AAWA 2J5VA 3D2PA 3QURA 1E19A 3B8GA 3LKKA 3T7BA 3QVFA 3AB4A 3ZZFA 2V4YA 3L76A 1YBDA 1B7BA 1GS5A 3D40A 2J0XA 2OGXB 4A7XA 2HMFA 3WWMA 2AKOA 2WE4A 3KZFA 4JZ8A 2R8VA 3QVHA 4F6TB 4NDQA 3AB2A 3ZZHA 3ZZIA 2J4LA 3L86A 1GSJA 4I49A 1OHAA 3D41A 2J5TA 1OHBA 2J4KA 3S6KA 3C20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TVI A;  2JJ4 A;  2BND A;  2BRX A;  2JI5 A;  2CDQ A;  2X2W A;  4NDR A;  4NDP A;  2IJ9 A;  2WE5 A;  4NDO A;  3C1M A;  3C1N A;  2BMU A;  3K56 A;  3D2M A;  2A1F A;  4JZ7 A;  4USJ A;  2AP9 A;  3K4Y A;  4NDR B;  2BNE A;  2OGX A;  3EK6 A;  4NDP B;  3LL5 A;  2W21 A;  2R98 A;  4NDO B;  2BNF A;  2BRI A;  3U6U A;  3K52 A;  4NDQ B;  2WXB A;  4F6T A;  4KZT A;  2J0W A;  4A7W A;  3S6G A;  2E9Y A;  3QUO A;  4AXS A;  3QUN A;  2BTY A;  3NWY A;  4JZ9 A;  4Q1T A;  3WWN A;  2VA1 A;  3LL9 A;  3S6H A;  3ZZG A;  2BUF A;  3EK5 A;  2RD5 A;  2J4J A;  2JJX A;  4OLC A;  4AB7 A;  3K4O A;  2V5H A;  1OH9 A;  1Z9D A;  3AAW A;  2J5V A;  3D2P A;  3QUR A;  1E19 A;  3B8G A;  3LKK A;  3T7B A;  3QVF A;  3AB4 A;  3ZZF A;  2V4Y A;  3L76 A;  1YBD A;  1B7B A;  1GS5 A;  3D40 A;  2J0X A;  2OGX B;  4A7X A;  2HMF A;  3WWM A;  2AKO A;  2WE4 A;  3KZF A;  4JZ8 A;  2R8V A;  3QVH A;  4F6T B;  4NDQ A;  3AB2 A;  3ZZH A;  3ZZI A;  2J4L A;  3L86 A;  1GSJ A;  4I49 A;  1OHA A;  3D41 A;  2J5T A;  1OHB A;  2J4K A;  3S6K A;  3C20 A; 
#chains in the Genus database with same CATH topology
 3TVI A;  2JJ4 A;  2BND A;  2BRX A;  2JI5 A;  2CDQ A;  2X2W A;  4NDR A;  4NDP A;  2IJ9 A;  2WE5 A;  4NDO A;  3C1M A;  3C1N A;  2BMU A;  3K56 A;  3D2M A;  2A1F A;  4JZ7 A;  4USJ A;  2AP9 A;  3K4Y A;  4NDR B;  2BNE A;  2OGX A;  3EK6 A;  4NDP B;  3LL5 A;  2W21 A;  2R98 A;  4NDO B;  2BNF A;  2BRI A;  3U6U A;  3K52 A;  4NDQ B;  2WXB A;  4F6T A;  4KZT A;  2J0W A;  4A7W A;  3S6G A;  2E9Y A;  3QUO A;  4AXS A;  3QUN A;  2BTY A;  3NWY A;  4JZ9 A;  4Q1T A;  3WWN A;  2VA1 A;  3LL9 A;  3S6H A;  3ZZG A;  2BUF A;  3EK5 A;  2RD5 A;  2J4J A;  2JJX A;  4OLC A;  4AB7 A;  3K4O A;  2V5H A;  1OH9 A;  1Z9D A;  3AAW A;  2J5V A;  3D2P A;  3QUR A;  1E19 A;  3B8G A;  3LKK A;  3T7B A;  3QVF A;  3AB4 A;  3ZZF A;  2V4Y A;  3L76 A;  1YBD A;  1B7B A;  1GS5 A;  3D40 A;  2J0X A;  2OGX B;  4A7X A;  2HMF A;  3WWM A;  2AKO A;  2WE4 A;  3KZF A;  4JZ8 A;  2R8V A;  3QVH A;  4F6T B;  4NDQ A;  3AB2 A;  3ZZH A;  3ZZI A;  2J4L A;  3L86 A;  1GSJ A;  4I49 A;  1OHA A;  3D41 A;  2J5T A;  1OHB A;  2J4K A;  3S6K A;  3C20 A; 
#chains in the Genus database with same CATH homology
 3TVI A;  2JJ4 A;  2BND A;  2BRX A;  2JI5 A;  2CDQ A;  2X2W A;  4NDR A;  4NDP A;  2IJ9 A;  2WE5 A;  4NDO A;  3C1M A;  3C1N A;  2BMU A;  3K56 A;  3D2M A;  2A1F A;  4JZ7 A;  4USJ A;  2AP9 A;  3K4Y A;  4NDR B;  2BNE A;  2OGX A;  3EK6 A;  4NDP B;  3LL5 A;  2W21 A;  2R98 A;  4NDO B;  2BNF A;  2BRI A;  3U6U A;  3K52 A;  4NDQ B;  2WXB A;  4F6T A;  4KZT A;  2J0W A;  4A7W A;  3S6G A;  2E9Y A;  3QUO A;  4AXS A;  3QUN A;  2BTY A;  3NWY A;  4JZ9 A;  4Q1T A;  3WWN A;  2VA1 A;  3LL9 A;  3S6H A;  3ZZG A;  2BUF A;  3EK5 A;  2RD5 A;  2J4J A;  2JJX A;  4OLC A;  4AB7 A;  3K4O A;  2V5H A;  1OH9 A;  1Z9D A;  3AAW A;  2J5V A;  3D2P A;  3QUR A;  1E19 A;  3B8G A;  3LKK A;  3T7B A;  3QVF A;  3AB4 A;  3ZZF A;  2V4Y A;  3L76 A;  1YBD A;  1B7B A;  1GS5 A;  3D40 A;  2J0X A;  2OGX B;  4A7X A;  2HMF A;  3WWM A;  2AKO A;  2WE4 A;  3KZF A;  4JZ8 A;  2R8V A;  3QVH A;  4F6T B;  4NDQ A;  3AB2 A;  3ZZH A;  3ZZI A;  2J4L A;  3L86 A;  1GSJ A;  4I49 A;  1OHA A;  3D41 A;  2J5T A;  1OHB A;  2J4K A;  3S6K A;  3C20 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...