2J4LA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with utp to 2.8 angstrom resolution
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
226
structure length
214
Chain Sequence
b'MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKIELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 73
structure length 214
sequence length 226
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4lA00
2BNFA 3QVFA 3ZZGA 3S6KA 3AAWA 3K52A 3ZZIA 3C1NA 4NDRA 4AB7A 2CDQA 3EK6A 2X2WA 2WE4A 4A7WA 2AKOA 2AP9A 2BRIA 2JJ4A 3NWYA 3B8GA 4Q1TA 4NDPA 2J0WA 2WXBA 3AB2A 3QVHA 3T7BA 4JZ8A 3ZZHA 3ZZFA 4I49A 3S6HA 2W21A 3QURA 3U6UA 4NDOA 2E9YA 3D2MA 1OH9A 3LL5A 3K4OA 3D40A 1E19A 4AXSA 4KZTA 2J4JA 3LKKA 2OGXA 2BMUA 4JZ9A 4NDRB 3KZFA 2BNDA 3D41A 2IJ9A 3LL9A 2JI5A 4F6TA 2JJXA 2BNEA 2J4LA 2J5TA 4NDQA 2R98A 2V4YA 3QUOA 4NDPB 3WWMA 2J0XA 2J5VA 2RD5A 1Z9DA 3S6GA 1OHAA 2A1FA 2BUFA 3QUNA 1OHBA 3K56A 4JZ7A 1GS5A 4NDOB 4OLCA 3L76A 3EK5A 3D2PA 2J4KA 2OGXB 3K4YA 2V5HA 2BTYA 2VA1A 1YBDA 4A7XA 3WWNA 3TVIA 2WE5A 4F6TB 2HMFA 3L86A 2R8VA 2BRXA 3C20A 1GSJA 4NDQB 4USJA 1B7BA 3AB4A 3C1MA
chains in the Genus database with same CATH superfamily
2BNFA 3QVFA 3ZZGA 3S6KA 3AAWA 3K52A 3ZZIA 3C1NA 4NDRA 4AB7A 2CDQA 3EK6A 2X2WA 2WE4A 4A7WA 2AKOA 2AP9A 2BRIA 2JJ4A 3NWYA 3B8GA 4Q1TA 4NDPA 2J0WA 2WXBA 3AB2A 3QVHA 3T7BA 4JZ8A 3ZZHA 3ZZFA 4I49A 3S6HA 2W21A 3QURA 3U6UA 4NDOA 2E9YA 3D2MA 1OH9A 3LL5A 3K4OA 3D40A 1E19A 4AXSA 4KZTA 2J4JA 3LKKA 2OGXA 2BMUA 4JZ9A 4NDRB 3KZFA 2BNDA 3D41A 2IJ9A 3LL9A 2JI5A 4F6TA 2JJXA 2BNEA 2J4LA 2J5TA 4NDQA 2R98A 2V4YA 3QUOA 4NDPB 3WWMA 2J0XA 2J5VA 2RD5A 1Z9DA 3S6GA 1OHAA 2A1FA 2BUFA 3QUNA 1OHBA 3K56A 4JZ7A 1GS5A 4NDOB 4OLCA 3L76A 3EK5A 3D2PA 2J4KA 2OGXB 3K4YA 2V5HA 2BTYA 2VA1A 1YBDA 4A7XA 3WWNA 3TVIA 2WE5A 4F6TB 2HMFA 3L86A 2R8VA 2BRXA 3C20A 1GSJA 4NDQB 4USJA 1B7BA 3AB4A 3C1MA
chains in the Genus database with same CATH topology
2BNFA 3QVFA 3ZZGA 3S6KA 3AAWA 3K52A 3ZZIA 3C1NA 4NDRA 4AB7A 2CDQA 3EK6A 2X2WA 2WE4A 4A7WA 2AKOA 2AP9A 2BRIA 2JJ4A 3NWYA 3B8GA 4Q1TA 4NDPA 2J0WA 2WXBA 3AB2A 3QVHA 3T7BA 4JZ8A 3ZZHA 3ZZFA 4I49A 3S6HA 2W21A 3QURA 3U6UA 4NDOA 2E9YA 3D2MA 1OH9A 3LL5A 3K4OA 3D40A 1E19A 4AXSA 4KZTA 2J4JA 3LKKA 2OGXA 2BMUA 4JZ9A 4NDRB 3KZFA 2BNDA 3D41A 2IJ9A 3LL9A 2JI5A 4F6TA 2JJXA 2BNEA 2J4LA 2J5TA 4NDQA 2R98A 2V4YA 3QUOA 4NDPB 3WWMA 2J0XA 2J5VA 2RD5A 1Z9DA 3S6GA 1OHAA 2A1FA 2BUFA 3QUNA 1OHBA 3K56A 4JZ7A 1GS5A 4NDOB 4OLCA 3L76A 3EK5A 3D2PA 2J4KA 2OGXB 3K4YA 2V5HA 2BTYA 2VA1A 1YBDA 4A7XA 3WWNA 3TVIA 2WE5A 4F6TB 2HMFA 3L86A 2R8VA 2BRXA 3C20A 1GSJA 4NDQB 4USJA 1B7BA 3AB4A 3C1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BNF A;  3QVF A;  3ZZG A;  3S6K A;  3AAW A;  3K52 A;  3ZZI A;  3C1N A;  4NDR A;  4AB7 A;  2CDQ A;  3EK6 A;  2X2W A;  2WE4 A;  4A7W A;  2AKO A;  2AP9 A;  2BRI A;  2JJ4 A;  3NWY A;  3B8G A;  4Q1T A;  4NDP A;  2J0W A;  2WXB A;  3AB2 A;  3QVH A;  3T7B A;  4JZ8 A;  3ZZH A;  3ZZF A;  4I49 A;  3S6H A;  2W21 A;  3QUR A;  3U6U A;  4NDO A;  2E9Y A;  3D2M A;  1OH9 A;  3LL5 A;  3K4O A;  3D40 A;  1E19 A;  4AXS A;  4KZT A;  2J4J A;  3LKK A;  2OGX A;  2BMU A;  4JZ9 A;  4NDR B;  3KZF A;  2BND A;  3D41 A;  2IJ9 A;  3LL9 A;  2JI5 A;  4F6T A;  2JJX A;  2BNE A;  2J4L A;  2J5T A;  4NDQ A;  2R98 A;  2V4Y A;  3QUO A;  4NDP B;  3WWM A;  2J0X A;  2J5V A;  2RD5 A;  1Z9D A;  3S6G A;  1OHA A;  2A1F A;  2BUF A;  3QUN A;  1OHB A;  3K56 A;  4JZ7 A;  1GS5 A;  4NDO B;  4OLC A;  3L76 A;  3EK5 A;  3D2P A;  2J4K A;  2OGX B;  3K4Y A;  2V5H A;  2BTY A;  2VA1 A;  1YBD A;  4A7X A;  3WWN A;  3TVI A;  2WE5 A;  4F6T B;  2HMF A;  3L86 A;  2R8V A;  2BRX A;  3C20 A;  1GSJ A;  4NDQ B;  4USJ A;  1B7B A;  3AB4 A;  3C1M A; 
#chains in the Genus database with same CATH topology
 2BNF A;  3QVF A;  3ZZG A;  3S6K A;  3AAW A;  3K52 A;  3ZZI A;  3C1N A;  4NDR A;  4AB7 A;  2CDQ A;  3EK6 A;  2X2W A;  2WE4 A;  4A7W A;  2AKO A;  2AP9 A;  2BRI A;  2JJ4 A;  3NWY A;  3B8G A;  4Q1T A;  4NDP A;  2J0W A;  2WXB A;  3AB2 A;  3QVH A;  3T7B A;  4JZ8 A;  3ZZH A;  3ZZF A;  4I49 A;  3S6H A;  2W21 A;  3QUR A;  3U6U A;  4NDO A;  2E9Y A;  3D2M A;  1OH9 A;  3LL5 A;  3K4O A;  3D40 A;  1E19 A;  4AXS A;  4KZT A;  2J4J A;  3LKK A;  2OGX A;  2BMU A;  4JZ9 A;  4NDR B;  3KZF A;  2BND A;  3D41 A;  2IJ9 A;  3LL9 A;  2JI5 A;  4F6T A;  2JJX A;  2BNE A;  2J4L A;  2J5T A;  4NDQ A;  2R98 A;  2V4Y A;  3QUO A;  4NDP B;  3WWM A;  2J0X A;  2J5V A;  2RD5 A;  1Z9D A;  3S6G A;  1OHA A;  2A1F A;  2BUF A;  3QUN A;  1OHB A;  3K56 A;  4JZ7 A;  1GS5 A;  4NDO B;  4OLC A;  3L76 A;  3EK5 A;  3D2P A;  2J4K A;  2OGX B;  3K4Y A;  2V5H A;  2BTY A;  2VA1 A;  1YBD A;  4A7X A;  3WWN A;  3TVI A;  2WE5 A;  4F6T B;  2HMF A;  3L86 A;  2R8V A;  2BRX A;  3C20 A;  1GSJ A;  4NDQ B;  4USJ A;  1B7B A;  3AB4 A;  3C1M A; 
#chains in the Genus database with same CATH homology
 2BNF A;  3QVF A;  3ZZG A;  3S6K A;  3AAW A;  3K52 A;  3ZZI A;  3C1N A;  4NDR A;  4AB7 A;  2CDQ A;  3EK6 A;  2X2W A;  2WE4 A;  4A7W A;  2AKO A;  2AP9 A;  2BRI A;  2JJ4 A;  3NWY A;  3B8G A;  4Q1T A;  4NDP A;  2J0W A;  2WXB A;  3AB2 A;  3QVH A;  3T7B A;  4JZ8 A;  3ZZH A;  3ZZF A;  4I49 A;  3S6H A;  2W21 A;  3QUR A;  3U6U A;  4NDO A;  2E9Y A;  3D2M A;  1OH9 A;  3LL5 A;  3K4O A;  3D40 A;  1E19 A;  4AXS A;  4KZT A;  2J4J A;  3LKK A;  2OGX A;  2BMU A;  4JZ9 A;  4NDR B;  3KZF A;  2BND A;  3D41 A;  2IJ9 A;  3LL9 A;  2JI5 A;  4F6T A;  2JJX A;  2BNE A;  2J4L A;  2J5T A;  4NDQ A;  2R98 A;  2V4Y A;  3QUO A;  4NDP B;  3WWM A;  2J0X A;  2J5V A;  2RD5 A;  1Z9D A;  3S6G A;  1OHA A;  2A1F A;  2BUF A;  3QUN A;  1OHB A;  3K56 A;  4JZ7 A;  1GS5 A;  4NDO B;  4OLC A;  3L76 A;  3EK5 A;  3D2P A;  2J4K A;  2OGX B;  3K4Y A;  2V5H A;  2BTY A;  2VA1 A;  1YBD A;  4A7X A;  3WWN A;  3TVI A;  2WE5 A;  4F6T B;  2HMF A;  3L86 A;  2R8V A;  2BRX A;  3C20 A;  1GSJ A;  4NDQ B;  4USJ A;  1B7B A;  3AB4 A;  3C1M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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