2J4LA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with utp to 2.8 angstrom resolution
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
226
structure length
214
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKIELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 73
structure length 214
sequence length 226
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4lA00
2J5VA 2W21A 4Q1TA 4NDQA 3K4OA 4F6TA 2BMUA 2X2WA 2AP9A 2BRIA 4AXSA 2BUFA 3NWYA 3S6KA 4NDPA 2J0WA 2BRXA 3QVFA 3QUNA 2BNDA 3S6HA 2WXBA 4NDOB 2WE4A 2A1FA 4KZTA 3D40A 2JJXA 3AB4A 3K52A 2OGXB 4JZ7A 3L76A 3K56A 3B8GA 3LL9A 3LKKA 3WWMA 4AB7A 3EK6A 2RD5A 1Z9DA 3C1MA 3L86A 4NDQB 3D2PA 4F6TB 3K4YA 4JZ8A 3C20A 2BNEA 2V4YA 4NDPB 2R98A 3WWNA 4NDRA 3S6GA 3EK5A 1B7BA 1OHBA 2BTYA 3ZZIA 3AAWA 3QURA 2WE5A 3ZZHA 2AKOA 2J4JA 3C1NA 3TVIA 1YBDA 3D2MA 1GS5A 4USJA 2JJ4A 1E19A 4OLCA 1OHAA 3U6UA 2R8VA 2HMFA 1GSJA 4NDOA 2JI5A 3ZZGA 3T7BA 4I49A 2V5HA 3QUOA 2J5TA 4A7XA 2OGXA 4A7WA 3QVHA 2IJ9A 3AB2A 3KZFA 1OH9A 2VA1A 4JZ9A 4NDRB 2J0XA 2J4KA 2J4LA 2E9YA 3ZZFA 3D41A 2CDQA 3LL5A 2BNFA
chains in the Genus database with same CATH superfamily
2J5VA 2W21A 4Q1TA 4NDQA 3K4OA 4F6TA 2BMUA 2X2WA 2AP9A 2BRIA 4AXSA 2BUFA 3NWYA 3S6KA 4NDPA 2J0WA 2BRXA 3QVFA 3QUNA 2BNDA 3S6HA 2WXBA 4NDOB 2WE4A 2A1FA 4KZTA 3D40A 2JJXA 3AB4A 3K52A 2OGXB 4JZ7A 3L76A 3K56A 3B8GA 3LL9A 3LKKA 3WWMA 4AB7A 3EK6A 2RD5A 1Z9DA 3C1MA 3L86A 4NDQB 3D2PA 4F6TB 3K4YA 4JZ8A 3C20A 2BNEA 2V4YA 4NDPB 2R98A 3WWNA 4NDRA 3S6GA 3EK5A 1B7BA 1OHBA 2BTYA 3ZZIA 3AAWA 3QURA 2WE5A 3ZZHA 2AKOA 2J4JA 3C1NA 3TVIA 1YBDA 3D2MA 1GS5A 4USJA 2JJ4A 1E19A 4OLCA 1OHAA 3U6UA 2R8VA 2HMFA 1GSJA 4NDOA 2JI5A 3ZZGA 3T7BA 4I49A 2V5HA 3QUOA 2J5TA 4A7XA 2OGXA 4A7WA 3QVHA 2IJ9A 3AB2A 3KZFA 1OH9A 2VA1A 4JZ9A 4NDRB 2J0XA 2J4KA 2J4LA 2E9YA 3ZZFA 3D41A 2CDQA 3LL5A 2BNFA
chains in the Genus database with same CATH topology
2J5VA 2W21A 4Q1TA 4NDQA 3K4OA 4F6TA 2BMUA 2X2WA 2AP9A 2BRIA 4AXSA 2BUFA 3NWYA 3S6KA 4NDPA 2J0WA 2BRXA 3QVFA 3QUNA 2BNDA 3S6HA 2WXBA 4NDOB 2WE4A 2A1FA 4KZTA 3D40A 2JJXA 3AB4A 3K52A 2OGXB 4JZ7A 3L76A 3K56A 3B8GA 3LL9A 3LKKA 3WWMA 4AB7A 3EK6A 2RD5A 1Z9DA 3C1MA 3L86A 4NDQB 3D2PA 4F6TB 3K4YA 4JZ8A 3C20A 2BNEA 2V4YA 4NDPB 2R98A 3WWNA 4NDRA 3S6GA 3EK5A 1B7BA 1OHBA 2BTYA 3ZZIA 3AAWA 3QURA 2WE5A 3ZZHA 2AKOA 2J4JA 3C1NA 3TVIA 1YBDA 3D2MA 1GS5A 4USJA 2JJ4A 1E19A 4OLCA 1OHAA 3U6UA 2R8VA 2HMFA 1GSJA 4NDOA 2JI5A 3ZZGA 3T7BA 4I49A 2V5HA 3QUOA 2J5TA 4A7XA 2OGXA 4A7WA 3QVHA 2IJ9A 3AB2A 3KZFA 1OH9A 2VA1A 4JZ9A 4NDRB 2J0XA 2J4KA 2J4LA 2E9YA 3ZZFA 3D41A 2CDQA 3LL5A 2BNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J5V A;  2W21 A;  4Q1T A;  4NDQ A;  3K4O A;  4F6T A;  2BMU A;  2X2W A;  2AP9 A;  2BRI A;  4AXS A;  2BUF A;  3NWY A;  3S6K A;  4NDP A;  2J0W A;  2BRX A;  3QVF A;  3QUN A;  2BND A;  3S6H A;  2WXB A;  4NDO B;  2WE4 A;  2A1F A;  4KZT A;  3D40 A;  2JJX A;  3AB4 A;  3K52 A;  2OGX B;  4JZ7 A;  3L76 A;  3K56 A;  3B8G A;  3LL9 A;  3LKK A;  3WWM A;  4AB7 A;  3EK6 A;  2RD5 A;  1Z9D A;  3C1M A;  3L86 A;  4NDQ B;  3D2P A;  4F6T B;  3K4Y A;  4JZ8 A;  3C20 A;  2BNE A;  2V4Y A;  4NDP B;  2R98 A;  3WWN A;  4NDR A;  3S6G A;  3EK5 A;  1B7B A;  1OHB A;  2BTY A;  3ZZI A;  3AAW A;  3QUR A;  2WE5 A;  3ZZH A;  2AKO A;  2J4J A;  3C1N A;  3TVI A;  1YBD A;  3D2M A;  1GS5 A;  4USJ A;  2JJ4 A;  1E19 A;  4OLC A;  1OHA A;  3U6U A;  2R8V A;  2HMF A;  1GSJ A;  4NDO A;  2JI5 A;  3ZZG A;  3T7B A;  4I49 A;  2V5H A;  3QUO A;  2J5T A;  4A7X A;  2OGX A;  4A7W A;  3QVH A;  2IJ9 A;  3AB2 A;  3KZF A;  1OH9 A;  2VA1 A;  4JZ9 A;  4NDR B;  2J0X A;  2J4K A;  2J4L A;  2E9Y A;  3ZZF A;  3D41 A;  2CDQ A;  3LL5 A;  2BNF A; 
#chains in the Genus database with same CATH topology
 2J5V A;  2W21 A;  4Q1T A;  4NDQ A;  3K4O A;  4F6T A;  2BMU A;  2X2W A;  2AP9 A;  2BRI A;  4AXS A;  2BUF A;  3NWY A;  3S6K A;  4NDP A;  2J0W A;  2BRX A;  3QVF A;  3QUN A;  2BND A;  3S6H A;  2WXB A;  4NDO B;  2WE4 A;  2A1F A;  4KZT A;  3D40 A;  2JJX A;  3AB4 A;  3K52 A;  2OGX B;  4JZ7 A;  3L76 A;  3K56 A;  3B8G A;  3LL9 A;  3LKK A;  3WWM A;  4AB7 A;  3EK6 A;  2RD5 A;  1Z9D A;  3C1M A;  3L86 A;  4NDQ B;  3D2P A;  4F6T B;  3K4Y A;  4JZ8 A;  3C20 A;  2BNE A;  2V4Y A;  4NDP B;  2R98 A;  3WWN A;  4NDR A;  3S6G A;  3EK5 A;  1B7B A;  1OHB A;  2BTY A;  3ZZI A;  3AAW A;  3QUR A;  2WE5 A;  3ZZH A;  2AKO A;  2J4J A;  3C1N A;  3TVI A;  1YBD A;  3D2M A;  1GS5 A;  4USJ A;  2JJ4 A;  1E19 A;  4OLC A;  1OHA A;  3U6U A;  2R8V A;  2HMF A;  1GSJ A;  4NDO A;  2JI5 A;  3ZZG A;  3T7B A;  4I49 A;  2V5H A;  3QUO A;  2J5T A;  4A7X A;  2OGX A;  4A7W A;  3QVH A;  2IJ9 A;  3AB2 A;  3KZF A;  1OH9 A;  2VA1 A;  4JZ9 A;  4NDR B;  2J0X A;  2J4K A;  2J4L A;  2E9Y A;  3ZZF A;  3D41 A;  2CDQ A;  3LL5 A;  2BNF A; 
#chains in the Genus database with same CATH homology
 2J5V A;  2W21 A;  4Q1T A;  4NDQ A;  3K4O A;  4F6T A;  2BMU A;  2X2W A;  2AP9 A;  2BRI A;  4AXS A;  2BUF A;  3NWY A;  3S6K A;  4NDP A;  2J0W A;  2BRX A;  3QVF A;  3QUN A;  2BND A;  3S6H A;  2WXB A;  4NDO B;  2WE4 A;  2A1F A;  4KZT A;  3D40 A;  2JJX A;  3AB4 A;  3K52 A;  2OGX B;  4JZ7 A;  3L76 A;  3K56 A;  3B8G A;  3LL9 A;  3LKK A;  3WWM A;  4AB7 A;  3EK6 A;  2RD5 A;  1Z9D A;  3C1M A;  3L86 A;  4NDQ B;  3D2P A;  4F6T B;  3K4Y A;  4JZ8 A;  3C20 A;  2BNE A;  2V4Y A;  4NDP B;  2R98 A;  3WWN A;  4NDR A;  3S6G A;  3EK5 A;  1B7B A;  1OHB A;  2BTY A;  3ZZI A;  3AAW A;  3QUR A;  2WE5 A;  3ZZH A;  2AKO A;  2J4J A;  3C1N A;  3TVI A;  1YBD A;  3D2M A;  1GS5 A;  4USJ A;  2JJ4 A;  1E19 A;  4OLC A;  1OHA A;  3U6U A;  2R8V A;  2HMF A;  1GSJ A;  4NDO A;  2JI5 A;  3ZZG A;  3T7B A;  4I49 A;  2V5H A;  3QUO A;  2J5T A;  4A7X A;  2OGX A;  4A7W A;  3QVH A;  2IJ9 A;  3AB2 A;  3KZF A;  1OH9 A;  2VA1 A;  4JZ9 A;  4NDR B;  2J0X A;  2J4K A;  2J4L A;  2E9Y A;  3ZZF A;  3D41 A;  2CDQ A;  3LL5 A;  2BNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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