2J4LA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with utp to 2.8 angstrom resolution
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
226
structure length
214
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKIELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 73
structure length 214
sequence length 226
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4lA00
1Z9DA 1GSJA 3ZZFA 3ZZHA 3T7BA 4A7XA 1YBDA 3EK6A 4I49A 3S6KA 2V4YA 4A7WA 2E9YA 1E19A 1OH9A 4USJA 2HMFA 4NDRA 3K4YA 4JZ8A 3LL9A 4NDQA 2RD5A 3ZZGA 3LKKA 3B8GA 1GS5A 3D41A 3L76A 3NWYA 3C1NA 1OHBA 2JI5A 3WWMA 3AAWA 3C20A 3U6UA 2BMUA 4OLCA 4NDRB 4JZ9A 3QVFA 2AP9A 2AKOA 1OHAA 2J0WA 3K52A 4NDQB 2IJ9A 4JZ7A 3K4OA 2OGXA 2R98A 3QURA 4Q1TA 3TVIA 3QVHA 2W21A 3K56A 3AB4A 2J4LA 2OGXB 2JJXA 2WXBA 2VA1A 4F6TA 2V5HA 2BNFA 2BNEA 3S6HA 3C1MA 3AB2A 2J4KA 4AXSA 3L86A 3WWNA 4NDPA 2J0XA 3S6GA 3D40A 3D2MA 4F6TB 4AB7A 2WE4A 3KZFA 2J5TA 3ZZIA 2X2WA 3EK5A 4NDOA 2BRXA 2J4JA 4KZTA 2WE5A 2CDQA 2BTYA 1B7BA 2BRIA 3D2PA 3QUNA 4NDPB 3LL5A 3QUOA 2BUFA 2A1FA 2J5VA 2R8VA 2BNDA 4NDOB 2JJ4A
chains in the Genus database with same CATH superfamily
1Z9DA 1GSJA 3ZZFA 3ZZHA 3T7BA 4A7XA 1YBDA 3EK6A 4I49A 3S6KA 2V4YA 4A7WA 2E9YA 1E19A 1OH9A 4USJA 2HMFA 4NDRA 3K4YA 4JZ8A 3LL9A 4NDQA 2RD5A 3ZZGA 3LKKA 3B8GA 1GS5A 3D41A 3L76A 3NWYA 3C1NA 1OHBA 2JI5A 3WWMA 3AAWA 3C20A 3U6UA 2BMUA 4OLCA 4NDRB 4JZ9A 3QVFA 2AP9A 2AKOA 1OHAA 2J0WA 3K52A 4NDQB 2IJ9A 4JZ7A 3K4OA 2OGXA 2R98A 3QURA 4Q1TA 3TVIA 3QVHA 2W21A 3K56A 3AB4A 2J4LA 2OGXB 2JJXA 2WXBA 2VA1A 4F6TA 2V5HA 2BNFA 2BNEA 3S6HA 3C1MA 3AB2A 2J4KA 4AXSA 3L86A 3WWNA 4NDPA 2J0XA 3S6GA 3D40A 3D2MA 4F6TB 4AB7A 2WE4A 3KZFA 2J5TA 3ZZIA 2X2WA 3EK5A 4NDOA 2BRXA 2J4JA 4KZTA 2WE5A 2CDQA 2BTYA 1B7BA 2BRIA 3D2PA 3QUNA 4NDPB 3LL5A 3QUOA 2BUFA 2A1FA 2J5VA 2R8VA 2BNDA 4NDOB 2JJ4A
chains in the Genus database with same CATH topology
1Z9DA 1GSJA 3ZZFA 3ZZHA 3T7BA 4A7XA 1YBDA 3EK6A 4I49A 3S6KA 2V4YA 4A7WA 2E9YA 1E19A 1OH9A 4USJA 2HMFA 4NDRA 3K4YA 4JZ8A 3LL9A 4NDQA 2RD5A 3ZZGA 3LKKA 3B8GA 1GS5A 3D41A 3L76A 3NWYA 3C1NA 1OHBA 2JI5A 3WWMA 3AAWA 3C20A 3U6UA 2BMUA 4OLCA 4NDRB 4JZ9A 3QVFA 2AP9A 2AKOA 1OHAA 2J0WA 3K52A 4NDQB 2IJ9A 4JZ7A 3K4OA 2OGXA 2R98A 3QURA 4Q1TA 3TVIA 3QVHA 2W21A 3K56A 3AB4A 2J4LA 2OGXB 2JJXA 2WXBA 2VA1A 4F6TA 2V5HA 2BNFA 2BNEA 3S6HA 3C1MA 3AB2A 2J4KA 4AXSA 3L86A 3WWNA 4NDPA 2J0XA 3S6GA 3D40A 3D2MA 4F6TB 4AB7A 2WE4A 3KZFA 2J5TA 3ZZIA 2X2WA 3EK5A 4NDOA 2BRXA 2J4JA 4KZTA 2WE5A 2CDQA 2BTYA 1B7BA 2BRIA 3D2PA 3QUNA 4NDPB 3LL5A 3QUOA 2BUFA 2A1FA 2J5VA 2R8VA 2BNDA 4NDOB 2JJ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z9D A;  1GSJ A;  3ZZF A;  3ZZH A;  3T7B A;  4A7X A;  1YBD A;  3EK6 A;  4I49 A;  3S6K A;  2V4Y A;  4A7W A;  2E9Y A;  1E19 A;  1OH9 A;  4USJ A;  2HMF A;  4NDR A;  3K4Y A;  4JZ8 A;  3LL9 A;  4NDQ A;  2RD5 A;  3ZZG A;  3LKK A;  3B8G A;  1GS5 A;  3D41 A;  3L76 A;  3NWY A;  3C1N A;  1OHB A;  2JI5 A;  3WWM A;  3AAW A;  3C20 A;  3U6U A;  2BMU A;  4OLC A;  4NDR B;  4JZ9 A;  3QVF A;  2AP9 A;  2AKO A;  1OHA A;  2J0W A;  3K52 A;  4NDQ B;  2IJ9 A;  4JZ7 A;  3K4O A;  2OGX A;  2R98 A;  3QUR A;  4Q1T A;  3TVI A;  3QVH A;  2W21 A;  3K56 A;  3AB4 A;  2J4L A;  2OGX B;  2JJX A;  2WXB A;  2VA1 A;  4F6T A;  2V5H A;  2BNF A;  2BNE A;  3S6H A;  3C1M A;  3AB2 A;  2J4K A;  4AXS A;  3L86 A;  3WWN A;  4NDP A;  2J0X A;  3S6G A;  3D40 A;  3D2M A;  4F6T B;  4AB7 A;  2WE4 A;  3KZF A;  2J5T A;  3ZZI A;  2X2W A;  3EK5 A;  4NDO A;  2BRX A;  2J4J A;  4KZT A;  2WE5 A;  2CDQ A;  2BTY A;  1B7B A;  2BRI A;  3D2P A;  3QUN A;  4NDP B;  3LL5 A;  3QUO A;  2BUF A;  2A1F A;  2J5V A;  2R8V A;  2BND A;  4NDO B;  2JJ4 A; 
#chains in the Genus database with same CATH topology
 1Z9D A;  1GSJ A;  3ZZF A;  3ZZH A;  3T7B A;  4A7X A;  1YBD A;  3EK6 A;  4I49 A;  3S6K A;  2V4Y A;  4A7W A;  2E9Y A;  1E19 A;  1OH9 A;  4USJ A;  2HMF A;  4NDR A;  3K4Y A;  4JZ8 A;  3LL9 A;  4NDQ A;  2RD5 A;  3ZZG A;  3LKK A;  3B8G A;  1GS5 A;  3D41 A;  3L76 A;  3NWY A;  3C1N A;  1OHB A;  2JI5 A;  3WWM A;  3AAW A;  3C20 A;  3U6U A;  2BMU A;  4OLC A;  4NDR B;  4JZ9 A;  3QVF A;  2AP9 A;  2AKO A;  1OHA A;  2J0W A;  3K52 A;  4NDQ B;  2IJ9 A;  4JZ7 A;  3K4O A;  2OGX A;  2R98 A;  3QUR A;  4Q1T A;  3TVI A;  3QVH A;  2W21 A;  3K56 A;  3AB4 A;  2J4L A;  2OGX B;  2JJX A;  2WXB A;  2VA1 A;  4F6T A;  2V5H A;  2BNF A;  2BNE A;  3S6H A;  3C1M A;  3AB2 A;  2J4K A;  4AXS A;  3L86 A;  3WWN A;  4NDP A;  2J0X A;  3S6G A;  3D40 A;  3D2M A;  4F6T B;  4AB7 A;  2WE4 A;  3KZF A;  2J5T A;  3ZZI A;  2X2W A;  3EK5 A;  4NDO A;  2BRX A;  2J4J A;  4KZT A;  2WE5 A;  2CDQ A;  2BTY A;  1B7B A;  2BRI A;  3D2P A;  3QUN A;  4NDP B;  3LL5 A;  3QUO A;  2BUF A;  2A1F A;  2J5V A;  2R8V A;  2BND A;  4NDO B;  2JJ4 A; 
#chains in the Genus database with same CATH homology
 1Z9D A;  1GSJ A;  3ZZF A;  3ZZH A;  3T7B A;  4A7X A;  1YBD A;  3EK6 A;  4I49 A;  3S6K A;  2V4Y A;  4A7W A;  2E9Y A;  1E19 A;  1OH9 A;  4USJ A;  2HMF A;  4NDR A;  3K4Y A;  4JZ8 A;  3LL9 A;  4NDQ A;  2RD5 A;  3ZZG A;  3LKK A;  3B8G A;  1GS5 A;  3D41 A;  3L76 A;  3NWY A;  3C1N A;  1OHB A;  2JI5 A;  3WWM A;  3AAW A;  3C20 A;  3U6U A;  2BMU A;  4OLC A;  4NDR B;  4JZ9 A;  3QVF A;  2AP9 A;  2AKO A;  1OHA A;  2J0W A;  3K52 A;  4NDQ B;  2IJ9 A;  4JZ7 A;  3K4O A;  2OGX A;  2R98 A;  3QUR A;  4Q1T A;  3TVI A;  3QVH A;  2W21 A;  3K56 A;  3AB4 A;  2J4L A;  2OGX B;  2JJX A;  2WXB A;  2VA1 A;  4F6T A;  2V5H A;  2BNF A;  2BNE A;  3S6H A;  3C1M A;  3AB2 A;  2J4K A;  4AXS A;  3L86 A;  3WWN A;  4NDP A;  2J0X A;  3S6G A;  3D40 A;  3D2M A;  4F6T B;  4AB7 A;  2WE4 A;  3KZF A;  2J5T A;  3ZZI A;  2X2W A;  3EK5 A;  4NDO A;  2BRX A;  2J4J A;  4KZT A;  2WE5 A;  2CDQ A;  2BTY A;  1B7B A;  2BRI A;  3D2P A;  3QUN A;  4NDP B;  3LL5 A;  3QUO A;  2BUF A;  2A1F A;  2J5V A;  2R8V A;  2BND A;  4NDO B;  2JJ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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