2J4LA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with utp to 2.8 angstrom resolution
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
226
structure length
214
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKIELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 73
structure length 214
sequence length 226
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4lA00
3L76A 4I49A 4USJA 4JZ9A 3AB4A 2WE4A 3T7BA 4NDQB 3LKKA 4Q1TA 2VA1A 3L86A 3TVIA 2CDQA 4NDOB 2V5HA 3ZZGA 1OH9A 2WXBA 2BNEA 3K4YA 4A7WA 4OLCA 3S6KA 3QURA 2RD5A 3QVFA 2J4KA 3D2MA 3K56A 4A7XA 2J4LA 3K4OA 2HMFA 3D2PA 1YBDA 3D41A 3QUOA 3ZZFA 3B8GA 1GS5A 2A1FA 4NDQA 4F6TB 2BNFA 2AP9A 2AKOA 2BMUA 4NDOA 1B7BA 2IJ9A 2BRIA 2WE5A 2JI5A 4NDPB 1OHBA 3D40A 1E19A 1GSJA 2JJXA 2BUFA 3LL5A 3AB2A 3S6HA 3EK6A 4F6TA 4AB7A 2JJ4A 4NDRB 3WWNA 2R8VA 2J0XA 1Z9DA 3U6UA 3C1MA 2W21A 2J4JA 3QVHA 4NDPA 4AXSA 2V4YA 2BTYA 3AAWA 2J5TA 3S6GA 3LL9A 1OHAA 2BNDA 2R98A 2OGXA 2X2WA 2OGXB 3K52A 3KZFA 2J0WA 4JZ7A 3C20A 4JZ8A 4NDRA 2E9YA 3ZZIA 2J5VA 3WWMA 3QUNA 3NWYA 3C1NA 3ZZHA 3EK5A 4KZTA 2BRXA
chains in the Genus database with same CATH superfamily
3L76A 4I49A 4USJA 4JZ9A 3AB4A 2WE4A 3T7BA 4NDQB 3LKKA 4Q1TA 2VA1A 3L86A 3TVIA 2CDQA 4NDOB 2V5HA 3ZZGA 1OH9A 2WXBA 2BNEA 3K4YA 4A7WA 4OLCA 3S6KA 3QURA 2RD5A 3QVFA 2J4KA 3D2MA 3K56A 4A7XA 2J4LA 3K4OA 2HMFA 3D2PA 1YBDA 3D41A 3QUOA 3ZZFA 3B8GA 1GS5A 2A1FA 4NDQA 4F6TB 2BNFA 2AP9A 2AKOA 2BMUA 4NDOA 1B7BA 2IJ9A 2BRIA 2WE5A 2JI5A 4NDPB 1OHBA 3D40A 1E19A 1GSJA 2JJXA 2BUFA 3LL5A 3AB2A 3S6HA 3EK6A 4F6TA 4AB7A 2JJ4A 4NDRB 3WWNA 2R8VA 2J0XA 1Z9DA 3U6UA 3C1MA 2W21A 2J4JA 3QVHA 4NDPA 4AXSA 2V4YA 2BTYA 3AAWA 2J5TA 3S6GA 3LL9A 1OHAA 2BNDA 2R98A 2OGXA 2X2WA 2OGXB 3K52A 3KZFA 2J0WA 4JZ7A 3C20A 4JZ8A 4NDRA 2E9YA 3ZZIA 2J5VA 3WWMA 3QUNA 3NWYA 3C1NA 3ZZHA 3EK5A 4KZTA 2BRXA
chains in the Genus database with same CATH topology
3L76A 4I49A 4USJA 4JZ9A 3AB4A 2WE4A 3T7BA 4NDQB 3LKKA 4Q1TA 2VA1A 3L86A 3TVIA 2CDQA 4NDOB 2V5HA 3ZZGA 1OH9A 2WXBA 2BNEA 3K4YA 4A7WA 4OLCA 3S6KA 3QURA 2RD5A 3QVFA 2J4KA 3D2MA 3K56A 4A7XA 2J4LA 3K4OA 2HMFA 3D2PA 1YBDA 3D41A 3QUOA 3ZZFA 3B8GA 1GS5A 2A1FA 4NDQA 4F6TB 2BNFA 2AP9A 2AKOA 2BMUA 4NDOA 1B7BA 2IJ9A 2BRIA 2WE5A 2JI5A 4NDPB 1OHBA 3D40A 1E19A 1GSJA 2JJXA 2BUFA 3LL5A 3AB2A 3S6HA 3EK6A 4F6TA 4AB7A 2JJ4A 4NDRB 3WWNA 2R8VA 2J0XA 1Z9DA 3U6UA 3C1MA 2W21A 2J4JA 3QVHA 4NDPA 4AXSA 2V4YA 2BTYA 3AAWA 2J5TA 3S6GA 3LL9A 1OHAA 2BNDA 2R98A 2OGXA 2X2WA 2OGXB 3K52A 3KZFA 2J0WA 4JZ7A 3C20A 4JZ8A 4NDRA 2E9YA 3ZZIA 2J5VA 3WWMA 3QUNA 3NWYA 3C1NA 3ZZHA 3EK5A 4KZTA 2BRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L76 A;  4I49 A;  4USJ A;  4JZ9 A;  3AB4 A;  2WE4 A;  3T7B A;  4NDQ B;  3LKK A;  4Q1T A;  2VA1 A;  3L86 A;  3TVI A;  2CDQ A;  4NDO B;  2V5H A;  3ZZG A;  1OH9 A;  2WXB A;  2BNE A;  3K4Y A;  4A7W A;  4OLC A;  3S6K A;  3QUR A;  2RD5 A;  3QVF A;  2J4K A;  3D2M A;  3K56 A;  4A7X A;  2J4L A;  3K4O A;  2HMF A;  3D2P A;  1YBD A;  3D41 A;  3QUO A;  3ZZF A;  3B8G A;  1GS5 A;  2A1F A;  4NDQ A;  4F6T B;  2BNF A;  2AP9 A;  2AKO A;  2BMU A;  4NDO A;  1B7B A;  2IJ9 A;  2BRI A;  2WE5 A;  2JI5 A;  4NDP B;  1OHB A;  3D40 A;  1E19 A;  1GSJ A;  2JJX A;  2BUF A;  3LL5 A;  3AB2 A;  3S6H A;  3EK6 A;  4F6T A;  4AB7 A;  2JJ4 A;  4NDR B;  3WWN A;  2R8V A;  2J0X A;  1Z9D A;  3U6U A;  3C1M A;  2W21 A;  2J4J A;  3QVH A;  4NDP A;  4AXS A;  2V4Y A;  2BTY A;  3AAW A;  2J5T A;  3S6G A;  3LL9 A;  1OHA A;  2BND A;  2R98 A;  2OGX A;  2X2W A;  2OGX B;  3K52 A;  3KZF A;  2J0W A;  4JZ7 A;  3C20 A;  4JZ8 A;  4NDR A;  2E9Y A;  3ZZI A;  2J5V A;  3WWM A;  3QUN A;  3NWY A;  3C1N A;  3ZZH A;  3EK5 A;  4KZT A;  2BRX A; 
#chains in the Genus database with same CATH topology
 3L76 A;  4I49 A;  4USJ A;  4JZ9 A;  3AB4 A;  2WE4 A;  3T7B A;  4NDQ B;  3LKK A;  4Q1T A;  2VA1 A;  3L86 A;  3TVI A;  2CDQ A;  4NDO B;  2V5H A;  3ZZG A;  1OH9 A;  2WXB A;  2BNE A;  3K4Y A;  4A7W A;  4OLC A;  3S6K A;  3QUR A;  2RD5 A;  3QVF A;  2J4K A;  3D2M A;  3K56 A;  4A7X A;  2J4L A;  3K4O A;  2HMF A;  3D2P A;  1YBD A;  3D41 A;  3QUO A;  3ZZF A;  3B8G A;  1GS5 A;  2A1F A;  4NDQ A;  4F6T B;  2BNF A;  2AP9 A;  2AKO A;  2BMU A;  4NDO A;  1B7B A;  2IJ9 A;  2BRI A;  2WE5 A;  2JI5 A;  4NDP B;  1OHB A;  3D40 A;  1E19 A;  1GSJ A;  2JJX A;  2BUF A;  3LL5 A;  3AB2 A;  3S6H A;  3EK6 A;  4F6T A;  4AB7 A;  2JJ4 A;  4NDR B;  3WWN A;  2R8V A;  2J0X A;  1Z9D A;  3U6U A;  3C1M A;  2W21 A;  2J4J A;  3QVH A;  4NDP A;  4AXS A;  2V4Y A;  2BTY A;  3AAW A;  2J5T A;  3S6G A;  3LL9 A;  1OHA A;  2BND A;  2R98 A;  2OGX A;  2X2W A;  2OGX B;  3K52 A;  3KZF A;  2J0W A;  4JZ7 A;  3C20 A;  4JZ8 A;  4NDR A;  2E9Y A;  3ZZI A;  2J5V A;  3WWM A;  3QUN A;  3NWY A;  3C1N A;  3ZZH A;  3EK5 A;  4KZT A;  2BRX A; 
#chains in the Genus database with same CATH homology
 3L76 A;  4I49 A;  4USJ A;  4JZ9 A;  3AB4 A;  2WE4 A;  3T7B A;  4NDQ B;  3LKK A;  4Q1T A;  2VA1 A;  3L86 A;  3TVI A;  2CDQ A;  4NDO B;  2V5H A;  3ZZG A;  1OH9 A;  2WXB A;  2BNE A;  3K4Y A;  4A7W A;  4OLC A;  3S6K A;  3QUR A;  2RD5 A;  3QVF A;  2J4K A;  3D2M A;  3K56 A;  4A7X A;  2J4L A;  3K4O A;  2HMF A;  3D2P A;  1YBD A;  3D41 A;  3QUO A;  3ZZF A;  3B8G A;  1GS5 A;  2A1F A;  4NDQ A;  4F6T B;  2BNF A;  2AP9 A;  2AKO A;  2BMU A;  4NDO A;  1B7B A;  2IJ9 A;  2BRI A;  2WE5 A;  2JI5 A;  4NDP B;  1OHB A;  3D40 A;  1E19 A;  1GSJ A;  2JJX A;  2BUF A;  3LL5 A;  3AB2 A;  3S6H A;  3EK6 A;  4F6T A;  4AB7 A;  2JJ4 A;  4NDR B;  3WWN A;  2R8V A;  2J0X A;  1Z9D A;  3U6U A;  3C1M A;  2W21 A;  2J4J A;  3QVH A;  4NDP A;  4AXS A;  2V4Y A;  2BTY A;  3AAW A;  2J5T A;  3S6G A;  3LL9 A;  1OHA A;  2BND A;  2R98 A;  2OGX A;  2X2W A;  2OGX B;  3K52 A;  3KZF A;  2J0W A;  4JZ7 A;  3C20 A;  4JZ8 A;  4NDR A;  2E9Y A;  3ZZI A;  2J5V A;  3WWM A;  3QUN A;  3NWY A;  3C1N A;  3ZZH A;  3EK5 A;  4KZT A;  2BRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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