2J4LA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with utp to 2.8 angstrom resolution
Total Genus 73
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
226
structure length
214
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKIELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
molecule keywords URIDYLATE KINASE
total genus 73
structure length 214
sequence length 226
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4lA00
4NDPA 4NDPB 3ZZFA 2W21A 4AB7A 3K56A 3C20A 4KZTA 2V5HA 3C1MA 3LL5A 1E19A 2R8VA 3LKKA 2AKOA 3QUNA 2BNFA 3ZZHA 2WE4A 3D40A 3L86A 3QURA 3U6UA 3QUOA 2OGXA 2J5TA 3L76A 2BRXA 3QVFA 4NDRA 2JJ4A 4AXSA 1OHBA 3LL9A 3B8GA 3K4OA 2J4JA 2JI5A 2BTYA 2WXBA 4JZ9A 1YBDA 3T7BA 3AB2A 3WWNA 2AP9A 3ZZIA 2V4YA 2E9YA 3S6HA 2JJXA 2BMUA 3AB4A 2J0XA 3KZFA 4NDQA 3D2PA 2BNEA 3ZZGA 4A7XA 3K52A 2J0WA 2HMFA 2BRIA 3D41A 4Q1TA 3WWMA 2RD5A 2BUFA 4NDRB 1GSJA 2WE5A 3EK6A 2J4KA 4F6TA 2X2WA 3S6GA 4JZ8A 2J5VA 3EK5A 4JZ7A 1GS5A 3AAWA 3QVHA 4NDQB 1Z9DA 4NDOA 4NDOB 3S6KA 4OLCA 2BNDA 3NWYA 3K4YA 4USJA 2J4LA 3C1NA 1OHAA 4F6TB 2A1FA 1B7BA 1OH9A 2OGXB 3TVIA 2VA1A 2IJ9A 3D2MA 2CDQA 2R98A 4A7WA 4I49A
chains in the Genus database with same CATH superfamily
4NDPA 4NDPB 3ZZFA 2W21A 4AB7A 3K56A 3C20A 4KZTA 2V5HA 3C1MA 3LL5A 1E19A 2R8VA 3LKKA 2AKOA 3QUNA 2BNFA 3ZZHA 2WE4A 3D40A 3L86A 3QURA 3U6UA 3QUOA 2OGXA 2J5TA 3L76A 2BRXA 3QVFA 4NDRA 2JJ4A 4AXSA 1OHBA 3LL9A 3B8GA 3K4OA 2J4JA 2JI5A 2BTYA 2WXBA 4JZ9A 1YBDA 3T7BA 3AB2A 3WWNA 2AP9A 3ZZIA 2V4YA 2E9YA 3S6HA 2JJXA 2BMUA 3AB4A 2J0XA 3KZFA 4NDQA 3D2PA 2BNEA 3ZZGA 4A7XA 3K52A 2J0WA 2HMFA 2BRIA 3D41A 4Q1TA 3WWMA 2RD5A 2BUFA 4NDRB 1GSJA 2WE5A 3EK6A 2J4KA 4F6TA 2X2WA 3S6GA 4JZ8A 2J5VA 3EK5A 4JZ7A 1GS5A 3AAWA 3QVHA 4NDQB 1Z9DA 4NDOA 4NDOB 3S6KA 4OLCA 2BNDA 3NWYA 3K4YA 4USJA 2J4LA 3C1NA 1OHAA 4F6TB 2A1FA 1B7BA 1OH9A 2OGXB 3TVIA 2VA1A 2IJ9A 3D2MA 2CDQA 2R98A 4A7WA 4I49A
chains in the Genus database with same CATH topology
4NDPA 4NDPB 3ZZFA 2W21A 4AB7A 3K56A 3C20A 4KZTA 2V5HA 3C1MA 3LL5A 1E19A 2R8VA 3LKKA 2AKOA 3QUNA 2BNFA 3ZZHA 2WE4A 3D40A 3L86A 3QURA 3U6UA 3QUOA 2OGXA 2J5TA 3L76A 2BRXA 3QVFA 4NDRA 2JJ4A 4AXSA 1OHBA 3LL9A 3B8GA 3K4OA 2J4JA 2JI5A 2BTYA 2WXBA 4JZ9A 1YBDA 3T7BA 3AB2A 3WWNA 2AP9A 3ZZIA 2V4YA 2E9YA 3S6HA 2JJXA 2BMUA 3AB4A 2J0XA 3KZFA 4NDQA 3D2PA 2BNEA 3ZZGA 4A7XA 3K52A 2J0WA 2HMFA 2BRIA 3D41A 4Q1TA 3WWMA 2RD5A 2BUFA 4NDRB 1GSJA 2WE5A 3EK6A 2J4KA 4F6TA 2X2WA 3S6GA 4JZ8A 2J5VA 3EK5A 4JZ7A 1GS5A 3AAWA 3QVHA 4NDQB 1Z9DA 4NDOA 4NDOB 3S6KA 4OLCA 2BNDA 3NWYA 3K4YA 4USJA 2J4LA 3C1NA 1OHAA 4F6TB 2A1FA 1B7BA 1OH9A 2OGXB 3TVIA 2VA1A 2IJ9A 3D2MA 2CDQA 2R98A 4A7WA 4I49A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDP A;  4NDP B;  3ZZF A;  2W21 A;  4AB7 A;  3K56 A;  3C20 A;  4KZT A;  2V5H A;  3C1M A;  3LL5 A;  1E19 A;  2R8V A;  3LKK A;  2AKO A;  3QUN A;  2BNF A;  3ZZH A;  2WE4 A;  3D40 A;  3L86 A;  3QUR A;  3U6U A;  3QUO A;  2OGX A;  2J5T A;  3L76 A;  2BRX A;  3QVF A;  4NDR A;  2JJ4 A;  4AXS A;  1OHB A;  3LL9 A;  3B8G A;  3K4O A;  2J4J A;  2JI5 A;  2BTY A;  2WXB A;  4JZ9 A;  1YBD A;  3T7B A;  3AB2 A;  3WWN A;  2AP9 A;  3ZZI A;  2V4Y A;  2E9Y A;  3S6H A;  2JJX A;  2BMU A;  3AB4 A;  2J0X A;  3KZF A;  4NDQ A;  3D2P A;  2BNE A;  3ZZG A;  4A7X A;  3K52 A;  2J0W A;  2HMF A;  2BRI A;  3D41 A;  4Q1T A;  3WWM A;  2RD5 A;  2BUF A;  4NDR B;  1GSJ A;  2WE5 A;  3EK6 A;  2J4K A;  4F6T A;  2X2W A;  3S6G A;  4JZ8 A;  2J5V A;  3EK5 A;  4JZ7 A;  1GS5 A;  3AAW A;  3QVH A;  4NDQ B;  1Z9D A;  4NDO A;  4NDO B;  3S6K A;  4OLC A;  2BND A;  3NWY A;  3K4Y A;  4USJ A;  2J4L A;  3C1N A;  1OHA A;  4F6T B;  2A1F A;  1B7B A;  1OH9 A;  2OGX B;  3TVI A;  2VA1 A;  2IJ9 A;  3D2M A;  2CDQ A;  2R98 A;  4A7W A;  4I49 A; 
#chains in the Genus database with same CATH topology
 4NDP A;  4NDP B;  3ZZF A;  2W21 A;  4AB7 A;  3K56 A;  3C20 A;  4KZT A;  2V5H A;  3C1M A;  3LL5 A;  1E19 A;  2R8V A;  3LKK A;  2AKO A;  3QUN A;  2BNF A;  3ZZH A;  2WE4 A;  3D40 A;  3L86 A;  3QUR A;  3U6U A;  3QUO A;  2OGX A;  2J5T A;  3L76 A;  2BRX A;  3QVF A;  4NDR A;  2JJ4 A;  4AXS A;  1OHB A;  3LL9 A;  3B8G A;  3K4O A;  2J4J A;  2JI5 A;  2BTY A;  2WXB A;  4JZ9 A;  1YBD A;  3T7B A;  3AB2 A;  3WWN A;  2AP9 A;  3ZZI A;  2V4Y A;  2E9Y A;  3S6H A;  2JJX A;  2BMU A;  3AB4 A;  2J0X A;  3KZF A;  4NDQ A;  3D2P A;  2BNE A;  3ZZG A;  4A7X A;  3K52 A;  2J0W A;  2HMF A;  2BRI A;  3D41 A;  4Q1T A;  3WWM A;  2RD5 A;  2BUF A;  4NDR B;  1GSJ A;  2WE5 A;  3EK6 A;  2J4K A;  4F6T A;  2X2W A;  3S6G A;  4JZ8 A;  2J5V A;  3EK5 A;  4JZ7 A;  1GS5 A;  3AAW A;  3QVH A;  4NDQ B;  1Z9D A;  4NDO A;  4NDO B;  3S6K A;  4OLC A;  2BND A;  3NWY A;  3K4Y A;  4USJ A;  2J4L A;  3C1N A;  1OHA A;  4F6T B;  2A1F A;  1B7B A;  1OH9 A;  2OGX B;  3TVI A;  2VA1 A;  2IJ9 A;  3D2M A;  2CDQ A;  2R98 A;  4A7W A;  4I49 A; 
#chains in the Genus database with same CATH homology
 4NDP A;  4NDP B;  3ZZF A;  2W21 A;  4AB7 A;  3K56 A;  3C20 A;  4KZT A;  2V5H A;  3C1M A;  3LL5 A;  1E19 A;  2R8V A;  3LKK A;  2AKO A;  3QUN A;  2BNF A;  3ZZH A;  2WE4 A;  3D40 A;  3L86 A;  3QUR A;  3U6U A;  3QUO A;  2OGX A;  2J5T A;  3L76 A;  2BRX A;  3QVF A;  4NDR A;  2JJ4 A;  4AXS A;  1OHB A;  3LL9 A;  3B8G A;  3K4O A;  2J4J A;  2JI5 A;  2BTY A;  2WXB A;  4JZ9 A;  1YBD A;  3T7B A;  3AB2 A;  3WWN A;  2AP9 A;  3ZZI A;  2V4Y A;  2E9Y A;  3S6H A;  2JJX A;  2BMU A;  3AB4 A;  2J0X A;  3KZF A;  4NDQ A;  3D2P A;  2BNE A;  3ZZG A;  4A7X A;  3K52 A;  2J0W A;  2HMF A;  2BRI A;  3D41 A;  4Q1T A;  3WWM A;  2RD5 A;  2BUF A;  4NDR B;  1GSJ A;  2WE5 A;  3EK6 A;  2J4K A;  4F6T A;  2X2W A;  3S6G A;  4JZ8 A;  2J5V A;  3EK5 A;  4JZ7 A;  1GS5 A;  3AAW A;  3QVH A;  4NDQ B;  1Z9D A;  4NDO A;  4NDO B;  3S6K A;  4OLC A;  2BND A;  3NWY A;  3K4Y A;  4USJ A;  2J4L A;  3C1N A;  1OHA A;  4F6T B;  2A1F A;  1B7B A;  1OH9 A;  2OGX B;  3TVI A;  2VA1 A;  2IJ9 A;  3D2M A;  2CDQ A;  2R98 A;  4A7W A;  4I49 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...