2J4JA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump and amppcp to 2.1 angstrom resolution
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
226
structure length
216
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 76
structure length 216
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4jA00
3AAWA 3S6KA 2JJXA 3D40A 3S6HA 2A1FA 1YBDA 4JZ8A 2W21A 2BNFA 1OH9A 2JI5A 3TVIA 2J5VA 1OHAA 2OGXA 3LL9A 3S6GA 2BRXA 4AB7A 2J5TA 3B8GA 1OHBA 2AKOA 1Z9DA 2WE4A 4NDRA 3U6UA 3KZFA 4I49A 2JJ4A 2V5HA 2R98A 3ZZHA 3K52A 2J4LA 4F6TA 2BRIA 4NDOB 3LL5A 2J4KA 3NWYA 3EK6A 4NDPB 2BTYA 4A7WA 2J4JA 2J0WA 4USJA 4NDQA 3D2MA 3C20A 3D41A 2AP9A 3AB2A 1E19A 2BMUA 2BNEA 3WWMA 3L76A 3QVHA 1GSJA 2OGXB 2R8VA 2X2WA 3QVFA 2V4YA 3L86A 3ZZGA 3QURA 4NDRB 1B7BA 4A7XA 4KZTA 3C1NA 4JZ7A 2E9YA 2WE5A 4Q1TA 1GS5A 4AXSA 3K4OA 2BUFA 3QUNA 3ZZIA 4JZ9A 4F6TB 2HMFA 3AB4A 3C1MA 4OLCA 3EK5A 3T7BA 3ZZFA 3WWNA 3D2PA 4NDQB 2BNDA 3LKKA 3K4YA 2VA1A 2CDQA 3K56A 4NDOA 2WXBA 2IJ9A 2J0XA 3QUOA 2RD5A 4NDPA
chains in the Genus database with same CATH superfamily
3AAWA 3S6KA 2JJXA 3D40A 3S6HA 2A1FA 1YBDA 4JZ8A 2W21A 2BNFA 1OH9A 2JI5A 3TVIA 2J5VA 1OHAA 2OGXA 3LL9A 3S6GA 2BRXA 4AB7A 2J5TA 3B8GA 1OHBA 2AKOA 1Z9DA 2WE4A 4NDRA 3U6UA 3KZFA 4I49A 2JJ4A 2V5HA 2R98A 3ZZHA 3K52A 2J4LA 4F6TA 2BRIA 4NDOB 3LL5A 2J4KA 3NWYA 3EK6A 4NDPB 2BTYA 4A7WA 2J4JA 2J0WA 4USJA 4NDQA 3D2MA 3C20A 3D41A 2AP9A 3AB2A 1E19A 2BMUA 2BNEA 3WWMA 3L76A 3QVHA 1GSJA 2OGXB 2R8VA 2X2WA 3QVFA 2V4YA 3L86A 3ZZGA 3QURA 4NDRB 1B7BA 4A7XA 4KZTA 3C1NA 4JZ7A 2E9YA 2WE5A 4Q1TA 1GS5A 4AXSA 3K4OA 2BUFA 3QUNA 3ZZIA 4JZ9A 4F6TB 2HMFA 3AB4A 3C1MA 4OLCA 3EK5A 3T7BA 3ZZFA 3WWNA 3D2PA 4NDQB 2BNDA 3LKKA 3K4YA 2VA1A 2CDQA 3K56A 4NDOA 2WXBA 2IJ9A 2J0XA 3QUOA 2RD5A 4NDPA
chains in the Genus database with same CATH topology
3AAWA 3S6KA 2JJXA 3D40A 3S6HA 2A1FA 1YBDA 4JZ8A 2W21A 2BNFA 1OH9A 2JI5A 3TVIA 2J5VA 1OHAA 2OGXA 3LL9A 3S6GA 2BRXA 4AB7A 2J5TA 3B8GA 1OHBA 2AKOA 1Z9DA 2WE4A 4NDRA 3U6UA 3KZFA 4I49A 2JJ4A 2V5HA 2R98A 3ZZHA 3K52A 2J4LA 4F6TA 2BRIA 4NDOB 3LL5A 2J4KA 3NWYA 3EK6A 4NDPB 2BTYA 4A7WA 2J4JA 2J0WA 4USJA 4NDQA 3D2MA 3C20A 3D41A 2AP9A 3AB2A 1E19A 2BMUA 2BNEA 3WWMA 3L76A 3QVHA 1GSJA 2OGXB 2R8VA 2X2WA 3QVFA 2V4YA 3L86A 3ZZGA 3QURA 4NDRB 1B7BA 4A7XA 4KZTA 3C1NA 4JZ7A 2E9YA 2WE5A 4Q1TA 1GS5A 4AXSA 3K4OA 2BUFA 3QUNA 3ZZIA 4JZ9A 4F6TB 2HMFA 3AB4A 3C1MA 4OLCA 3EK5A 3T7BA 3ZZFA 3WWNA 3D2PA 4NDQB 2BNDA 3LKKA 3K4YA 2VA1A 2CDQA 3K56A 4NDOA 2WXBA 2IJ9A 2J0XA 3QUOA 2RD5A 4NDPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAW A;  3S6K A;  2JJX A;  3D40 A;  3S6H A;  2A1F A;  1YBD A;  4JZ8 A;  2W21 A;  2BNF A;  1OH9 A;  2JI5 A;  3TVI A;  2J5V A;  1OHA A;  2OGX A;  3LL9 A;  3S6G A;  2BRX A;  4AB7 A;  2J5T A;  3B8G A;  1OHB A;  2AKO A;  1Z9D A;  2WE4 A;  4NDR A;  3U6U A;  3KZF A;  4I49 A;  2JJ4 A;  2V5H A;  2R98 A;  3ZZH A;  3K52 A;  2J4L A;  4F6T A;  2BRI A;  4NDO B;  3LL5 A;  2J4K A;  3NWY A;  3EK6 A;  4NDP B;  2BTY A;  4A7W A;  2J4J A;  2J0W A;  4USJ A;  4NDQ A;  3D2M A;  3C20 A;  3D41 A;  2AP9 A;  3AB2 A;  1E19 A;  2BMU A;  2BNE A;  3WWM A;  3L76 A;  3QVH A;  1GSJ A;  2OGX B;  2R8V A;  2X2W A;  3QVF A;  2V4Y A;  3L86 A;  3ZZG A;  3QUR A;  4NDR B;  1B7B A;  4A7X A;  4KZT A;  3C1N A;  4JZ7 A;  2E9Y A;  2WE5 A;  4Q1T A;  1GS5 A;  4AXS A;  3K4O A;  2BUF A;  3QUN A;  3ZZI A;  4JZ9 A;  4F6T B;  2HMF A;  3AB4 A;  3C1M A;  4OLC A;  3EK5 A;  3T7B A;  3ZZF A;  3WWN A;  3D2P A;  4NDQ B;  2BND A;  3LKK A;  3K4Y A;  2VA1 A;  2CDQ A;  3K56 A;  4NDO A;  2WXB A;  2IJ9 A;  2J0X A;  3QUO A;  2RD5 A;  4NDP A; 
#chains in the Genus database with same CATH topology
 3AAW A;  3S6K A;  2JJX A;  3D40 A;  3S6H A;  2A1F A;  1YBD A;  4JZ8 A;  2W21 A;  2BNF A;  1OH9 A;  2JI5 A;  3TVI A;  2J5V A;  1OHA A;  2OGX A;  3LL9 A;  3S6G A;  2BRX A;  4AB7 A;  2J5T A;  3B8G A;  1OHB A;  2AKO A;  1Z9D A;  2WE4 A;  4NDR A;  3U6U A;  3KZF A;  4I49 A;  2JJ4 A;  2V5H A;  2R98 A;  3ZZH A;  3K52 A;  2J4L A;  4F6T A;  2BRI A;  4NDO B;  3LL5 A;  2J4K A;  3NWY A;  3EK6 A;  4NDP B;  2BTY A;  4A7W A;  2J4J A;  2J0W A;  4USJ A;  4NDQ A;  3D2M A;  3C20 A;  3D41 A;  2AP9 A;  3AB2 A;  1E19 A;  2BMU A;  2BNE A;  3WWM A;  3L76 A;  3QVH A;  1GSJ A;  2OGX B;  2R8V A;  2X2W A;  3QVF A;  2V4Y A;  3L86 A;  3ZZG A;  3QUR A;  4NDR B;  1B7B A;  4A7X A;  4KZT A;  3C1N A;  4JZ7 A;  2E9Y A;  2WE5 A;  4Q1T A;  1GS5 A;  4AXS A;  3K4O A;  2BUF A;  3QUN A;  3ZZI A;  4JZ9 A;  4F6T B;  2HMF A;  3AB4 A;  3C1M A;  4OLC A;  3EK5 A;  3T7B A;  3ZZF A;  3WWN A;  3D2P A;  4NDQ B;  2BND A;  3LKK A;  3K4Y A;  2VA1 A;  2CDQ A;  3K56 A;  4NDO A;  2WXB A;  2IJ9 A;  2J0X A;  3QUO A;  2RD5 A;  4NDP A; 
#chains in the Genus database with same CATH homology
 3AAW A;  3S6K A;  2JJX A;  3D40 A;  3S6H A;  2A1F A;  1YBD A;  4JZ8 A;  2W21 A;  2BNF A;  1OH9 A;  2JI5 A;  3TVI A;  2J5V A;  1OHA A;  2OGX A;  3LL9 A;  3S6G A;  2BRX A;  4AB7 A;  2J5T A;  3B8G A;  1OHB A;  2AKO A;  1Z9D A;  2WE4 A;  4NDR A;  3U6U A;  3KZF A;  4I49 A;  2JJ4 A;  2V5H A;  2R98 A;  3ZZH A;  3K52 A;  2J4L A;  4F6T A;  2BRI A;  4NDO B;  3LL5 A;  2J4K A;  3NWY A;  3EK6 A;  4NDP B;  2BTY A;  4A7W A;  2J4J A;  2J0W A;  4USJ A;  4NDQ A;  3D2M A;  3C20 A;  3D41 A;  2AP9 A;  3AB2 A;  1E19 A;  2BMU A;  2BNE A;  3WWM A;  3L76 A;  3QVH A;  1GSJ A;  2OGX B;  2R8V A;  2X2W A;  3QVF A;  2V4Y A;  3L86 A;  3ZZG A;  3QUR A;  4NDR B;  1B7B A;  4A7X A;  4KZT A;  3C1N A;  4JZ7 A;  2E9Y A;  2WE5 A;  4Q1T A;  1GS5 A;  4AXS A;  3K4O A;  2BUF A;  3QUN A;  3ZZI A;  4JZ9 A;  4F6T B;  2HMF A;  3AB4 A;  3C1M A;  4OLC A;  3EK5 A;  3T7B A;  3ZZF A;  3WWN A;  3D2P A;  4NDQ B;  2BND A;  3LKK A;  3K4Y A;  2VA1 A;  2CDQ A;  3K56 A;  4NDO A;  2WXB A;  2IJ9 A;  2J0X A;  3QUO A;  2RD5 A;  4NDP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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