2J4JA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump and amppcp to 2.1 angstrom resolution
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
226
structure length
216
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 76
structure length 216
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4jA00
3QVFA 3K4OA 2A1FA 2X2WA 1OHAA 3B8GA 3NWYA 3C1MA 3QUOA 3D41A 4AXSA 3KZFA 2BNEA 2J4KA 2HMFA 3ZZFA 2R98A 3D40A 2E9YA 4NDQA 2J5VA 4Q1TA 3C20A 4F6TA 2VA1A 4NDQB 3D2MA 4NDPB 4NDOA 2WXBA 3WWMA 3QURA 3S6GA 3LKKA 3D2PA 2R8VA 3ZZGA 4JZ8A 4F6TB 2BNDA 3ZZHA 4NDOB 2WE5A 2BTYA 2CDQA 3QUNA 4JZ9A 1OH9A 2RD5A 4JZ7A 2JI5A 2JJXA 2IJ9A 2BRXA 1GS5A 3AB4A 3TVIA 1Z9DA 3L76A 2BRIA 2BUFA 3LL9A 2J0WA 2J4LA 4A7WA 2OGXA 2V4YA 4I49A 3EK5A 3T7BA 2J4JA 2W21A 3QVHA 2BMUA 1YBDA 3K56A 3S6HA 1OHBA 1B7BA 3EK6A 2AKOA 3K4YA 2AP9A 2J5TA 1E19A 4AB7A 3S6KA 2JJ4A 3AAWA 4A7XA 2BNFA 3K52A 3L86A 3C1NA 3U6UA 4KZTA 4USJA 3ZZIA 3WWNA 4NDRA 4NDPA 2WE4A 2V5HA 3LL5A 2OGXB 1GSJA 3AB2A 2J0XA 4NDRB 4OLCA
chains in the Genus database with same CATH superfamily
3QVFA 3K4OA 2A1FA 2X2WA 1OHAA 3B8GA 3NWYA 3C1MA 3QUOA 3D41A 4AXSA 3KZFA 2BNEA 2J4KA 2HMFA 3ZZFA 2R98A 3D40A 2E9YA 4NDQA 2J5VA 4Q1TA 3C20A 4F6TA 2VA1A 4NDQB 3D2MA 4NDPB 4NDOA 2WXBA 3WWMA 3QURA 3S6GA 3LKKA 3D2PA 2R8VA 3ZZGA 4JZ8A 4F6TB 2BNDA 3ZZHA 4NDOB 2WE5A 2BTYA 2CDQA 3QUNA 4JZ9A 1OH9A 2RD5A 4JZ7A 2JI5A 2JJXA 2IJ9A 2BRXA 1GS5A 3AB4A 3TVIA 1Z9DA 3L76A 2BRIA 2BUFA 3LL9A 2J0WA 2J4LA 4A7WA 2OGXA 2V4YA 4I49A 3EK5A 3T7BA 2J4JA 2W21A 3QVHA 2BMUA 1YBDA 3K56A 3S6HA 1OHBA 1B7BA 3EK6A 2AKOA 3K4YA 2AP9A 2J5TA 1E19A 4AB7A 3S6KA 2JJ4A 3AAWA 4A7XA 2BNFA 3K52A 3L86A 3C1NA 3U6UA 4KZTA 4USJA 3ZZIA 3WWNA 4NDRA 4NDPA 2WE4A 2V5HA 3LL5A 2OGXB 1GSJA 3AB2A 2J0XA 4NDRB 4OLCA
chains in the Genus database with same CATH topology
3QVFA 3K4OA 2A1FA 2X2WA 1OHAA 3B8GA 3NWYA 3C1MA 3QUOA 3D41A 4AXSA 3KZFA 2BNEA 2J4KA 2HMFA 3ZZFA 2R98A 3D40A 2E9YA 4NDQA 2J5VA 4Q1TA 3C20A 4F6TA 2VA1A 4NDQB 3D2MA 4NDPB 4NDOA 2WXBA 3WWMA 3QURA 3S6GA 3LKKA 3D2PA 2R8VA 3ZZGA 4JZ8A 4F6TB 2BNDA 3ZZHA 4NDOB 2WE5A 2BTYA 2CDQA 3QUNA 4JZ9A 1OH9A 2RD5A 4JZ7A 2JI5A 2JJXA 2IJ9A 2BRXA 1GS5A 3AB4A 3TVIA 1Z9DA 3L76A 2BRIA 2BUFA 3LL9A 2J0WA 2J4LA 4A7WA 2OGXA 2V4YA 4I49A 3EK5A 3T7BA 2J4JA 2W21A 3QVHA 2BMUA 1YBDA 3K56A 3S6HA 1OHBA 1B7BA 3EK6A 2AKOA 3K4YA 2AP9A 2J5TA 1E19A 4AB7A 3S6KA 2JJ4A 3AAWA 4A7XA 2BNFA 3K52A 3L86A 3C1NA 3U6UA 4KZTA 4USJA 3ZZIA 3WWNA 4NDRA 4NDPA 2WE4A 2V5HA 3LL5A 2OGXB 1GSJA 3AB2A 2J0XA 4NDRB 4OLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QVF A;  3K4O A;  2A1F A;  2X2W A;  1OHA A;  3B8G A;  3NWY A;  3C1M A;  3QUO A;  3D41 A;  4AXS A;  3KZF A;  2BNE A;  2J4K A;  2HMF A;  3ZZF A;  2R98 A;  3D40 A;  2E9Y A;  4NDQ A;  2J5V A;  4Q1T A;  3C20 A;  4F6T A;  2VA1 A;  4NDQ B;  3D2M A;  4NDP B;  4NDO A;  2WXB A;  3WWM A;  3QUR A;  3S6G A;  3LKK A;  3D2P A;  2R8V A;  3ZZG A;  4JZ8 A;  4F6T B;  2BND A;  3ZZH A;  4NDO B;  2WE5 A;  2BTY A;  2CDQ A;  3QUN A;  4JZ9 A;  1OH9 A;  2RD5 A;  4JZ7 A;  2JI5 A;  2JJX A;  2IJ9 A;  2BRX A;  1GS5 A;  3AB4 A;  3TVI A;  1Z9D A;  3L76 A;  2BRI A;  2BUF A;  3LL9 A;  2J0W A;  2J4L A;  4A7W A;  2OGX A;  2V4Y A;  4I49 A;  3EK5 A;  3T7B A;  2J4J A;  2W21 A;  3QVH A;  2BMU A;  1YBD A;  3K56 A;  3S6H A;  1OHB A;  1B7B A;  3EK6 A;  2AKO A;  3K4Y A;  2AP9 A;  2J5T A;  1E19 A;  4AB7 A;  3S6K A;  2JJ4 A;  3AAW A;  4A7X A;  2BNF A;  3K52 A;  3L86 A;  3C1N A;  3U6U A;  4KZT A;  4USJ A;  3ZZI A;  3WWN A;  4NDR A;  4NDP A;  2WE4 A;  2V5H A;  3LL5 A;  2OGX B;  1GSJ A;  3AB2 A;  2J0X A;  4NDR B;  4OLC A; 
#chains in the Genus database with same CATH topology
 3QVF A;  3K4O A;  2A1F A;  2X2W A;  1OHA A;  3B8G A;  3NWY A;  3C1M A;  3QUO A;  3D41 A;  4AXS A;  3KZF A;  2BNE A;  2J4K A;  2HMF A;  3ZZF A;  2R98 A;  3D40 A;  2E9Y A;  4NDQ A;  2J5V A;  4Q1T A;  3C20 A;  4F6T A;  2VA1 A;  4NDQ B;  3D2M A;  4NDP B;  4NDO A;  2WXB A;  3WWM A;  3QUR A;  3S6G A;  3LKK A;  3D2P A;  2R8V A;  3ZZG A;  4JZ8 A;  4F6T B;  2BND A;  3ZZH A;  4NDO B;  2WE5 A;  2BTY A;  2CDQ A;  3QUN A;  4JZ9 A;  1OH9 A;  2RD5 A;  4JZ7 A;  2JI5 A;  2JJX A;  2IJ9 A;  2BRX A;  1GS5 A;  3AB4 A;  3TVI A;  1Z9D A;  3L76 A;  2BRI A;  2BUF A;  3LL9 A;  2J0W A;  2J4L A;  4A7W A;  2OGX A;  2V4Y A;  4I49 A;  3EK5 A;  3T7B A;  2J4J A;  2W21 A;  3QVH A;  2BMU A;  1YBD A;  3K56 A;  3S6H A;  1OHB A;  1B7B A;  3EK6 A;  2AKO A;  3K4Y A;  2AP9 A;  2J5T A;  1E19 A;  4AB7 A;  3S6K A;  2JJ4 A;  3AAW A;  4A7X A;  2BNF A;  3K52 A;  3L86 A;  3C1N A;  3U6U A;  4KZT A;  4USJ A;  3ZZI A;  3WWN A;  4NDR A;  4NDP A;  2WE4 A;  2V5H A;  3LL5 A;  2OGX B;  1GSJ A;  3AB2 A;  2J0X A;  4NDR B;  4OLC A; 
#chains in the Genus database with same CATH homology
 3QVF A;  3K4O A;  2A1F A;  2X2W A;  1OHA A;  3B8G A;  3NWY A;  3C1M A;  3QUO A;  3D41 A;  4AXS A;  3KZF A;  2BNE A;  2J4K A;  2HMF A;  3ZZF A;  2R98 A;  3D40 A;  2E9Y A;  4NDQ A;  2J5V A;  4Q1T A;  3C20 A;  4F6T A;  2VA1 A;  4NDQ B;  3D2M A;  4NDP B;  4NDO A;  2WXB A;  3WWM A;  3QUR A;  3S6G A;  3LKK A;  3D2P A;  2R8V A;  3ZZG A;  4JZ8 A;  4F6T B;  2BND A;  3ZZH A;  4NDO B;  2WE5 A;  2BTY A;  2CDQ A;  3QUN A;  4JZ9 A;  1OH9 A;  2RD5 A;  4JZ7 A;  2JI5 A;  2JJX A;  2IJ9 A;  2BRX A;  1GS5 A;  3AB4 A;  3TVI A;  1Z9D A;  3L76 A;  2BRI A;  2BUF A;  3LL9 A;  2J0W A;  2J4L A;  4A7W A;  2OGX A;  2V4Y A;  4I49 A;  3EK5 A;  3T7B A;  2J4J A;  2W21 A;  3QVH A;  2BMU A;  1YBD A;  3K56 A;  3S6H A;  1OHB A;  1B7B A;  3EK6 A;  2AKO A;  3K4Y A;  2AP9 A;  2J5T A;  1E19 A;  4AB7 A;  3S6K A;  2JJ4 A;  3AAW A;  4A7X A;  2BNF A;  3K52 A;  3L86 A;  3C1N A;  3U6U A;  4KZT A;  4USJ A;  3ZZI A;  3WWN A;  4NDR A;  4NDP A;  2WE4 A;  2V5H A;  3LL5 A;  2OGX B;  1GSJ A;  3AB2 A;  2J0X A;  4NDR B;  4OLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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