2J4JA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump and amppcp to 2.1 angstrom resolution
Total Genus 76
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
226
structure length
216
Chain Sequence
b'MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 76
structure length 216
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4jA00
2W21A 2J0WA 3QVHA 2R98A 2A1FA 3ZZGA 3S6GA 2J0XA 3ZZHA 4NDRA 3AB4A 3ZZFA 4F6TB 1GS5A 4JZ9A 2J5VA 2BMUA 4NDOB 1B7BA 3C1MA 3NWYA 4F6TA 2J4KA 3C20A 3K56A 1OHAA 3KZFA 2JJ4A 2E9YA 3QUOA 3D41A 3ZZIA 3L76A 4OLCA 3D2MA 2BNDA 3D2PA 4AXSA 3QURA 2JI5A 2JJXA 3AAWA 2WE5A 2OGXB 3TVIA 2BTYA 2BRXA 3L86A 2BNFA 3K52A 2HMFA 2R8VA 2OGXA 2RD5A 4JZ8A 2BRIA 1OH9A 2CDQA 3S6HA 3C1NA 1YBDA 3AB2A 2J4LA 4A7WA 2V5HA 4NDQA 3B8GA 4Q1TA 4KZTA 1GSJA 2WXBA 2J4JA 3EK5A 3QUNA 4USJA 3K4OA 4I49A 1Z9DA 3QVFA 4NDQB 3LL5A 3K4YA 2AKOA 4A7XA 4NDPB 4JZ7A 2J5TA 2V4YA 2X2WA 2BUFA 3EK6A 2IJ9A 4AB7A 3T7BA 3LL9A 3U6UA 3WWMA 4NDPA 2VA1A 2AP9A 3WWNA 1E19A 2BNEA 1OHBA 3S6KA 2WE4A 4NDRB 3LKKA 3D40A 4NDOA
chains in the Genus database with same CATH superfamily
2W21A 2J0WA 3QVHA 2R98A 2A1FA 3ZZGA 3S6GA 2J0XA 3ZZHA 4NDRA 3AB4A 3ZZFA 4F6TB 1GS5A 4JZ9A 2J5VA 2BMUA 4NDOB 1B7BA 3C1MA 3NWYA 4F6TA 2J4KA 3C20A 3K56A 1OHAA 3KZFA 2JJ4A 2E9YA 3QUOA 3D41A 3ZZIA 3L76A 4OLCA 3D2MA 2BNDA 3D2PA 4AXSA 3QURA 2JI5A 2JJXA 3AAWA 2WE5A 2OGXB 3TVIA 2BTYA 2BRXA 3L86A 2BNFA 3K52A 2HMFA 2R8VA 2OGXA 2RD5A 4JZ8A 2BRIA 1OH9A 2CDQA 3S6HA 3C1NA 1YBDA 3AB2A 2J4LA 4A7WA 2V5HA 4NDQA 3B8GA 4Q1TA 4KZTA 1GSJA 2WXBA 2J4JA 3EK5A 3QUNA 4USJA 3K4OA 4I49A 1Z9DA 3QVFA 4NDQB 3LL5A 3K4YA 2AKOA 4A7XA 4NDPB 4JZ7A 2J5TA 2V4YA 2X2WA 2BUFA 3EK6A 2IJ9A 4AB7A 3T7BA 3LL9A 3U6UA 3WWMA 4NDPA 2VA1A 2AP9A 3WWNA 1E19A 2BNEA 1OHBA 3S6KA 2WE4A 4NDRB 3LKKA 3D40A 4NDOA
chains in the Genus database with same CATH topology
2W21A 2J0WA 3QVHA 2R98A 2A1FA 3ZZGA 3S6GA 2J0XA 3ZZHA 4NDRA 3AB4A 3ZZFA 4F6TB 1GS5A 4JZ9A 2J5VA 2BMUA 4NDOB 1B7BA 3C1MA 3NWYA 4F6TA 2J4KA 3C20A 3K56A 1OHAA 3KZFA 2JJ4A 2E9YA 3QUOA 3D41A 3ZZIA 3L76A 4OLCA 3D2MA 2BNDA 3D2PA 4AXSA 3QURA 2JI5A 2JJXA 3AAWA 2WE5A 2OGXB 3TVIA 2BTYA 2BRXA 3L86A 2BNFA 3K52A 2HMFA 2R8VA 2OGXA 2RD5A 4JZ8A 2BRIA 1OH9A 2CDQA 3S6HA 3C1NA 1YBDA 3AB2A 2J4LA 4A7WA 2V5HA 4NDQA 3B8GA 4Q1TA 4KZTA 1GSJA 2WXBA 2J4JA 3EK5A 3QUNA 4USJA 3K4OA 4I49A 1Z9DA 3QVFA 4NDQB 3LL5A 3K4YA 2AKOA 4A7XA 4NDPB 4JZ7A 2J5TA 2V4YA 2X2WA 2BUFA 3EK6A 2IJ9A 4AB7A 3T7BA 3LL9A 3U6UA 3WWMA 4NDPA 2VA1A 2AP9A 3WWNA 1E19A 2BNEA 1OHBA 3S6KA 2WE4A 4NDRB 3LKKA 3D40A 4NDOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W21 A;  2J0W A;  3QVH A;  2R98 A;  2A1F A;  3ZZG A;  3S6G A;  2J0X A;  3ZZH A;  4NDR A;  3AB4 A;  3ZZF A;  4F6T B;  1GS5 A;  4JZ9 A;  2J5V A;  2BMU A;  4NDO B;  1B7B A;  3C1M A;  3NWY A;  4F6T A;  2J4K A;  3C20 A;  3K56 A;  1OHA A;  3KZF A;  2JJ4 A;  2E9Y A;  3QUO A;  3D41 A;  3ZZI A;  3L76 A;  4OLC A;  3D2M A;  2BND A;  3D2P A;  4AXS A;  3QUR A;  2JI5 A;  2JJX A;  3AAW A;  2WE5 A;  2OGX B;  3TVI A;  2BTY A;  2BRX A;  3L86 A;  2BNF A;  3K52 A;  2HMF A;  2R8V A;  2OGX A;  2RD5 A;  4JZ8 A;  2BRI A;  1OH9 A;  2CDQ A;  3S6H A;  3C1N A;  1YBD A;  3AB2 A;  2J4L A;  4A7W A;  2V5H A;  4NDQ A;  3B8G A;  4Q1T A;  4KZT A;  1GSJ A;  2WXB A;  2J4J A;  3EK5 A;  3QUN A;  4USJ A;  3K4O A;  4I49 A;  1Z9D A;  3QVF A;  4NDQ B;  3LL5 A;  3K4Y A;  2AKO A;  4A7X A;  4NDP B;  4JZ7 A;  2J5T A;  2V4Y A;  2X2W A;  2BUF A;  3EK6 A;  2IJ9 A;  4AB7 A;  3T7B A;  3LL9 A;  3U6U A;  3WWM A;  4NDP A;  2VA1 A;  2AP9 A;  3WWN A;  1E19 A;  2BNE A;  1OHB A;  3S6K A;  2WE4 A;  4NDR B;  3LKK A;  3D40 A;  4NDO A; 
#chains in the Genus database with same CATH topology
 2W21 A;  2J0W A;  3QVH A;  2R98 A;  2A1F A;  3ZZG A;  3S6G A;  2J0X A;  3ZZH A;  4NDR A;  3AB4 A;  3ZZF A;  4F6T B;  1GS5 A;  4JZ9 A;  2J5V A;  2BMU A;  4NDO B;  1B7B A;  3C1M A;  3NWY A;  4F6T A;  2J4K A;  3C20 A;  3K56 A;  1OHA A;  3KZF A;  2JJ4 A;  2E9Y A;  3QUO A;  3D41 A;  3ZZI A;  3L76 A;  4OLC A;  3D2M A;  2BND A;  3D2P A;  4AXS A;  3QUR A;  2JI5 A;  2JJX A;  3AAW A;  2WE5 A;  2OGX B;  3TVI A;  2BTY A;  2BRX A;  3L86 A;  2BNF A;  3K52 A;  2HMF A;  2R8V A;  2OGX A;  2RD5 A;  4JZ8 A;  2BRI A;  1OH9 A;  2CDQ A;  3S6H A;  3C1N A;  1YBD A;  3AB2 A;  2J4L A;  4A7W A;  2V5H A;  4NDQ A;  3B8G A;  4Q1T A;  4KZT A;  1GSJ A;  2WXB A;  2J4J A;  3EK5 A;  3QUN A;  4USJ A;  3K4O A;  4I49 A;  1Z9D A;  3QVF A;  4NDQ B;  3LL5 A;  3K4Y A;  2AKO A;  4A7X A;  4NDP B;  4JZ7 A;  2J5T A;  2V4Y A;  2X2W A;  2BUF A;  3EK6 A;  2IJ9 A;  4AB7 A;  3T7B A;  3LL9 A;  3U6U A;  3WWM A;  4NDP A;  2VA1 A;  2AP9 A;  3WWN A;  1E19 A;  2BNE A;  1OHB A;  3S6K A;  2WE4 A;  4NDR B;  3LKK A;  3D40 A;  4NDO A; 
#chains in the Genus database with same CATH homology
 2W21 A;  2J0W A;  3QVH A;  2R98 A;  2A1F A;  3ZZG A;  3S6G A;  2J0X A;  3ZZH A;  4NDR A;  3AB4 A;  3ZZF A;  4F6T B;  1GS5 A;  4JZ9 A;  2J5V A;  2BMU A;  4NDO B;  1B7B A;  3C1M A;  3NWY A;  4F6T A;  2J4K A;  3C20 A;  3K56 A;  1OHA A;  3KZF A;  2JJ4 A;  2E9Y A;  3QUO A;  3D41 A;  3ZZI A;  3L76 A;  4OLC A;  3D2M A;  2BND A;  3D2P A;  4AXS A;  3QUR A;  2JI5 A;  2JJX A;  3AAW A;  2WE5 A;  2OGX B;  3TVI A;  2BTY A;  2BRX A;  3L86 A;  2BNF A;  3K52 A;  2HMF A;  2R8V A;  2OGX A;  2RD5 A;  4JZ8 A;  2BRI A;  1OH9 A;  2CDQ A;  3S6H A;  3C1N A;  1YBD A;  3AB2 A;  2J4L A;  4A7W A;  2V5H A;  4NDQ A;  3B8G A;  4Q1T A;  4KZT A;  1GSJ A;  2WXB A;  2J4J A;  3EK5 A;  3QUN A;  4USJ A;  3K4O A;  4I49 A;  1Z9D A;  3QVF A;  4NDQ B;  3LL5 A;  3K4Y A;  2AKO A;  4A7X A;  4NDP B;  4JZ7 A;  2J5T A;  2V4Y A;  2X2W A;  2BUF A;  3EK6 A;  2IJ9 A;  4AB7 A;  3T7B A;  3LL9 A;  3U6U A;  3WWM A;  4NDP A;  2VA1 A;  2AP9 A;  3WWN A;  1E19 A;  2BNE A;  1OHB A;  3S6K A;  2WE4 A;  4NDR B;  3LKK A;  3D40 A;  4NDO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...