2E9YA

Crystal structure of project ape1968 from aeropyrum pernix k1
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
313
structure length
313
Chain Sequence
GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSLQAGTVVMLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title Crystal structure of project APE1968 from Aeropyrum pernix K1
rcsb
source organism Aeropyrum pernix
total genus 101
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2007-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2e9yA00
3K4OA 4NDQA 3K52A 1Z9DA 3LKKA 3K4YA 2V4YA 3QUOA 3KZFA 4NDOB 2CDQA 2WXBA 4NDOA 4OLCA 1OHAA 3ZZFA 2J4LA 2V5HA 2BNDA 2J4KA 2J0XA 4NDRA 2VA1A 4JZ9A 3EK5A 1GSJA 2W21A 2BUFA 3TVIA 4JZ8A 2BRXA 3QUNA 4NDPB 4USJA 4NDPA 2JJXA 2BNFA 3T7BA 4AB7A 2OGXB 2OGXA 3C1MA 3C1NA 3D40A 2J5VA 3EK6A 3U6UA 4JZ7A 2X2WA 3WWNA 3K56A 4A7XA 4I49A 2AP9A 2A1FA 3QVFA 2WE4A 3C20A 1OH9A 3L76A 3AB2A 2R98A 2WE5A 2BMUA 3ZZIA 3LL9A 2AKOA 1YBDA 3L86A 1OHBA 2BRIA 3B8GA 3AB4A 4F6TB 2J5TA 3NWYA 3LL5A 3ZZHA 3ZZGA 2BNEA 3AAWA 1GS5A 4KZTA 4NDQB 3S6KA 4F6TA 3WWMA 2HMFA 2J4JA 2R8VA 2IJ9A 4AXSA 4Q1TA 1B7BA 2RD5A 3QURA 3S6HA 4A7WA 2BTYA 2E9YA 3D41A 1E19A 2J0WA 3S6GA 3D2PA 3D2MA 4NDRB 2JI5A 3QVHA 2JJ4A
chains in the Genus database with same CATH superfamily
3K4OA 4NDQA 3K52A 1Z9DA 3LKKA 3K4YA 2V4YA 3QUOA 3KZFA 4NDOB 2CDQA 2WXBA 4NDOA 4OLCA 1OHAA 3ZZFA 2J4LA 2V5HA 2BNDA 2J4KA 2J0XA 4NDRA 2VA1A 4JZ9A 3EK5A 1GSJA 2W21A 2BUFA 3TVIA 4JZ8A 2BRXA 3QUNA 4NDPB 4USJA 4NDPA 2JJXA 2BNFA 3T7BA 4AB7A 2OGXB 2OGXA 3C1MA 3C1NA 3D40A 2J5VA 3EK6A 3U6UA 4JZ7A 2X2WA 3WWNA 3K56A 4A7XA 4I49A 2AP9A 2A1FA 3QVFA 2WE4A 3C20A 1OH9A 3L76A 3AB2A 2R98A 2WE5A 2BMUA 3ZZIA 3LL9A 2AKOA 1YBDA 3L86A 1OHBA 2BRIA 3B8GA 3AB4A 4F6TB 2J5TA 3NWYA 3LL5A 3ZZHA 3ZZGA 2BNEA 3AAWA 1GS5A 4KZTA 4NDQB 3S6KA 4F6TA 3WWMA 2HMFA 2J4JA 2R8VA 2IJ9A 4AXSA 4Q1TA 1B7BA 2RD5A 3QURA 3S6HA 4A7WA 2BTYA 2E9YA 3D41A 1E19A 2J0WA 3S6GA 3D2PA 3D2MA 4NDRB 2JI5A 3QVHA 2JJ4A
chains in the Genus database with same CATH topology
3K4OA 4NDQA 3K52A 1Z9DA 3LKKA 3K4YA 2V4YA 3QUOA 3KZFA 4NDOB 2CDQA 2WXBA 4NDOA 4OLCA 1OHAA 3ZZFA 2J4LA 2V5HA 2BNDA 2J4KA 2J0XA 4NDRA 2VA1A 4JZ9A 3EK5A 1GSJA 2W21A 2BUFA 3TVIA 4JZ8A 2BRXA 3QUNA 4NDPB 4USJA 4NDPA 2JJXA 2BNFA 3T7BA 4AB7A 2OGXB 2OGXA 3C1MA 3C1NA 3D40A 2J5VA 3EK6A 3U6UA 4JZ7A 2X2WA 3WWNA 3K56A 4A7XA 4I49A 2AP9A 2A1FA 3QVFA 2WE4A 3C20A 1OH9A 3L76A 3AB2A 2R98A 2WE5A 2BMUA 3ZZIA 3LL9A 2AKOA 1YBDA 3L86A 1OHBA 2BRIA 3B8GA 3AB4A 4F6TB 2J5TA 3NWYA 3LL5A 3ZZHA 3ZZGA 2BNEA 3AAWA 1GS5A 4KZTA 4NDQB 3S6KA 4F6TA 3WWMA 2HMFA 2J4JA 2R8VA 2IJ9A 4AXSA 4Q1TA 1B7BA 2RD5A 3QURA 3S6HA 4A7WA 2BTYA 2E9YA 3D41A 1E19A 2J0WA 3S6GA 3D2PA 3D2MA 4NDRB 2JI5A 3QVHA 2JJ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K4O A;  4NDQ A;  3K52 A;  1Z9D A;  3LKK A;  3K4Y A;  2V4Y A;  3QUO A;  3KZF A;  4NDO B;  2CDQ A;  2WXB A;  4NDO A;  4OLC A;  1OHA A;  3ZZF A;  2J4L A;  2V5H A;  2BND A;  2J4K A;  2J0X A;  4NDR A;  2VA1 A;  4JZ9 A;  3EK5 A;  1GSJ A;  2W21 A;  2BUF A;  3TVI A;  4JZ8 A;  2BRX A;  3QUN A;  4NDP B;  4USJ A;  4NDP A;  2JJX A;  2BNF A;  3T7B A;  4AB7 A;  2OGX B;  2OGX A;  3C1M A;  3C1N A;  3D40 A;  2J5V A;  3EK6 A;  3U6U A;  4JZ7 A;  2X2W A;  3WWN A;  3K56 A;  4A7X A;  4I49 A;  2AP9 A;  2A1F A;  3QVF A;  2WE4 A;  3C20 A;  1OH9 A;  3L76 A;  3AB2 A;  2R98 A;  2WE5 A;  2BMU A;  3ZZI A;  3LL9 A;  2AKO A;  1YBD A;  3L86 A;  1OHB A;  2BRI A;  3B8G A;  3AB4 A;  4F6T B;  2J5T A;  3NWY A;  3LL5 A;  3ZZH A;  3ZZG A;  2BNE A;  3AAW A;  1GS5 A;  4KZT A;  4NDQ B;  3S6K A;  4F6T A;  3WWM A;  2HMF A;  2J4J A;  2R8V A;  2IJ9 A;  4AXS A;  4Q1T A;  1B7B A;  2RD5 A;  3QUR A;  3S6H A;  4A7W A;  2BTY A;  2E9Y A;  3D41 A;  1E19 A;  2J0W A;  3S6G A;  3D2P A;  3D2M A;  4NDR B;  2JI5 A;  3QVH A;  2JJ4 A; 
#chains in the Genus database with same CATH topology
 3K4O A;  4NDQ A;  3K52 A;  1Z9D A;  3LKK A;  3K4Y A;  2V4Y A;  3QUO A;  3KZF A;  4NDO B;  2CDQ A;  2WXB A;  4NDO A;  4OLC A;  1OHA A;  3ZZF A;  2J4L A;  2V5H A;  2BND A;  2J4K A;  2J0X A;  4NDR A;  2VA1 A;  4JZ9 A;  3EK5 A;  1GSJ A;  2W21 A;  2BUF A;  3TVI A;  4JZ8 A;  2BRX A;  3QUN A;  4NDP B;  4USJ A;  4NDP A;  2JJX A;  2BNF A;  3T7B A;  4AB7 A;  2OGX B;  2OGX A;  3C1M A;  3C1N A;  3D40 A;  2J5V A;  3EK6 A;  3U6U A;  4JZ7 A;  2X2W A;  3WWN A;  3K56 A;  4A7X A;  4I49 A;  2AP9 A;  2A1F A;  3QVF A;  2WE4 A;  3C20 A;  1OH9 A;  3L76 A;  3AB2 A;  2R98 A;  2WE5 A;  2BMU A;  3ZZI A;  3LL9 A;  2AKO A;  1YBD A;  3L86 A;  1OHB A;  2BRI A;  3B8G A;  3AB4 A;  4F6T B;  2J5T A;  3NWY A;  3LL5 A;  3ZZH A;  3ZZG A;  2BNE A;  3AAW A;  1GS5 A;  4KZT A;  4NDQ B;  3S6K A;  4F6T A;  3WWM A;  2HMF A;  2J4J A;  2R8V A;  2IJ9 A;  4AXS A;  4Q1T A;  1B7B A;  2RD5 A;  3QUR A;  3S6H A;  4A7W A;  2BTY A;  2E9Y A;  3D41 A;  1E19 A;  2J0W A;  3S6G A;  3D2P A;  3D2M A;  4NDR B;  2JI5 A;  3QVH A;  2JJ4 A; 
#chains in the Genus database with same CATH homology
 3K4O A;  4NDQ A;  3K52 A;  1Z9D A;  3LKK A;  3K4Y A;  2V4Y A;  3QUO A;  3KZF A;  4NDO B;  2CDQ A;  2WXB A;  4NDO A;  4OLC A;  1OHA A;  3ZZF A;  2J4L A;  2V5H A;  2BND A;  2J4K A;  2J0X A;  4NDR A;  2VA1 A;  4JZ9 A;  3EK5 A;  1GSJ A;  2W21 A;  2BUF A;  3TVI A;  4JZ8 A;  2BRX A;  3QUN A;  4NDP B;  4USJ A;  4NDP A;  2JJX A;  2BNF A;  3T7B A;  4AB7 A;  2OGX B;  2OGX A;  3C1M A;  3C1N A;  3D40 A;  2J5V A;  3EK6 A;  3U6U A;  4JZ7 A;  2X2W A;  3WWN A;  3K56 A;  4A7X A;  4I49 A;  2AP9 A;  2A1F A;  3QVF A;  2WE4 A;  3C20 A;  1OH9 A;  3L76 A;  3AB2 A;  2R98 A;  2WE5 A;  2BMU A;  3ZZI A;  3LL9 A;  2AKO A;  1YBD A;  3L86 A;  1OHB A;  2BRI A;  3B8G A;  3AB4 A;  4F6T B;  2J5T A;  3NWY A;  3LL5 A;  3ZZH A;  3ZZG A;  2BNE A;  3AAW A;  1GS5 A;  4KZT A;  4NDQ B;  3S6K A;  4F6T A;  3WWM A;  2HMF A;  2J4J A;  2R8V A;  2IJ9 A;  4AXS A;  4Q1T A;  1B7B A;  2RD5 A;  3QUR A;  3S6H A;  4A7W A;  2BTY A;  2E9Y A;  3D41 A;  1E19 A;  2J0W A;  3S6G A;  3D2P A;  3D2M A;  4NDR B;  2JI5 A;  3QVH A;  2JJ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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