2E9YA

Crystal structure of project ape1968 from aeropyrum pernix k1
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
313
structure length
313
Chain Sequence
GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSLQAGTVVMLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal structure of project APE1968 from Aeropyrum pernix K1
rcsb
source organism Aeropyrum pernix
molecule tags Transferase
total genus 101
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2007-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2e9yA00
3ZZIA 2WXBA 3S6KA 3QUOA 3LL9A 3L86A 2AP9A 2X2WA 3AB4A 4I49A 2IJ9A 3K4YA 3L76A 4NDPB 2HMFA 4JZ9A 2JJXA 4JZ7A 4Q1TA 3NWYA 3U6UA 3D41A 2WE5A 4NDRB 2V5HA 3WWNA 1GS5A 2J4JA 3S6HA 3QVFA 3ZZGA 3K4OA 2R98A 3QUNA 4OLCA 2BRIA 4F6TA 1E19A 1OH9A 1OHBA 3C1NA 2AKOA 3EK6A 2CDQA 2J4LA 3LKKA 2J4KA 3D2PA 3K56A 2A1FA 3QURA 3LL5A 3C20A 4JZ8A 3D2MA 4AB7A 2W21A 1B7BA 2J0XA 3EK5A 3C1MA 2J5VA 2BTYA 3WWMA 2OGXA 4NDQA 3TVIA 4NDPA 4F6TB 2V4YA 4A7XA 2BNEA 2BNDA 4NDOA 2J0WA 2JJ4A 2BNFA 1GSJA 4NDRA 2BRXA 2JI5A 4KZTA 3D40A 2E9YA 3ZZHA 3KZFA 3K52A 2R8VA 2RD5A 2J5TA 1Z9DA 3AB2A 2OGXB 4NDQB 3QVHA 4AXSA 4NDOB 1OHAA 1YBDA 3T7BA 2BMUA 3S6GA 4A7WA 2WE4A 3B8GA 2BUFA 2VA1A 3AAWA 3ZZFA 4USJA
chains in the Genus database with same CATH superfamily
3ZZIA 2WXBA 3S6KA 3QUOA 3LL9A 3L86A 2AP9A 2X2WA 3AB4A 4I49A 2IJ9A 3K4YA 3L76A 4NDPB 2HMFA 4JZ9A 2JJXA 4JZ7A 4Q1TA 3NWYA 3U6UA 3D41A 2WE5A 4NDRB 2V5HA 3WWNA 1GS5A 2J4JA 3S6HA 3QVFA 3ZZGA 3K4OA 2R98A 3QUNA 4OLCA 2BRIA 4F6TA 1E19A 1OH9A 1OHBA 3C1NA 2AKOA 3EK6A 2CDQA 2J4LA 3LKKA 2J4KA 3D2PA 3K56A 2A1FA 3QURA 3LL5A 3C20A 4JZ8A 3D2MA 4AB7A 2W21A 1B7BA 2J0XA 3EK5A 3C1MA 2J5VA 2BTYA 3WWMA 2OGXA 4NDQA 3TVIA 4NDPA 4F6TB 2V4YA 4A7XA 2BNEA 2BNDA 4NDOA 2J0WA 2JJ4A 2BNFA 1GSJA 4NDRA 2BRXA 2JI5A 4KZTA 3D40A 2E9YA 3ZZHA 3KZFA 3K52A 2R8VA 2RD5A 2J5TA 1Z9DA 3AB2A 2OGXB 4NDQB 3QVHA 4AXSA 4NDOB 1OHAA 1YBDA 3T7BA 2BMUA 3S6GA 4A7WA 2WE4A 3B8GA 2BUFA 2VA1A 3AAWA 3ZZFA 4USJA
chains in the Genus database with same CATH topology
3ZZIA 2WXBA 3S6KA 3QUOA 3LL9A 3L86A 2AP9A 2X2WA 3AB4A 4I49A 2IJ9A 3K4YA 3L76A 4NDPB 2HMFA 4JZ9A 2JJXA 4JZ7A 4Q1TA 3NWYA 3U6UA 3D41A 2WE5A 4NDRB 2V5HA 3WWNA 1GS5A 2J4JA 3S6HA 3QVFA 3ZZGA 3K4OA 2R98A 3QUNA 4OLCA 2BRIA 4F6TA 1E19A 1OH9A 1OHBA 3C1NA 2AKOA 3EK6A 2CDQA 2J4LA 3LKKA 2J4KA 3D2PA 3K56A 2A1FA 3QURA 3LL5A 3C20A 4JZ8A 3D2MA 4AB7A 2W21A 1B7BA 2J0XA 3EK5A 3C1MA 2J5VA 2BTYA 3WWMA 2OGXA 4NDQA 3TVIA 4NDPA 4F6TB 2V4YA 4A7XA 2BNEA 2BNDA 4NDOA 2J0WA 2JJ4A 2BNFA 1GSJA 4NDRA 2BRXA 2JI5A 4KZTA 3D40A 2E9YA 3ZZHA 3KZFA 3K52A 2R8VA 2RD5A 2J5TA 1Z9DA 3AB2A 2OGXB 4NDQB 3QVHA 4AXSA 4NDOB 1OHAA 1YBDA 3T7BA 2BMUA 3S6GA 4A7WA 2WE4A 3B8GA 2BUFA 2VA1A 3AAWA 3ZZFA 4USJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZZI A;  2WXB A;  3S6K A;  3QUO A;  3LL9 A;  3L86 A;  2AP9 A;  2X2W A;  3AB4 A;  4I49 A;  2IJ9 A;  3K4Y A;  3L76 A;  4NDP B;  2HMF A;  4JZ9 A;  2JJX A;  4JZ7 A;  4Q1T A;  3NWY A;  3U6U A;  3D41 A;  2WE5 A;  4NDR B;  2V5H A;  3WWN A;  1GS5 A;  2J4J A;  3S6H A;  3QVF A;  3ZZG A;  3K4O A;  2R98 A;  3QUN A;  4OLC A;  2BRI A;  4F6T A;  1E19 A;  1OH9 A;  1OHB A;  3C1N A;  2AKO A;  3EK6 A;  2CDQ A;  2J4L A;  3LKK A;  2J4K A;  3D2P A;  3K56 A;  2A1F A;  3QUR A;  3LL5 A;  3C20 A;  4JZ8 A;  3D2M A;  4AB7 A;  2W21 A;  1B7B A;  2J0X A;  3EK5 A;  3C1M A;  2J5V A;  2BTY A;  3WWM A;  2OGX A;  4NDQ A;  3TVI A;  4NDP A;  4F6T B;  2V4Y A;  4A7X A;  2BNE A;  2BND A;  4NDO A;  2J0W A;  2JJ4 A;  2BNF A;  1GSJ A;  4NDR A;  2BRX A;  2JI5 A;  4KZT A;  3D40 A;  2E9Y A;  3ZZH A;  3KZF A;  3K52 A;  2R8V A;  2RD5 A;  2J5T A;  1Z9D A;  3AB2 A;  2OGX B;  4NDQ B;  3QVH A;  4AXS A;  4NDO B;  1OHA A;  1YBD A;  3T7B A;  2BMU A;  3S6G A;  4A7W A;  2WE4 A;  3B8G A;  2BUF A;  2VA1 A;  3AAW A;  3ZZF A;  4USJ A; 
#chains in the Genus database with same CATH topology
 3ZZI A;  2WXB A;  3S6K A;  3QUO A;  3LL9 A;  3L86 A;  2AP9 A;  2X2W A;  3AB4 A;  4I49 A;  2IJ9 A;  3K4Y A;  3L76 A;  4NDP B;  2HMF A;  4JZ9 A;  2JJX A;  4JZ7 A;  4Q1T A;  3NWY A;  3U6U A;  3D41 A;  2WE5 A;  4NDR B;  2V5H A;  3WWN A;  1GS5 A;  2J4J A;  3S6H A;  3QVF A;  3ZZG A;  3K4O A;  2R98 A;  3QUN A;  4OLC A;  2BRI A;  4F6T A;  1E19 A;  1OH9 A;  1OHB A;  3C1N A;  2AKO A;  3EK6 A;  2CDQ A;  2J4L A;  3LKK A;  2J4K A;  3D2P A;  3K56 A;  2A1F A;  3QUR A;  3LL5 A;  3C20 A;  4JZ8 A;  3D2M A;  4AB7 A;  2W21 A;  1B7B A;  2J0X A;  3EK5 A;  3C1M A;  2J5V A;  2BTY A;  3WWM A;  2OGX A;  4NDQ A;  3TVI A;  4NDP A;  4F6T B;  2V4Y A;  4A7X A;  2BNE A;  2BND A;  4NDO A;  2J0W A;  2JJ4 A;  2BNF A;  1GSJ A;  4NDR A;  2BRX A;  2JI5 A;  4KZT A;  3D40 A;  2E9Y A;  3ZZH A;  3KZF A;  3K52 A;  2R8V A;  2RD5 A;  2J5T A;  1Z9D A;  3AB2 A;  2OGX B;  4NDQ B;  3QVH A;  4AXS A;  4NDO B;  1OHA A;  1YBD A;  3T7B A;  2BMU A;  3S6G A;  4A7W A;  2WE4 A;  3B8G A;  2BUF A;  2VA1 A;  3AAW A;  3ZZF A;  4USJ A; 
#chains in the Genus database with same CATH homology
 3ZZI A;  2WXB A;  3S6K A;  3QUO A;  3LL9 A;  3L86 A;  2AP9 A;  2X2W A;  3AB4 A;  4I49 A;  2IJ9 A;  3K4Y A;  3L76 A;  4NDP B;  2HMF A;  4JZ9 A;  2JJX A;  4JZ7 A;  4Q1T A;  3NWY A;  3U6U A;  3D41 A;  2WE5 A;  4NDR B;  2V5H A;  3WWN A;  1GS5 A;  2J4J A;  3S6H A;  3QVF A;  3ZZG A;  3K4O A;  2R98 A;  3QUN A;  4OLC A;  2BRI A;  4F6T A;  1E19 A;  1OH9 A;  1OHB A;  3C1N A;  2AKO A;  3EK6 A;  2CDQ A;  2J4L A;  3LKK A;  2J4K A;  3D2P A;  3K56 A;  2A1F A;  3QUR A;  3LL5 A;  3C20 A;  4JZ8 A;  3D2M A;  4AB7 A;  2W21 A;  1B7B A;  2J0X A;  3EK5 A;  3C1M A;  2J5V A;  2BTY A;  3WWM A;  2OGX A;  4NDQ A;  3TVI A;  4NDP A;  4F6T B;  2V4Y A;  4A7X A;  2BNE A;  2BND A;  4NDO A;  2J0W A;  2JJ4 A;  2BNF A;  1GSJ A;  4NDR A;  2BRX A;  2JI5 A;  4KZT A;  3D40 A;  2E9Y A;  3ZZH A;  3KZF A;  3K52 A;  2R8V A;  2RD5 A;  2J5T A;  1Z9D A;  3AB2 A;  2OGX B;  4NDQ B;  3QVH A;  4AXS A;  4NDO B;  1OHA A;  1YBD A;  3T7B A;  2BMU A;  3S6G A;  4A7W A;  2WE4 A;  3B8G A;  2BUF A;  2VA1 A;  3AAW A;  3ZZF A;  4USJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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