2E9YA

Crystal structure of project ape1968 from aeropyrum pernix k1
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
313
structure length
313
Chain Sequence
b'GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSLQAGTVVMLG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal structure of project APE1968 from Aeropyrum pernix K1
rcsb
source organism Aeropyrum pernix
molecule tags Transferase
total genus 101
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2007-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2e9yA00
3L76A 2BUFA 2R98A 4KZTA 4A7XA 2J5TA 2J0XA 3C1MA 4NDRA 3NWYA 3AAWA 2BMUA 4A7WA 3S6HA 3LKKA 4F6TA 1OH9A 3C20A 2OGXA 3ZZIA 3QUOA 4NDRB 1GS5A 3QVHA 2V5HA 3AB2A 3D2PA 2BNEA 2BTYA 1GSJA 4F6TB 2OGXB 3D41A 2RD5A 3QVFA 2X2WA 3EK6A 3S6GA 4OLCA 2BNFA 3EK5A 2BRXA 4AXSA 2BNDA 2JI5A 4Q1TA 2J4JA 1OHAA 3C1NA 4JZ8A 3K4OA 3ZZGA 2J4LA 3U6UA 2VA1A 3WWNA 3S6KA 3ZZHA 3QUNA 3QURA 2JJ4A 3LL9A 2WE5A 2HMFA 3AB4A 3B8GA 4NDOB 4NDPA 2AP9A 1Z9DA 1OHBA 4NDQA 1B7BA 3TVIA 3K52A 2J5VA 2R8VA 2CDQA 4NDPB 2WE4A 2J4KA 3K4YA 4NDQB 2WXBA 4AB7A 3LL5A 4I49A 4USJA 2A1FA 2V4YA 1YBDA 1E19A 4JZ9A 2J0WA 4NDOA 2AKOA 2BRIA 2E9YA 3L86A 2IJ9A 2W21A 3D2MA 3KZFA 3ZZFA 3WWMA 3T7BA 2JJXA 3K56A 3D40A 4JZ7A
chains in the Genus database with same CATH superfamily
3L76A 2BUFA 2R98A 4KZTA 4A7XA 2J5TA 2J0XA 3C1MA 4NDRA 3NWYA 3AAWA 2BMUA 4A7WA 3S6HA 3LKKA 4F6TA 1OH9A 3C20A 2OGXA 3ZZIA 3QUOA 4NDRB 1GS5A 3QVHA 2V5HA 3AB2A 3D2PA 2BNEA 2BTYA 1GSJA 4F6TB 2OGXB 3D41A 2RD5A 3QVFA 2X2WA 3EK6A 3S6GA 4OLCA 2BNFA 3EK5A 2BRXA 4AXSA 2BNDA 2JI5A 4Q1TA 2J4JA 1OHAA 3C1NA 4JZ8A 3K4OA 3ZZGA 2J4LA 3U6UA 2VA1A 3WWNA 3S6KA 3ZZHA 3QUNA 3QURA 2JJ4A 3LL9A 2WE5A 2HMFA 3AB4A 3B8GA 4NDOB 4NDPA 2AP9A 1Z9DA 1OHBA 4NDQA 1B7BA 3TVIA 3K52A 2J5VA 2R8VA 2CDQA 4NDPB 2WE4A 2J4KA 3K4YA 4NDQB 2WXBA 4AB7A 3LL5A 4I49A 4USJA 2A1FA 2V4YA 1YBDA 1E19A 4JZ9A 2J0WA 4NDOA 2AKOA 2BRIA 2E9YA 3L86A 2IJ9A 2W21A 3D2MA 3KZFA 3ZZFA 3WWMA 3T7BA 2JJXA 3K56A 3D40A 4JZ7A
chains in the Genus database with same CATH topology
3L76A 2BUFA 2R98A 4KZTA 4A7XA 2J5TA 2J0XA 3C1MA 4NDRA 3NWYA 3AAWA 2BMUA 4A7WA 3S6HA 3LKKA 4F6TA 1OH9A 3C20A 2OGXA 3ZZIA 3QUOA 4NDRB 1GS5A 3QVHA 2V5HA 3AB2A 3D2PA 2BNEA 2BTYA 1GSJA 4F6TB 2OGXB 3D41A 2RD5A 3QVFA 2X2WA 3EK6A 3S6GA 4OLCA 2BNFA 3EK5A 2BRXA 4AXSA 2BNDA 2JI5A 4Q1TA 2J4JA 1OHAA 3C1NA 4JZ8A 3K4OA 3ZZGA 2J4LA 3U6UA 2VA1A 3WWNA 3S6KA 3ZZHA 3QUNA 3QURA 2JJ4A 3LL9A 2WE5A 2HMFA 3AB4A 3B8GA 4NDOB 4NDPA 2AP9A 1Z9DA 1OHBA 4NDQA 1B7BA 3TVIA 3K52A 2J5VA 2R8VA 2CDQA 4NDPB 2WE4A 2J4KA 3K4YA 4NDQB 2WXBA 4AB7A 3LL5A 4I49A 4USJA 2A1FA 2V4YA 1YBDA 1E19A 4JZ9A 2J0WA 4NDOA 2AKOA 2BRIA 2E9YA 3L86A 2IJ9A 2W21A 3D2MA 3KZFA 3ZZFA 3WWMA 3T7BA 2JJXA 3K56A 3D40A 4JZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L76 A;  2BUF A;  2R98 A;  4KZT A;  4A7X A;  2J5T A;  2J0X A;  3C1M A;  4NDR A;  3NWY A;  3AAW A;  2BMU A;  4A7W A;  3S6H A;  3LKK A;  4F6T A;  1OH9 A;  3C20 A;  2OGX A;  3ZZI A;  3QUO A;  4NDR B;  1GS5 A;  3QVH A;  2V5H A;  3AB2 A;  3D2P A;  2BNE A;  2BTY A;  1GSJ A;  4F6T B;  2OGX B;  3D41 A;  2RD5 A;  3QVF A;  2X2W A;  3EK6 A;  3S6G A;  4OLC A;  2BNF A;  3EK5 A;  2BRX A;  4AXS A;  2BND A;  2JI5 A;  4Q1T A;  2J4J A;  1OHA A;  3C1N A;  4JZ8 A;  3K4O A;  3ZZG A;  2J4L A;  3U6U A;  2VA1 A;  3WWN A;  3S6K A;  3ZZH A;  3QUN A;  3QUR A;  2JJ4 A;  3LL9 A;  2WE5 A;  2HMF A;  3AB4 A;  3B8G A;  4NDO B;  4NDP A;  2AP9 A;  1Z9D A;  1OHB A;  4NDQ A;  1B7B A;  3TVI A;  3K52 A;  2J5V A;  2R8V A;  2CDQ A;  4NDP B;  2WE4 A;  2J4K A;  3K4Y A;  4NDQ B;  2WXB A;  4AB7 A;  3LL5 A;  4I49 A;  4USJ A;  2A1F A;  2V4Y A;  1YBD A;  1E19 A;  4JZ9 A;  2J0W A;  4NDO A;  2AKO A;  2BRI A;  2E9Y A;  3L86 A;  2IJ9 A;  2W21 A;  3D2M A;  3KZF A;  3ZZF A;  3WWM A;  3T7B A;  2JJX A;  3K56 A;  3D40 A;  4JZ7 A; 
#chains in the Genus database with same CATH topology
 3L76 A;  2BUF A;  2R98 A;  4KZT A;  4A7X A;  2J5T A;  2J0X A;  3C1M A;  4NDR A;  3NWY A;  3AAW A;  2BMU A;  4A7W A;  3S6H A;  3LKK A;  4F6T A;  1OH9 A;  3C20 A;  2OGX A;  3ZZI A;  3QUO A;  4NDR B;  1GS5 A;  3QVH A;  2V5H A;  3AB2 A;  3D2P A;  2BNE A;  2BTY A;  1GSJ A;  4F6T B;  2OGX B;  3D41 A;  2RD5 A;  3QVF A;  2X2W A;  3EK6 A;  3S6G A;  4OLC A;  2BNF A;  3EK5 A;  2BRX A;  4AXS A;  2BND A;  2JI5 A;  4Q1T A;  2J4J A;  1OHA A;  3C1N A;  4JZ8 A;  3K4O A;  3ZZG A;  2J4L A;  3U6U A;  2VA1 A;  3WWN A;  3S6K A;  3ZZH A;  3QUN A;  3QUR A;  2JJ4 A;  3LL9 A;  2WE5 A;  2HMF A;  3AB4 A;  3B8G A;  4NDO B;  4NDP A;  2AP9 A;  1Z9D A;  1OHB A;  4NDQ A;  1B7B A;  3TVI A;  3K52 A;  2J5V A;  2R8V A;  2CDQ A;  4NDP B;  2WE4 A;  2J4K A;  3K4Y A;  4NDQ B;  2WXB A;  4AB7 A;  3LL5 A;  4I49 A;  4USJ A;  2A1F A;  2V4Y A;  1YBD A;  1E19 A;  4JZ9 A;  2J0W A;  4NDO A;  2AKO A;  2BRI A;  2E9Y A;  3L86 A;  2IJ9 A;  2W21 A;  3D2M A;  3KZF A;  3ZZF A;  3WWM A;  3T7B A;  2JJX A;  3K56 A;  3D40 A;  4JZ7 A; 
#chains in the Genus database with same CATH homology
 3L76 A;  2BUF A;  2R98 A;  4KZT A;  4A7X A;  2J5T A;  2J0X A;  3C1M A;  4NDR A;  3NWY A;  3AAW A;  2BMU A;  4A7W A;  3S6H A;  3LKK A;  4F6T A;  1OH9 A;  3C20 A;  2OGX A;  3ZZI A;  3QUO A;  4NDR B;  1GS5 A;  3QVH A;  2V5H A;  3AB2 A;  3D2P A;  2BNE A;  2BTY A;  1GSJ A;  4F6T B;  2OGX B;  3D41 A;  2RD5 A;  3QVF A;  2X2W A;  3EK6 A;  3S6G A;  4OLC A;  2BNF A;  3EK5 A;  2BRX A;  4AXS A;  2BND A;  2JI5 A;  4Q1T A;  2J4J A;  1OHA A;  3C1N A;  4JZ8 A;  3K4O A;  3ZZG A;  2J4L A;  3U6U A;  2VA1 A;  3WWN A;  3S6K A;  3ZZH A;  3QUN A;  3QUR A;  2JJ4 A;  3LL9 A;  2WE5 A;  2HMF A;  3AB4 A;  3B8G A;  4NDO B;  4NDP A;  2AP9 A;  1Z9D A;  1OHB A;  4NDQ A;  1B7B A;  3TVI A;  3K52 A;  2J5V A;  2R8V A;  2CDQ A;  4NDP B;  2WE4 A;  2J4K A;  3K4Y A;  4NDQ B;  2WXB A;  4AB7 A;  3LL5 A;  4I49 A;  4USJ A;  2A1F A;  2V4Y A;  1YBD A;  1E19 A;  4JZ9 A;  2J0W A;  4NDO A;  2AKO A;  2BRI A;  2E9Y A;  3L86 A;  2IJ9 A;  2W21 A;  3D2M A;  3KZF A;  3ZZF A;  3WWM A;  3T7B A;  2JJX A;  3K56 A;  3D40 A;  4JZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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