4NDPA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
total genus 78
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndpA00
2BNEA 2RD5A 3TVIA 3C20A 3QUOA 3LL5A 3B8GA 3K4OA 4KZTA 3S6KA 4A7XA 3ZZHA 4F6TB 1OHBA 2J5TA 3L76A 3K4YA 4A7WA 3L86A 2JJ4A 4AB7A 2AP9A 3QURA 2J4LA 2J4JA 2BMUA 3LKKA 4F6TA 2WXBA 4USJA 3K56A 2WE4A 2CDQA 4NDQB 3C1MA 3EK5A 1B7BA 3AB2A 4NDOB 3ZZIA 1GSJA 3ZZFA 4I49A 1YBDA 2BNFA 2JJXA 3NWYA 2J5VA 4NDRB 4NDQA 2WE5A 3WWNA 2VA1A 4NDPB 3QVFA 4NDOA 2J0XA 2A1FA 4JZ8A 3LL9A 3D41A 3D2MA 2JI5A 4NDRA 4JZ7A 2AKOA 2BRXA 4AXSA 4JZ9A 2OGXB 3D2PA 3ZZGA 3K52A 2BRIA 3D40A 3AAWA 3EK6A 2BTYA 2R8VA 3KZFA 2W21A 2HMFA 3QUNA 3C1NA 2BUFA 2J0WA 2OGXA 4OLCA 1GS5A 3U6UA 2V5HA 2J4KA 3T7BA 2V4YA 2IJ9A 3S6GA 4Q1TA 1OHAA 4NDPA 1Z9DA 1E19A 2BNDA 3QVHA 2X2WA 3AB4A 2E9YA 2R98A 3WWMA 1OH9A 3S6HA
chains in the Genus database with same CATH superfamily
2BNEA 2RD5A 3TVIA 3C20A 3QUOA 3LL5A 3B8GA 3K4OA 4KZTA 3S6KA 4A7XA 3ZZHA 4F6TB 1OHBA 2J5TA 3L76A 3K4YA 4A7WA 3L86A 2JJ4A 4AB7A 2AP9A 3QURA 2J4LA 2J4JA 2BMUA 3LKKA 4F6TA 2WXBA 4USJA 3K56A 2WE4A 2CDQA 4NDQB 3C1MA 3EK5A 1B7BA 3AB2A 4NDOB 3ZZIA 1GSJA 3ZZFA 4I49A 1YBDA 2BNFA 2JJXA 3NWYA 2J5VA 4NDRB 4NDQA 2WE5A 3WWNA 2VA1A 4NDPB 3QVFA 4NDOA 2J0XA 2A1FA 4JZ8A 3LL9A 3D41A 3D2MA 2JI5A 4NDRA 4JZ7A 2AKOA 2BRXA 4AXSA 4JZ9A 2OGXB 3D2PA 3ZZGA 3K52A 2BRIA 3D40A 3AAWA 3EK6A 2BTYA 2R8VA 3KZFA 2W21A 2HMFA 3QUNA 3C1NA 2BUFA 2J0WA 2OGXA 4OLCA 1GS5A 3U6UA 2V5HA 2J4KA 3T7BA 2V4YA 2IJ9A 3S6GA 4Q1TA 1OHAA 4NDPA 1Z9DA 1E19A 2BNDA 3QVHA 2X2WA 3AB4A 2E9YA 2R98A 3WWMA 1OH9A 3S6HA
chains in the Genus database with same CATH topology
2BNEA 2RD5A 3TVIA 3C20A 3QUOA 3LL5A 3B8GA 3K4OA 4KZTA 3S6KA 4A7XA 3ZZHA 4F6TB 1OHBA 2J5TA 3L76A 3K4YA 4A7WA 3L86A 2JJ4A 4AB7A 2AP9A 3QURA 2J4LA 2J4JA 2BMUA 3LKKA 4F6TA 2WXBA 4USJA 3K56A 2WE4A 2CDQA 4NDQB 3C1MA 3EK5A 1B7BA 3AB2A 4NDOB 3ZZIA 1GSJA 3ZZFA 4I49A 1YBDA 2BNFA 2JJXA 3NWYA 2J5VA 4NDRB 4NDQA 2WE5A 3WWNA 2VA1A 4NDPB 3QVFA 4NDOA 2J0XA 2A1FA 4JZ8A 3LL9A 3D41A 3D2MA 2JI5A 4NDRA 4JZ7A 2AKOA 2BRXA 4AXSA 4JZ9A 2OGXB 3D2PA 3ZZGA 3K52A 2BRIA 3D40A 3AAWA 3EK6A 2BTYA 2R8VA 3KZFA 2W21A 2HMFA 3QUNA 3C1NA 2BUFA 2J0WA 2OGXA 4OLCA 1GS5A 3U6UA 2V5HA 2J4KA 3T7BA 2V4YA 2IJ9A 3S6GA 4Q1TA 1OHAA 4NDPA 1Z9DA 1E19A 2BNDA 3QVHA 2X2WA 3AB4A 2E9YA 2R98A 3WWMA 1OH9A 3S6HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BNE A;  2RD5 A;  3TVI A;  3C20 A;  3QUO A;  3LL5 A;  3B8G A;  3K4O A;  4KZT A;  3S6K A;  4A7X A;  3ZZH A;  4F6T B;  1OHB A;  2J5T A;  3L76 A;  3K4Y A;  4A7W A;  3L86 A;  2JJ4 A;  4AB7 A;  2AP9 A;  3QUR A;  2J4L A;  2J4J A;  2BMU A;  3LKK A;  4F6T A;  2WXB A;  4USJ A;  3K56 A;  2WE4 A;  2CDQ A;  4NDQ B;  3C1M A;  3EK5 A;  1B7B A;  3AB2 A;  4NDO B;  3ZZI A;  1GSJ A;  3ZZF A;  4I49 A;  1YBD A;  2BNF A;  2JJX A;  3NWY A;  2J5V A;  4NDR B;  4NDQ A;  2WE5 A;  3WWN A;  2VA1 A;  4NDP B;  3QVF A;  4NDO A;  2J0X A;  2A1F A;  4JZ8 A;  3LL9 A;  3D41 A;  3D2M A;  2JI5 A;  4NDR A;  4JZ7 A;  2AKO A;  2BRX A;  4AXS A;  4JZ9 A;  2OGX B;  3D2P A;  3ZZG A;  3K52 A;  2BRI A;  3D40 A;  3AAW A;  3EK6 A;  2BTY A;  2R8V A;  3KZF A;  2W21 A;  2HMF A;  3QUN A;  3C1N A;  2BUF A;  2J0W A;  2OGX A;  4OLC A;  1GS5 A;  3U6U A;  2V5H A;  2J4K A;  3T7B A;  2V4Y A;  2IJ9 A;  3S6G A;  4Q1T A;  1OHA A;  4NDP A;  1Z9D A;  1E19 A;  2BND A;  3QVH A;  2X2W A;  3AB4 A;  2E9Y A;  2R98 A;  3WWM A;  1OH9 A;  3S6H A; 
#chains in the Genus database with same CATH topology
 2BNE A;  2RD5 A;  3TVI A;  3C20 A;  3QUO A;  3LL5 A;  3B8G A;  3K4O A;  4KZT A;  3S6K A;  4A7X A;  3ZZH A;  4F6T B;  1OHB A;  2J5T A;  3L76 A;  3K4Y A;  4A7W A;  3L86 A;  2JJ4 A;  4AB7 A;  2AP9 A;  3QUR A;  2J4L A;  2J4J A;  2BMU A;  3LKK A;  4F6T A;  2WXB A;  4USJ A;  3K56 A;  2WE4 A;  2CDQ A;  4NDQ B;  3C1M A;  3EK5 A;  1B7B A;  3AB2 A;  4NDO B;  3ZZI A;  1GSJ A;  3ZZF A;  4I49 A;  1YBD A;  2BNF A;  2JJX A;  3NWY A;  2J5V A;  4NDR B;  4NDQ A;  2WE5 A;  3WWN A;  2VA1 A;  4NDP B;  3QVF A;  4NDO A;  2J0X A;  2A1F A;  4JZ8 A;  3LL9 A;  3D41 A;  3D2M A;  2JI5 A;  4NDR A;  4JZ7 A;  2AKO A;  2BRX A;  4AXS A;  4JZ9 A;  2OGX B;  3D2P A;  3ZZG A;  3K52 A;  2BRI A;  3D40 A;  3AAW A;  3EK6 A;  2BTY A;  2R8V A;  3KZF A;  2W21 A;  2HMF A;  3QUN A;  3C1N A;  2BUF A;  2J0W A;  2OGX A;  4OLC A;  1GS5 A;  3U6U A;  2V5H A;  2J4K A;  3T7B A;  2V4Y A;  2IJ9 A;  3S6G A;  4Q1T A;  1OHA A;  4NDP A;  1Z9D A;  1E19 A;  2BND A;  3QVH A;  2X2W A;  3AB4 A;  2E9Y A;  2R98 A;  3WWM A;  1OH9 A;  3S6H A; 
#chains in the Genus database with same CATH homology
 2BNE A;  2RD5 A;  3TVI A;  3C20 A;  3QUO A;  3LL5 A;  3B8G A;  3K4O A;  4KZT A;  3S6K A;  4A7X A;  3ZZH A;  4F6T B;  1OHB A;  2J5T A;  3L76 A;  3K4Y A;  4A7W A;  3L86 A;  2JJ4 A;  4AB7 A;  2AP9 A;  3QUR A;  2J4L A;  2J4J A;  2BMU A;  3LKK A;  4F6T A;  2WXB A;  4USJ A;  3K56 A;  2WE4 A;  2CDQ A;  4NDQ B;  3C1M A;  3EK5 A;  1B7B A;  3AB2 A;  4NDO B;  3ZZI A;  1GSJ A;  3ZZF A;  4I49 A;  1YBD A;  2BNF A;  2JJX A;  3NWY A;  2J5V A;  4NDR B;  4NDQ A;  2WE5 A;  3WWN A;  2VA1 A;  4NDP B;  3QVF A;  4NDO A;  2J0X A;  2A1F A;  4JZ8 A;  3LL9 A;  3D41 A;  3D2M A;  2JI5 A;  4NDR A;  4JZ7 A;  2AKO A;  2BRX A;  4AXS A;  4JZ9 A;  2OGX B;  3D2P A;  3ZZG A;  3K52 A;  2BRI A;  3D40 A;  3AAW A;  3EK6 A;  2BTY A;  2R8V A;  3KZF A;  2W21 A;  2HMF A;  3QUN A;  3C1N A;  2BUF A;  2J0W A;  2OGX A;  4OLC A;  1GS5 A;  3U6U A;  2V5H A;  2J4K A;  3T7B A;  2V4Y A;  2IJ9 A;  3S6G A;  4Q1T A;  1OHA A;  4NDP A;  1Z9D A;  1E19 A;  2BND A;  3QVH A;  2X2W A;  3AB4 A;  2E9Y A;  2R98 A;  3WWM A;  1OH9 A;  3S6H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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