4NDPA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
total genus 78
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndpA00
2CDQA 3K4OA 4JZ7A 3S6GA 1OHAA 2VA1A 3D41A 3QURA 3AB4A 3D40A 2R98A 2OGXA 2JJXA 2J5VA 3S6HA 2HMFA 3ZZGA 3D2PA 3K56A 3L86A 2V4YA 2BNFA 2J5TA 3K4YA 3QVFA 2A1FA 4AB7A 1OH9A 2BRIA 2E9YA 4NDRB 4F6TB 4KZTA 4NDOB 1E19A 4A7WA 3EK6A 2WXBA 3ZZFA 2X2WA 2BNEA 2R8VA 3B8GA 2J0XA 3QVHA 2J0WA 3C1MA 3ZZIA 3ZZHA 3D2MA 3KZFA 3S6KA 2J4KA 1Z9DA 3K52A 4NDRA 2V5HA 4F6TA 4JZ9A 4OLCA 4NDOA 3AB2A 4AXSA 2AP9A 3QUOA 1OHBA 4JZ8A 2BTYA 2RD5A 3WWNA 2W21A 2BNDA 2WE5A 4NDQB 4I49A 3EK5A 3QUNA 2AKOA 2IJ9A 4A7XA 2BMUA 3NWYA 1GS5A 2BRXA 3L76A 1YBDA 3C20A 1B7BA 2JI5A 4NDPB 2J4LA 3TVIA 4NDQA 2J4JA 2BUFA 3T7BA 3WWMA 4USJA 3U6UA 2OGXB 3LL5A 3C1NA 2JJ4A 3LKKA 2WE4A 4NDPA 3LL9A 4Q1TA 1GSJA 3AAWA
chains in the Genus database with same CATH superfamily
2CDQA 3K4OA 4JZ7A 3S6GA 1OHAA 2VA1A 3D41A 3QURA 3AB4A 3D40A 2R98A 2OGXA 2JJXA 2J5VA 3S6HA 2HMFA 3ZZGA 3D2PA 3K56A 3L86A 2V4YA 2BNFA 2J5TA 3K4YA 3QVFA 2A1FA 4AB7A 1OH9A 2BRIA 2E9YA 4NDRB 4F6TB 4KZTA 4NDOB 1E19A 4A7WA 3EK6A 2WXBA 3ZZFA 2X2WA 2BNEA 2R8VA 3B8GA 2J0XA 3QVHA 2J0WA 3C1MA 3ZZIA 3ZZHA 3D2MA 3KZFA 3S6KA 2J4KA 1Z9DA 3K52A 4NDRA 2V5HA 4F6TA 4JZ9A 4OLCA 4NDOA 3AB2A 4AXSA 2AP9A 3QUOA 1OHBA 4JZ8A 2BTYA 2RD5A 3WWNA 2W21A 2BNDA 2WE5A 4NDQB 4I49A 3EK5A 3QUNA 2AKOA 2IJ9A 4A7XA 2BMUA 3NWYA 1GS5A 2BRXA 3L76A 1YBDA 3C20A 1B7BA 2JI5A 4NDPB 2J4LA 3TVIA 4NDQA 2J4JA 2BUFA 3T7BA 3WWMA 4USJA 3U6UA 2OGXB 3LL5A 3C1NA 2JJ4A 3LKKA 2WE4A 4NDPA 3LL9A 4Q1TA 1GSJA 3AAWA
chains in the Genus database with same CATH topology
2CDQA 3K4OA 4JZ7A 3S6GA 1OHAA 2VA1A 3D41A 3QURA 3AB4A 3D40A 2R98A 2OGXA 2JJXA 2J5VA 3S6HA 2HMFA 3ZZGA 3D2PA 3K56A 3L86A 2V4YA 2BNFA 2J5TA 3K4YA 3QVFA 2A1FA 4AB7A 1OH9A 2BRIA 2E9YA 4NDRB 4F6TB 4KZTA 4NDOB 1E19A 4A7WA 3EK6A 2WXBA 3ZZFA 2X2WA 2BNEA 2R8VA 3B8GA 2J0XA 3QVHA 2J0WA 3C1MA 3ZZIA 3ZZHA 3D2MA 3KZFA 3S6KA 2J4KA 1Z9DA 3K52A 4NDRA 2V5HA 4F6TA 4JZ9A 4OLCA 4NDOA 3AB2A 4AXSA 2AP9A 3QUOA 1OHBA 4JZ8A 2BTYA 2RD5A 3WWNA 2W21A 2BNDA 2WE5A 4NDQB 4I49A 3EK5A 3QUNA 2AKOA 2IJ9A 4A7XA 2BMUA 3NWYA 1GS5A 2BRXA 3L76A 1YBDA 3C20A 1B7BA 2JI5A 4NDPB 2J4LA 3TVIA 4NDQA 2J4JA 2BUFA 3T7BA 3WWMA 4USJA 3U6UA 2OGXB 3LL5A 3C1NA 2JJ4A 3LKKA 2WE4A 4NDPA 3LL9A 4Q1TA 1GSJA 3AAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CDQ A;  3K4O A;  4JZ7 A;  3S6G A;  1OHA A;  2VA1 A;  3D41 A;  3QUR A;  3AB4 A;  3D40 A;  2R98 A;  2OGX A;  2JJX A;  2J5V A;  3S6H A;  2HMF A;  3ZZG A;  3D2P A;  3K56 A;  3L86 A;  2V4Y A;  2BNF A;  2J5T A;  3K4Y A;  3QVF A;  2A1F A;  4AB7 A;  1OH9 A;  2BRI A;  2E9Y A;  4NDR B;  4F6T B;  4KZT A;  4NDO B;  1E19 A;  4A7W A;  3EK6 A;  2WXB A;  3ZZF A;  2X2W A;  2BNE A;  2R8V A;  3B8G A;  2J0X A;  3QVH A;  2J0W A;  3C1M A;  3ZZI A;  3ZZH A;  3D2M A;  3KZF A;  3S6K A;  2J4K A;  1Z9D A;  3K52 A;  4NDR A;  2V5H A;  4F6T A;  4JZ9 A;  4OLC A;  4NDO A;  3AB2 A;  4AXS A;  2AP9 A;  3QUO A;  1OHB A;  4JZ8 A;  2BTY A;  2RD5 A;  3WWN A;  2W21 A;  2BND A;  2WE5 A;  4NDQ B;  4I49 A;  3EK5 A;  3QUN A;  2AKO A;  2IJ9 A;  4A7X A;  2BMU A;  3NWY A;  1GS5 A;  2BRX A;  3L76 A;  1YBD A;  3C20 A;  1B7B A;  2JI5 A;  4NDP B;  2J4L A;  3TVI A;  4NDQ A;  2J4J A;  2BUF A;  3T7B A;  3WWM A;  4USJ A;  3U6U A;  2OGX B;  3LL5 A;  3C1N A;  2JJ4 A;  3LKK A;  2WE4 A;  4NDP A;  3LL9 A;  4Q1T A;  1GSJ A;  3AAW A; 
#chains in the Genus database with same CATH topology
 2CDQ A;  3K4O A;  4JZ7 A;  3S6G A;  1OHA A;  2VA1 A;  3D41 A;  3QUR A;  3AB4 A;  3D40 A;  2R98 A;  2OGX A;  2JJX A;  2J5V A;  3S6H A;  2HMF A;  3ZZG A;  3D2P A;  3K56 A;  3L86 A;  2V4Y A;  2BNF A;  2J5T A;  3K4Y A;  3QVF A;  2A1F A;  4AB7 A;  1OH9 A;  2BRI A;  2E9Y A;  4NDR B;  4F6T B;  4KZT A;  4NDO B;  1E19 A;  4A7W A;  3EK6 A;  2WXB A;  3ZZF A;  2X2W A;  2BNE A;  2R8V A;  3B8G A;  2J0X A;  3QVH A;  2J0W A;  3C1M A;  3ZZI A;  3ZZH A;  3D2M A;  3KZF A;  3S6K A;  2J4K A;  1Z9D A;  3K52 A;  4NDR A;  2V5H A;  4F6T A;  4JZ9 A;  4OLC A;  4NDO A;  3AB2 A;  4AXS A;  2AP9 A;  3QUO A;  1OHB A;  4JZ8 A;  2BTY A;  2RD5 A;  3WWN A;  2W21 A;  2BND A;  2WE5 A;  4NDQ B;  4I49 A;  3EK5 A;  3QUN A;  2AKO A;  2IJ9 A;  4A7X A;  2BMU A;  3NWY A;  1GS5 A;  2BRX A;  3L76 A;  1YBD A;  3C20 A;  1B7B A;  2JI5 A;  4NDP B;  2J4L A;  3TVI A;  4NDQ A;  2J4J A;  2BUF A;  3T7B A;  3WWM A;  4USJ A;  3U6U A;  2OGX B;  3LL5 A;  3C1N A;  2JJ4 A;  3LKK A;  2WE4 A;  4NDP A;  3LL9 A;  4Q1T A;  1GSJ A;  3AAW A; 
#chains in the Genus database with same CATH homology
 2CDQ A;  3K4O A;  4JZ7 A;  3S6G A;  1OHA A;  2VA1 A;  3D41 A;  3QUR A;  3AB4 A;  3D40 A;  2R98 A;  2OGX A;  2JJX A;  2J5V A;  3S6H A;  2HMF A;  3ZZG A;  3D2P A;  3K56 A;  3L86 A;  2V4Y A;  2BNF A;  2J5T A;  3K4Y A;  3QVF A;  2A1F A;  4AB7 A;  1OH9 A;  2BRI A;  2E9Y A;  4NDR B;  4F6T B;  4KZT A;  4NDO B;  1E19 A;  4A7W A;  3EK6 A;  2WXB A;  3ZZF A;  2X2W A;  2BNE A;  2R8V A;  3B8G A;  2J0X A;  3QVH A;  2J0W A;  3C1M A;  3ZZI A;  3ZZH A;  3D2M A;  3KZF A;  3S6K A;  2J4K A;  1Z9D A;  3K52 A;  4NDR A;  2V5H A;  4F6T A;  4JZ9 A;  4OLC A;  4NDO A;  3AB2 A;  4AXS A;  2AP9 A;  3QUO A;  1OHB A;  4JZ8 A;  2BTY A;  2RD5 A;  3WWN A;  2W21 A;  2BND A;  2WE5 A;  4NDQ B;  4I49 A;  3EK5 A;  3QUN A;  2AKO A;  2IJ9 A;  4A7X A;  2BMU A;  3NWY A;  1GS5 A;  2BRX A;  3L76 A;  1YBD A;  3C20 A;  1B7B A;  2JI5 A;  4NDP B;  2J4L A;  3TVI A;  4NDQ A;  2J4J A;  2BUF A;  3T7B A;  3WWM A;  4USJ A;  3U6U A;  2OGX B;  3LL5 A;  3C1N A;  2JJ4 A;  3LKK A;  2WE4 A;  4NDP A;  3LL9 A;  4Q1T A;  1GSJ A;  3AAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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