4NDPA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
total genus 78
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndpA00
2X2WA 2JJXA 4USJA 3QUNA 3QURA 2BNFA 2BMUA 4NDQB 2WE4A 4OLCA 4NDRB 1E19A 3B8GA 3T7BA 1Z9DA 4A7WA 1OHBA 1GSJA 2J5TA 3D2MA 2J0XA 4F6TB 2AKOA 4NDOB 1GS5A 2BNDA 2J4LA 1B7BA 3S6KA 3QUOA 2E9YA 4A7XA 3TVIA 3QVFA 3EK5A 2OGXA 2W21A 3K4YA 4NDPA 3S6HA 3D40A 4I49A 3D2PA 3LL9A 2HMFA 2WE5A 3QVHA 3ZZFA 2J4JA 3NWYA 3K56A 3S6GA 3ZZGA 2BRXA 3EK6A 2RD5A 3U6UA 3L86A 3ZZHA 4JZ9A 2R8VA 4AXSA 2JI5A 3K52A 4KZTA 2BTYA 3WWMA 3ZZIA 3AB2A 3D41A 3C1NA 4NDQA 3KZFA 2A1FA 3L76A 4Q1TA 4NDRA 2CDQA 2BRIA 2VA1A 2J4KA 2BUFA 2OGXB 4NDPB 3K4OA 2J5VA 2V4YA 1OH9A 1YBDA 2J0WA 4F6TA 2V5HA 4NDOA 3LL5A 3C20A 3WWNA 2R98A 3C1MA 2IJ9A 2WXBA 3AAWA 4JZ7A 2JJ4A 4AB7A 3LKKA 2BNEA 2AP9A 1OHAA 3AB4A 4JZ8A
chains in the Genus database with same CATH superfamily
2X2WA 2JJXA 4USJA 3QUNA 3QURA 2BNFA 2BMUA 4NDQB 2WE4A 4OLCA 4NDRB 1E19A 3B8GA 3T7BA 1Z9DA 4A7WA 1OHBA 1GSJA 2J5TA 3D2MA 2J0XA 4F6TB 2AKOA 4NDOB 1GS5A 2BNDA 2J4LA 1B7BA 3S6KA 3QUOA 2E9YA 4A7XA 3TVIA 3QVFA 3EK5A 2OGXA 2W21A 3K4YA 4NDPA 3S6HA 3D40A 4I49A 3D2PA 3LL9A 2HMFA 2WE5A 3QVHA 3ZZFA 2J4JA 3NWYA 3K56A 3S6GA 3ZZGA 2BRXA 3EK6A 2RD5A 3U6UA 3L86A 3ZZHA 4JZ9A 2R8VA 4AXSA 2JI5A 3K52A 4KZTA 2BTYA 3WWMA 3ZZIA 3AB2A 3D41A 3C1NA 4NDQA 3KZFA 2A1FA 3L76A 4Q1TA 4NDRA 2CDQA 2BRIA 2VA1A 2J4KA 2BUFA 2OGXB 4NDPB 3K4OA 2J5VA 2V4YA 1OH9A 1YBDA 2J0WA 4F6TA 2V5HA 4NDOA 3LL5A 3C20A 3WWNA 2R98A 3C1MA 2IJ9A 2WXBA 3AAWA 4JZ7A 2JJ4A 4AB7A 3LKKA 2BNEA 2AP9A 1OHAA 3AB4A 4JZ8A
chains in the Genus database with same CATH topology
2X2WA 2JJXA 4USJA 3QUNA 3QURA 2BNFA 2BMUA 4NDQB 2WE4A 4OLCA 4NDRB 1E19A 3B8GA 3T7BA 1Z9DA 4A7WA 1OHBA 1GSJA 2J5TA 3D2MA 2J0XA 4F6TB 2AKOA 4NDOB 1GS5A 2BNDA 2J4LA 1B7BA 3S6KA 3QUOA 2E9YA 4A7XA 3TVIA 3QVFA 3EK5A 2OGXA 2W21A 3K4YA 4NDPA 3S6HA 3D40A 4I49A 3D2PA 3LL9A 2HMFA 2WE5A 3QVHA 3ZZFA 2J4JA 3NWYA 3K56A 3S6GA 3ZZGA 2BRXA 3EK6A 2RD5A 3U6UA 3L86A 3ZZHA 4JZ9A 2R8VA 4AXSA 2JI5A 3K52A 4KZTA 2BTYA 3WWMA 3ZZIA 3AB2A 3D41A 3C1NA 4NDQA 3KZFA 2A1FA 3L76A 4Q1TA 4NDRA 2CDQA 2BRIA 2VA1A 2J4KA 2BUFA 2OGXB 4NDPB 3K4OA 2J5VA 2V4YA 1OH9A 1YBDA 2J0WA 4F6TA 2V5HA 4NDOA 3LL5A 3C20A 3WWNA 2R98A 3C1MA 2IJ9A 2WXBA 3AAWA 4JZ7A 2JJ4A 4AB7A 3LKKA 2BNEA 2AP9A 1OHAA 3AB4A 4JZ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X2W A;  2JJX A;  4USJ A;  3QUN A;  3QUR A;  2BNF A;  2BMU A;  4NDQ B;  2WE4 A;  4OLC A;  4NDR B;  1E19 A;  3B8G A;  3T7B A;  1Z9D A;  4A7W A;  1OHB A;  1GSJ A;  2J5T A;  3D2M A;  2J0X A;  4F6T B;  2AKO A;  4NDO B;  1GS5 A;  2BND A;  2J4L A;  1B7B A;  3S6K A;  3QUO A;  2E9Y A;  4A7X A;  3TVI A;  3QVF A;  3EK5 A;  2OGX A;  2W21 A;  3K4Y A;  4NDP A;  3S6H A;  3D40 A;  4I49 A;  3D2P A;  3LL9 A;  2HMF A;  2WE5 A;  3QVH A;  3ZZF A;  2J4J A;  3NWY A;  3K56 A;  3S6G A;  3ZZG A;  2BRX A;  3EK6 A;  2RD5 A;  3U6U A;  3L86 A;  3ZZH A;  4JZ9 A;  2R8V A;  4AXS A;  2JI5 A;  3K52 A;  4KZT A;  2BTY A;  3WWM A;  3ZZI A;  3AB2 A;  3D41 A;  3C1N A;  4NDQ A;  3KZF A;  2A1F A;  3L76 A;  4Q1T A;  4NDR A;  2CDQ A;  2BRI A;  2VA1 A;  2J4K A;  2BUF A;  2OGX B;  4NDP B;  3K4O A;  2J5V A;  2V4Y A;  1OH9 A;  1YBD A;  2J0W A;  4F6T A;  2V5H A;  4NDO A;  3LL5 A;  3C20 A;  3WWN A;  2R98 A;  3C1M A;  2IJ9 A;  2WXB A;  3AAW A;  4JZ7 A;  2JJ4 A;  4AB7 A;  3LKK A;  2BNE A;  2AP9 A;  1OHA A;  3AB4 A;  4JZ8 A; 
#chains in the Genus database with same CATH topology
 2X2W A;  2JJX A;  4USJ A;  3QUN A;  3QUR A;  2BNF A;  2BMU A;  4NDQ B;  2WE4 A;  4OLC A;  4NDR B;  1E19 A;  3B8G A;  3T7B A;  1Z9D A;  4A7W A;  1OHB A;  1GSJ A;  2J5T A;  3D2M A;  2J0X A;  4F6T B;  2AKO A;  4NDO B;  1GS5 A;  2BND A;  2J4L A;  1B7B A;  3S6K A;  3QUO A;  2E9Y A;  4A7X A;  3TVI A;  3QVF A;  3EK5 A;  2OGX A;  2W21 A;  3K4Y A;  4NDP A;  3S6H A;  3D40 A;  4I49 A;  3D2P A;  3LL9 A;  2HMF A;  2WE5 A;  3QVH A;  3ZZF A;  2J4J A;  3NWY A;  3K56 A;  3S6G A;  3ZZG A;  2BRX A;  3EK6 A;  2RD5 A;  3U6U A;  3L86 A;  3ZZH A;  4JZ9 A;  2R8V A;  4AXS A;  2JI5 A;  3K52 A;  4KZT A;  2BTY A;  3WWM A;  3ZZI A;  3AB2 A;  3D41 A;  3C1N A;  4NDQ A;  3KZF A;  2A1F A;  3L76 A;  4Q1T A;  4NDR A;  2CDQ A;  2BRI A;  2VA1 A;  2J4K A;  2BUF A;  2OGX B;  4NDP B;  3K4O A;  2J5V A;  2V4Y A;  1OH9 A;  1YBD A;  2J0W A;  4F6T A;  2V5H A;  4NDO A;  3LL5 A;  3C20 A;  3WWN A;  2R98 A;  3C1M A;  2IJ9 A;  2WXB A;  3AAW A;  4JZ7 A;  2JJ4 A;  4AB7 A;  3LKK A;  2BNE A;  2AP9 A;  1OHA A;  3AB4 A;  4JZ8 A; 
#chains in the Genus database with same CATH homology
 2X2W A;  2JJX A;  4USJ A;  3QUN A;  3QUR A;  2BNF A;  2BMU A;  4NDQ B;  2WE4 A;  4OLC A;  4NDR B;  1E19 A;  3B8G A;  3T7B A;  1Z9D A;  4A7W A;  1OHB A;  1GSJ A;  2J5T A;  3D2M A;  2J0X A;  4F6T B;  2AKO A;  4NDO B;  1GS5 A;  2BND A;  2J4L A;  1B7B A;  3S6K A;  3QUO A;  2E9Y A;  4A7X A;  3TVI A;  3QVF A;  3EK5 A;  2OGX A;  2W21 A;  3K4Y A;  4NDP A;  3S6H A;  3D40 A;  4I49 A;  3D2P A;  3LL9 A;  2HMF A;  2WE5 A;  3QVH A;  3ZZF A;  2J4J A;  3NWY A;  3K56 A;  3S6G A;  3ZZG A;  2BRX A;  3EK6 A;  2RD5 A;  3U6U A;  3L86 A;  3ZZH A;  4JZ9 A;  2R8V A;  4AXS A;  2JI5 A;  3K52 A;  4KZT A;  2BTY A;  3WWM A;  3ZZI A;  3AB2 A;  3D41 A;  3C1N A;  4NDQ A;  3KZF A;  2A1F A;  3L76 A;  4Q1T A;  4NDR A;  2CDQ A;  2BRI A;  2VA1 A;  2J4K A;  2BUF A;  2OGX B;  4NDP B;  3K4O A;  2J5V A;  2V4Y A;  1OH9 A;  1YBD A;  2J0W A;  4F6T A;  2V5H A;  4NDO A;  3LL5 A;  3C20 A;  3WWN A;  2R98 A;  3C1M A;  2IJ9 A;  2WXB A;  3AAW A;  4JZ7 A;  2JJ4 A;  4AB7 A;  3LKK A;  2BNE A;  2AP9 A;  1OHA A;  3AB4 A;  4JZ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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