4NDPA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
total genus 78
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndpA00
2BNDA 2WXBA 4NDPB 1GS5A 1Z9DA 2J5TA 2JI5A 4JZ9A 3ZZFA 2AP9A 4F6TA 1YBDA 4Q1TA 4NDPA 2A1FA 4USJA 2JJ4A 3D40A 2VA1A 3S6GA 2WE5A 3S6HA 1B7BA 2JJXA 3D2MA 4NDOA 2R98A 1OHBA 3C1NA 1E19A 3LL5A 2V4YA 2E9YA 3LL9A 2V5HA 3EK6A 4NDQA 3T7BA 4A7XA 4NDRB 3B8GA 2BRIA 3QUOA 1OH9A 2W21A 3AB4A 2J4LA 3D41A 3TVIA 2OGXB 2OGXA 3AAWA 3KZFA 3K4OA 2RD5A 2BRXA 3QVFA 2AKOA 3L86A 3U6UA 3QUNA 3ZZHA 2J4JA 3C20A 4NDRA 3LKKA 2BNFA 4NDQB 1GSJA 3QURA 3C1MA 2CDQA 3K4YA 3D2PA 4AXSA 2WE4A 4A7WA 4KZTA 4JZ7A 2IJ9A 2J4KA 4I49A 3AB2A 3WWNA 3EK5A 2J0XA 2BTYA 4OLCA 2J5VA 2R8VA 3ZZGA 4JZ8A 2J0WA 2BNEA 2BUFA 2HMFA 3L76A 3QVHA 2BMUA 3K56A 3NWYA 3K52A 2X2WA 4AB7A 4NDOB 3S6KA 3WWMA 1OHAA 3ZZIA 4F6TB
chains in the Genus database with same CATH superfamily
2BNDA 2WXBA 4NDPB 1GS5A 1Z9DA 2J5TA 2JI5A 4JZ9A 3ZZFA 2AP9A 4F6TA 1YBDA 4Q1TA 4NDPA 2A1FA 4USJA 2JJ4A 3D40A 2VA1A 3S6GA 2WE5A 3S6HA 1B7BA 2JJXA 3D2MA 4NDOA 2R98A 1OHBA 3C1NA 1E19A 3LL5A 2V4YA 2E9YA 3LL9A 2V5HA 3EK6A 4NDQA 3T7BA 4A7XA 4NDRB 3B8GA 2BRIA 3QUOA 1OH9A 2W21A 3AB4A 2J4LA 3D41A 3TVIA 2OGXB 2OGXA 3AAWA 3KZFA 3K4OA 2RD5A 2BRXA 3QVFA 2AKOA 3L86A 3U6UA 3QUNA 3ZZHA 2J4JA 3C20A 4NDRA 3LKKA 2BNFA 4NDQB 1GSJA 3QURA 3C1MA 2CDQA 3K4YA 3D2PA 4AXSA 2WE4A 4A7WA 4KZTA 4JZ7A 2IJ9A 2J4KA 4I49A 3AB2A 3WWNA 3EK5A 2J0XA 2BTYA 4OLCA 2J5VA 2R8VA 3ZZGA 4JZ8A 2J0WA 2BNEA 2BUFA 2HMFA 3L76A 3QVHA 2BMUA 3K56A 3NWYA 3K52A 2X2WA 4AB7A 4NDOB 3S6KA 3WWMA 1OHAA 3ZZIA 4F6TB
chains in the Genus database with same CATH topology
2BNDA 2WXBA 4NDPB 1GS5A 1Z9DA 2J5TA 2JI5A 4JZ9A 3ZZFA 2AP9A 4F6TA 1YBDA 4Q1TA 4NDPA 2A1FA 4USJA 2JJ4A 3D40A 2VA1A 3S6GA 2WE5A 3S6HA 1B7BA 2JJXA 3D2MA 4NDOA 2R98A 1OHBA 3C1NA 1E19A 3LL5A 2V4YA 2E9YA 3LL9A 2V5HA 3EK6A 4NDQA 3T7BA 4A7XA 4NDRB 3B8GA 2BRIA 3QUOA 1OH9A 2W21A 3AB4A 2J4LA 3D41A 3TVIA 2OGXB 2OGXA 3AAWA 3KZFA 3K4OA 2RD5A 2BRXA 3QVFA 2AKOA 3L86A 3U6UA 3QUNA 3ZZHA 2J4JA 3C20A 4NDRA 3LKKA 2BNFA 4NDQB 1GSJA 3QURA 3C1MA 2CDQA 3K4YA 3D2PA 4AXSA 2WE4A 4A7WA 4KZTA 4JZ7A 2IJ9A 2J4KA 4I49A 3AB2A 3WWNA 3EK5A 2J0XA 2BTYA 4OLCA 2J5VA 2R8VA 3ZZGA 4JZ8A 2J0WA 2BNEA 2BUFA 2HMFA 3L76A 3QVHA 2BMUA 3K56A 3NWYA 3K52A 2X2WA 4AB7A 4NDOB 3S6KA 3WWMA 1OHAA 3ZZIA 4F6TB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BND A;  2WXB A;  4NDP B;  1GS5 A;  1Z9D A;  2J5T A;  2JI5 A;  4JZ9 A;  3ZZF A;  2AP9 A;  4F6T A;  1YBD A;  4Q1T A;  4NDP A;  2A1F A;  4USJ A;  2JJ4 A;  3D40 A;  2VA1 A;  3S6G A;  2WE5 A;  3S6H A;  1B7B A;  2JJX A;  3D2M A;  4NDO A;  2R98 A;  1OHB A;  3C1N A;  1E19 A;  3LL5 A;  2V4Y A;  2E9Y A;  3LL9 A;  2V5H A;  3EK6 A;  4NDQ A;  3T7B A;  4A7X A;  4NDR B;  3B8G A;  2BRI A;  3QUO A;  1OH9 A;  2W21 A;  3AB4 A;  2J4L A;  3D41 A;  3TVI A;  2OGX B;  2OGX A;  3AAW A;  3KZF A;  3K4O A;  2RD5 A;  2BRX A;  3QVF A;  2AKO A;  3L86 A;  3U6U A;  3QUN A;  3ZZH A;  2J4J A;  3C20 A;  4NDR A;  3LKK A;  2BNF A;  4NDQ B;  1GSJ A;  3QUR A;  3C1M A;  2CDQ A;  3K4Y A;  3D2P A;  4AXS A;  2WE4 A;  4A7W A;  4KZT A;  4JZ7 A;  2IJ9 A;  2J4K A;  4I49 A;  3AB2 A;  3WWN A;  3EK5 A;  2J0X A;  2BTY A;  4OLC A;  2J5V A;  2R8V A;  3ZZG A;  4JZ8 A;  2J0W A;  2BNE A;  2BUF A;  2HMF A;  3L76 A;  3QVH A;  2BMU A;  3K56 A;  3NWY A;  3K52 A;  2X2W A;  4AB7 A;  4NDO B;  3S6K A;  3WWM A;  1OHA A;  3ZZI A;  4F6T B; 
#chains in the Genus database with same CATH topology
 2BND A;  2WXB A;  4NDP B;  1GS5 A;  1Z9D A;  2J5T A;  2JI5 A;  4JZ9 A;  3ZZF A;  2AP9 A;  4F6T A;  1YBD A;  4Q1T A;  4NDP A;  2A1F A;  4USJ A;  2JJ4 A;  3D40 A;  2VA1 A;  3S6G A;  2WE5 A;  3S6H A;  1B7B A;  2JJX A;  3D2M A;  4NDO A;  2R98 A;  1OHB A;  3C1N A;  1E19 A;  3LL5 A;  2V4Y A;  2E9Y A;  3LL9 A;  2V5H A;  3EK6 A;  4NDQ A;  3T7B A;  4A7X A;  4NDR B;  3B8G A;  2BRI A;  3QUO A;  1OH9 A;  2W21 A;  3AB4 A;  2J4L A;  3D41 A;  3TVI A;  2OGX B;  2OGX A;  3AAW A;  3KZF A;  3K4O A;  2RD5 A;  2BRX A;  3QVF A;  2AKO A;  3L86 A;  3U6U A;  3QUN A;  3ZZH A;  2J4J A;  3C20 A;  4NDR A;  3LKK A;  2BNF A;  4NDQ B;  1GSJ A;  3QUR A;  3C1M A;  2CDQ A;  3K4Y A;  3D2P A;  4AXS A;  2WE4 A;  4A7W A;  4KZT A;  4JZ7 A;  2IJ9 A;  2J4K A;  4I49 A;  3AB2 A;  3WWN A;  3EK5 A;  2J0X A;  2BTY A;  4OLC A;  2J5V A;  2R8V A;  3ZZG A;  4JZ8 A;  2J0W A;  2BNE A;  2BUF A;  2HMF A;  3L76 A;  3QVH A;  2BMU A;  3K56 A;  3NWY A;  3K52 A;  2X2W A;  4AB7 A;  4NDO B;  3S6K A;  3WWM A;  1OHA A;  3ZZI A;  4F6T B; 
#chains in the Genus database with same CATH homology
 2BND A;  2WXB A;  4NDP B;  1GS5 A;  1Z9D A;  2J5T A;  2JI5 A;  4JZ9 A;  3ZZF A;  2AP9 A;  4F6T A;  1YBD A;  4Q1T A;  4NDP A;  2A1F A;  4USJ A;  2JJ4 A;  3D40 A;  2VA1 A;  3S6G A;  2WE5 A;  3S6H A;  1B7B A;  2JJX A;  3D2M A;  4NDO A;  2R98 A;  1OHB A;  3C1N A;  1E19 A;  3LL5 A;  2V4Y A;  2E9Y A;  3LL9 A;  2V5H A;  3EK6 A;  4NDQ A;  3T7B A;  4A7X A;  4NDR B;  3B8G A;  2BRI A;  3QUO A;  1OH9 A;  2W21 A;  3AB4 A;  2J4L A;  3D41 A;  3TVI A;  2OGX B;  2OGX A;  3AAW A;  3KZF A;  3K4O A;  2RD5 A;  2BRX A;  3QVF A;  2AKO A;  3L86 A;  3U6U A;  3QUN A;  3ZZH A;  2J4J A;  3C20 A;  4NDR A;  3LKK A;  2BNF A;  4NDQ B;  1GSJ A;  3QUR A;  3C1M A;  2CDQ A;  3K4Y A;  3D2P A;  4AXS A;  2WE4 A;  4A7W A;  4KZT A;  4JZ7 A;  2IJ9 A;  2J4K A;  4I49 A;  3AB2 A;  3WWN A;  3EK5 A;  2J0X A;  2BTY A;  4OLC A;  2J5V A;  2R8V A;  3ZZG A;  4JZ8 A;  2J0W A;  2BNE A;  2BUF A;  2HMF A;  3L76 A;  3QVH A;  2BMU A;  3K56 A;  3NWY A;  3K52 A;  2X2W A;  4AB7 A;  4NDO B;  3S6K A;  3WWM A;  1OHA A;  3ZZI A;  4F6T B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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