2BNFA

The structure of e. coli ump kinase in complex with utp
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
237
structure length
236
Chain Sequence
AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation.
pubmed doi rcsb
source organism Escherichia coli
total genus 69
structure length 236
sequence length 237
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2bnfA00
3QVFA 3AB2A 2JJ4A 2V5HA 1Z9DA 2JJXA 4Q1TA 3D41A 2J0XA 3LL9A 2WE5A 2WXBA 2BNEA 4F6TA 3NWYA 4OLCA 3EK6A 3L86A 2VA1A 4A7WA 4JZ7A 2IJ9A 4NDQA 3WWMA 3TVIA 2BNDA 2BTYA 2OGXA 4NDPB 3S6HA 3KZFA 2J4KA 3LKKA 2OGXB 4JZ8A 2JI5A 2W21A 1B7BA 3K56A 3D2MA 2BNFA 3K52A 4USJA 3C1MA 3S6KA 4NDPA 3QUNA 4JZ9A 2HMFA 2CDQA 3S6GA 3T7BA 4AB7A 3ZZHA 2AKOA 2V4YA 3K4YA 3K4OA 2BMUA 3C1NA 2AP9A 3ZZIA 2R98A 1E19A 1OH9A 2E9YA 3L76A 3QVHA 4NDRB 3U6UA 2A1FA 4NDOA 2J4JA 3C20A 3ZZGA 2RD5A 2J0WA 2X2WA 3AB4A 4NDOB 3B8GA 2BRXA 1OHAA 3ZZFA 3QUOA 1YBDA 2J5VA 4I49A 3WWNA 4AXSA 4A7XA 2J4LA 2J5TA 3D2PA 4NDRA 2WE4A 3LL5A 1GS5A 3EK5A 1GSJA 3QURA 2BUFA 4F6TB 4KZTA 3AAWA 1OHBA 2BRIA 2R8VA 4NDQB 3D40A
chains in the Genus database with same CATH superfamily
3QVFA 3AB2A 2JJ4A 2V5HA 1Z9DA 2JJXA 4Q1TA 3D41A 2J0XA 3LL9A 2WE5A 2WXBA 2BNEA 4F6TA 3NWYA 4OLCA 3EK6A 3L86A 2VA1A 4A7WA 4JZ7A 2IJ9A 4NDQA 3WWMA 3TVIA 2BNDA 2BTYA 2OGXA 4NDPB 3S6HA 3KZFA 2J4KA 3LKKA 2OGXB 4JZ8A 2JI5A 2W21A 1B7BA 3K56A 3D2MA 2BNFA 3K52A 4USJA 3C1MA 3S6KA 4NDPA 3QUNA 4JZ9A 2HMFA 2CDQA 3S6GA 3T7BA 4AB7A 3ZZHA 2AKOA 2V4YA 3K4YA 3K4OA 2BMUA 3C1NA 2AP9A 3ZZIA 2R98A 1E19A 1OH9A 2E9YA 3L76A 3QVHA 4NDRB 3U6UA 2A1FA 4NDOA 2J4JA 3C20A 3ZZGA 2RD5A 2J0WA 2X2WA 3AB4A 4NDOB 3B8GA 2BRXA 1OHAA 3ZZFA 3QUOA 1YBDA 2J5VA 4I49A 3WWNA 4AXSA 4A7XA 2J4LA 2J5TA 3D2PA 4NDRA 2WE4A 3LL5A 1GS5A 3EK5A 1GSJA 3QURA 2BUFA 4F6TB 4KZTA 3AAWA 1OHBA 2BRIA 2R8VA 4NDQB 3D40A
chains in the Genus database with same CATH topology
3QVFA 3AB2A 2JJ4A 2V5HA 1Z9DA 2JJXA 4Q1TA 3D41A 2J0XA 3LL9A 2WE5A 2WXBA 2BNEA 4F6TA 3NWYA 4OLCA 3EK6A 3L86A 2VA1A 4A7WA 4JZ7A 2IJ9A 4NDQA 3WWMA 3TVIA 2BNDA 2BTYA 2OGXA 4NDPB 3S6HA 3KZFA 2J4KA 3LKKA 2OGXB 4JZ8A 2JI5A 2W21A 1B7BA 3K56A 3D2MA 2BNFA 3K52A 4USJA 3C1MA 3S6KA 4NDPA 3QUNA 4JZ9A 2HMFA 2CDQA 3S6GA 3T7BA 4AB7A 3ZZHA 2AKOA 2V4YA 3K4YA 3K4OA 2BMUA 3C1NA 2AP9A 3ZZIA 2R98A 1E19A 1OH9A 2E9YA 3L76A 3QVHA 4NDRB 3U6UA 2A1FA 4NDOA 2J4JA 3C20A 3ZZGA 2RD5A 2J0WA 2X2WA 3AB4A 4NDOB 3B8GA 2BRXA 1OHAA 3ZZFA 3QUOA 1YBDA 2J5VA 4I49A 3WWNA 4AXSA 4A7XA 2J4LA 2J5TA 3D2PA 4NDRA 2WE4A 3LL5A 1GS5A 3EK5A 1GSJA 3QURA 2BUFA 4F6TB 4KZTA 3AAWA 1OHBA 2BRIA 2R8VA 4NDQB 3D40A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QVF A;  3AB2 A;  2JJ4 A;  2V5H A;  1Z9D A;  2JJX A;  4Q1T A;  3D41 A;  2J0X A;  3LL9 A;  2WE5 A;  2WXB A;  2BNE A;  4F6T A;  3NWY A;  4OLC A;  3EK6 A;  3L86 A;  2VA1 A;  4A7W A;  4JZ7 A;  2IJ9 A;  4NDQ A;  3WWM A;  3TVI A;  2BND A;  2BTY A;  2OGX A;  4NDP B;  3S6H A;  3KZF A;  2J4K A;  3LKK A;  2OGX B;  4JZ8 A;  2JI5 A;  2W21 A;  1B7B A;  3K56 A;  3D2M A;  2BNF A;  3K52 A;  4USJ A;  3C1M A;  3S6K A;  4NDP A;  3QUN A;  4JZ9 A;  2HMF A;  2CDQ A;  3S6G A;  3T7B A;  4AB7 A;  3ZZH A;  2AKO A;  2V4Y A;  3K4Y A;  3K4O A;  2BMU A;  3C1N A;  2AP9 A;  3ZZI A;  2R98 A;  1E19 A;  1OH9 A;  2E9Y A;  3L76 A;  3QVH A;  4NDR B;  3U6U A;  2A1F A;  4NDO A;  2J4J A;  3C20 A;  3ZZG A;  2RD5 A;  2J0W A;  2X2W A;  3AB4 A;  4NDO B;  3B8G A;  2BRX A;  1OHA A;  3ZZF A;  3QUO A;  1YBD A;  2J5V A;  4I49 A;  3WWN A;  4AXS A;  4A7X A;  2J4L A;  2J5T A;  3D2P A;  4NDR A;  2WE4 A;  3LL5 A;  1GS5 A;  3EK5 A;  1GSJ A;  3QUR A;  2BUF A;  4F6T B;  4KZT A;  3AAW A;  1OHB A;  2BRI A;  2R8V A;  4NDQ B;  3D40 A; 
#chains in the Genus database with same CATH topology
 3QVF A;  3AB2 A;  2JJ4 A;  2V5H A;  1Z9D A;  2JJX A;  4Q1T A;  3D41 A;  2J0X A;  3LL9 A;  2WE5 A;  2WXB A;  2BNE A;  4F6T A;  3NWY A;  4OLC A;  3EK6 A;  3L86 A;  2VA1 A;  4A7W A;  4JZ7 A;  2IJ9 A;  4NDQ A;  3WWM A;  3TVI A;  2BND A;  2BTY A;  2OGX A;  4NDP B;  3S6H A;  3KZF A;  2J4K A;  3LKK A;  2OGX B;  4JZ8 A;  2JI5 A;  2W21 A;  1B7B A;  3K56 A;  3D2M A;  2BNF A;  3K52 A;  4USJ A;  3C1M A;  3S6K A;  4NDP A;  3QUN A;  4JZ9 A;  2HMF A;  2CDQ A;  3S6G A;  3T7B A;  4AB7 A;  3ZZH A;  2AKO A;  2V4Y A;  3K4Y A;  3K4O A;  2BMU A;  3C1N A;  2AP9 A;  3ZZI A;  2R98 A;  1E19 A;  1OH9 A;  2E9Y A;  3L76 A;  3QVH A;  4NDR B;  3U6U A;  2A1F A;  4NDO A;  2J4J A;  3C20 A;  3ZZG A;  2RD5 A;  2J0W A;  2X2W A;  3AB4 A;  4NDO B;  3B8G A;  2BRX A;  1OHA A;  3ZZF A;  3QUO A;  1YBD A;  2J5V A;  4I49 A;  3WWN A;  4AXS A;  4A7X A;  2J4L A;  2J5T A;  3D2P A;  4NDR A;  2WE4 A;  3LL5 A;  1GS5 A;  3EK5 A;  1GSJ A;  3QUR A;  2BUF A;  4F6T B;  4KZT A;  3AAW A;  1OHB A;  2BRI A;  2R8V A;  4NDQ B;  3D40 A; 
#chains in the Genus database with same CATH homology
 3QVF A;  3AB2 A;  2JJ4 A;  2V5H A;  1Z9D A;  2JJX A;  4Q1T A;  3D41 A;  2J0X A;  3LL9 A;  2WE5 A;  2WXB A;  2BNE A;  4F6T A;  3NWY A;  4OLC A;  3EK6 A;  3L86 A;  2VA1 A;  4A7W A;  4JZ7 A;  2IJ9 A;  4NDQ A;  3WWM A;  3TVI A;  2BND A;  2BTY A;  2OGX A;  4NDP B;  3S6H A;  3KZF A;  2J4K A;  3LKK A;  2OGX B;  4JZ8 A;  2JI5 A;  2W21 A;  1B7B A;  3K56 A;  3D2M A;  2BNF A;  3K52 A;  4USJ A;  3C1M A;  3S6K A;  4NDP A;  3QUN A;  4JZ9 A;  2HMF A;  2CDQ A;  3S6G A;  3T7B A;  4AB7 A;  3ZZH A;  2AKO A;  2V4Y A;  3K4Y A;  3K4O A;  2BMU A;  3C1N A;  2AP9 A;  3ZZI A;  2R98 A;  1E19 A;  1OH9 A;  2E9Y A;  3L76 A;  3QVH A;  4NDR B;  3U6U A;  2A1F A;  4NDO A;  2J4J A;  3C20 A;  3ZZG A;  2RD5 A;  2J0W A;  2X2W A;  3AB4 A;  4NDO B;  3B8G A;  2BRX A;  1OHA A;  3ZZF A;  3QUO A;  1YBD A;  2J5V A;  4I49 A;  3WWN A;  4AXS A;  4A7X A;  2J4L A;  2J5T A;  3D2P A;  4NDR A;  2WE4 A;  3LL5 A;  1GS5 A;  3EK5 A;  1GSJ A;  3QUR A;  2BUF A;  4F6T B;  4KZT A;  3AAW A;  1OHB A;  2BRI A;  2R8V A;  4NDQ B;  3D40 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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