2BNEA

The structure of e. coli ump kinase in complex with ump
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
237
structure length
234
Chain Sequence
AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 85
structure length 234
sequence length 237
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2bneA00
3D41A 3K52A 4AXSA 2WE5A 4I49A 3NWYA 2BRIA 3C1MA 3D2PA 3KZFA 2OGXA 3QUNA 4NDPB 4NDRA 2BRXA 4F6TA 3ZZIA 4A7WA 3D40A 3LL5A 4NDOB 4JZ9A 3S6GA 2BMUA 2VA1A 2JJXA 2J0XA 1GS5A 1YBDA 3U6UA 3ZZHA 2A1FA 2CDQA 2E9YA 3D2MA 2BUFA 2BNEA 3B8GA 1E19A 4A7XA 2J4JA 2AP9A 3T7BA 2J5TA 4NDQB 3QVHA 1Z9DA 2BTYA 3AAWA 4F6TB 3K4YA 2IJ9A 3QURA 1OHBA 3ZZGA 2BNDA 3LL9A 2RD5A 2V4YA 4NDPA 3S6HA 2V5HA 3C20A 2JI5A 3WWMA 3AB2A 1OH9A 1B7BA 2J0WA 3LKKA 4NDOA 3QVFA 3AB4A 2J5VA 3L86A 2J4LA 3WWNA 2JJ4A 2OGXB 4NDRB 3S6KA 3ZZFA 2HMFA 3QUOA 4AB7A 4OLCA 4USJA 4NDQA 3TVIA 3C1NA 3K56A 2R8VA 2W21A 1GSJA 4Q1TA 4KZTA 2WE4A 2WXBA 2X2WA 2BNFA 2AKOA 2R98A 1OHAA 4JZ8A 3K4OA 3EK6A 3EK5A 4JZ7A 2J4KA 3L76A
chains in the Genus database with same CATH superfamily
3D41A 3K52A 4AXSA 2WE5A 4I49A 3NWYA 2BRIA 3C1MA 3D2PA 3KZFA 2OGXA 3QUNA 4NDPB 4NDRA 2BRXA 4F6TA 3ZZIA 4A7WA 3D40A 3LL5A 4NDOB 4JZ9A 3S6GA 2BMUA 2VA1A 2JJXA 2J0XA 1GS5A 1YBDA 3U6UA 3ZZHA 2A1FA 2CDQA 2E9YA 3D2MA 2BUFA 2BNEA 3B8GA 1E19A 4A7XA 2J4JA 2AP9A 3T7BA 2J5TA 4NDQB 3QVHA 1Z9DA 2BTYA 3AAWA 4F6TB 3K4YA 2IJ9A 3QURA 1OHBA 3ZZGA 2BNDA 3LL9A 2RD5A 2V4YA 4NDPA 3S6HA 2V5HA 3C20A 2JI5A 3WWMA 3AB2A 1OH9A 1B7BA 2J0WA 3LKKA 4NDOA 3QVFA 3AB4A 2J5VA 3L86A 2J4LA 3WWNA 2JJ4A 2OGXB 4NDRB 3S6KA 3ZZFA 2HMFA 3QUOA 4AB7A 4OLCA 4USJA 4NDQA 3TVIA 3C1NA 3K56A 2R8VA 2W21A 1GSJA 4Q1TA 4KZTA 2WE4A 2WXBA 2X2WA 2BNFA 2AKOA 2R98A 1OHAA 4JZ8A 3K4OA 3EK6A 3EK5A 4JZ7A 2J4KA 3L76A
chains in the Genus database with same CATH topology
3D41A 3K52A 4AXSA 2WE5A 4I49A 3NWYA 2BRIA 3C1MA 3D2PA 3KZFA 2OGXA 3QUNA 4NDPB 4NDRA 2BRXA 4F6TA 3ZZIA 4A7WA 3D40A 3LL5A 4NDOB 4JZ9A 3S6GA 2BMUA 2VA1A 2JJXA 2J0XA 1GS5A 1YBDA 3U6UA 3ZZHA 2A1FA 2CDQA 2E9YA 3D2MA 2BUFA 2BNEA 3B8GA 1E19A 4A7XA 2J4JA 2AP9A 3T7BA 2J5TA 4NDQB 3QVHA 1Z9DA 2BTYA 3AAWA 4F6TB 3K4YA 2IJ9A 3QURA 1OHBA 3ZZGA 2BNDA 3LL9A 2RD5A 2V4YA 4NDPA 3S6HA 2V5HA 3C20A 2JI5A 3WWMA 3AB2A 1OH9A 1B7BA 2J0WA 3LKKA 4NDOA 3QVFA 3AB4A 2J5VA 3L86A 2J4LA 3WWNA 2JJ4A 2OGXB 4NDRB 3S6KA 3ZZFA 2HMFA 3QUOA 4AB7A 4OLCA 4USJA 4NDQA 3TVIA 3C1NA 3K56A 2R8VA 2W21A 1GSJA 4Q1TA 4KZTA 2WE4A 2WXBA 2X2WA 2BNFA 2AKOA 2R98A 1OHAA 4JZ8A 3K4OA 3EK6A 3EK5A 4JZ7A 2J4KA 3L76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D41 A;  3K52 A;  4AXS A;  2WE5 A;  4I49 A;  3NWY A;  2BRI A;  3C1M A;  3D2P A;  3KZF A;  2OGX A;  3QUN A;  4NDP B;  4NDR A;  2BRX A;  4F6T A;  3ZZI A;  4A7W A;  3D40 A;  3LL5 A;  4NDO B;  4JZ9 A;  3S6G A;  2BMU A;  2VA1 A;  2JJX A;  2J0X A;  1GS5 A;  1YBD A;  3U6U A;  3ZZH A;  2A1F A;  2CDQ A;  2E9Y A;  3D2M A;  2BUF A;  2BNE A;  3B8G A;  1E19 A;  4A7X A;  2J4J A;  2AP9 A;  3T7B A;  2J5T A;  4NDQ B;  3QVH A;  1Z9D A;  2BTY A;  3AAW A;  4F6T B;  3K4Y A;  2IJ9 A;  3QUR A;  1OHB A;  3ZZG A;  2BND A;  3LL9 A;  2RD5 A;  2V4Y A;  4NDP A;  3S6H A;  2V5H A;  3C20 A;  2JI5 A;  3WWM A;  3AB2 A;  1OH9 A;  1B7B A;  2J0W A;  3LKK A;  4NDO A;  3QVF A;  3AB4 A;  2J5V A;  3L86 A;  2J4L A;  3WWN A;  2JJ4 A;  2OGX B;  4NDR B;  3S6K A;  3ZZF A;  2HMF A;  3QUO A;  4AB7 A;  4OLC A;  4USJ A;  4NDQ A;  3TVI A;  3C1N A;  3K56 A;  2R8V A;  2W21 A;  1GSJ A;  4Q1T A;  4KZT A;  2WE4 A;  2WXB A;  2X2W A;  2BNF A;  2AKO A;  2R98 A;  1OHA A;  4JZ8 A;  3K4O A;  3EK6 A;  3EK5 A;  4JZ7 A;  2J4K A;  3L76 A; 
#chains in the Genus database with same CATH topology
 3D41 A;  3K52 A;  4AXS A;  2WE5 A;  4I49 A;  3NWY A;  2BRI A;  3C1M A;  3D2P A;  3KZF A;  2OGX A;  3QUN A;  4NDP B;  4NDR A;  2BRX A;  4F6T A;  3ZZI A;  4A7W A;  3D40 A;  3LL5 A;  4NDO B;  4JZ9 A;  3S6G A;  2BMU A;  2VA1 A;  2JJX A;  2J0X A;  1GS5 A;  1YBD A;  3U6U A;  3ZZH A;  2A1F A;  2CDQ A;  2E9Y A;  3D2M A;  2BUF A;  2BNE A;  3B8G A;  1E19 A;  4A7X A;  2J4J A;  2AP9 A;  3T7B A;  2J5T A;  4NDQ B;  3QVH A;  1Z9D A;  2BTY A;  3AAW A;  4F6T B;  3K4Y A;  2IJ9 A;  3QUR A;  1OHB A;  3ZZG A;  2BND A;  3LL9 A;  2RD5 A;  2V4Y A;  4NDP A;  3S6H A;  2V5H A;  3C20 A;  2JI5 A;  3WWM A;  3AB2 A;  1OH9 A;  1B7B A;  2J0W A;  3LKK A;  4NDO A;  3QVF A;  3AB4 A;  2J5V A;  3L86 A;  2J4L A;  3WWN A;  2JJ4 A;  2OGX B;  4NDR B;  3S6K A;  3ZZF A;  2HMF A;  3QUO A;  4AB7 A;  4OLC A;  4USJ A;  4NDQ A;  3TVI A;  3C1N A;  3K56 A;  2R8V A;  2W21 A;  1GSJ A;  4Q1T A;  4KZT A;  2WE4 A;  2WXB A;  2X2W A;  2BNF A;  2AKO A;  2R98 A;  1OHA A;  4JZ8 A;  3K4O A;  3EK6 A;  3EK5 A;  4JZ7 A;  2J4K A;  3L76 A; 
#chains in the Genus database with same CATH homology
 3D41 A;  3K52 A;  4AXS A;  2WE5 A;  4I49 A;  3NWY A;  2BRI A;  3C1M A;  3D2P A;  3KZF A;  2OGX A;  3QUN A;  4NDP B;  4NDR A;  2BRX A;  4F6T A;  3ZZI A;  4A7W A;  3D40 A;  3LL5 A;  4NDO B;  4JZ9 A;  3S6G A;  2BMU A;  2VA1 A;  2JJX A;  2J0X A;  1GS5 A;  1YBD A;  3U6U A;  3ZZH A;  2A1F A;  2CDQ A;  2E9Y A;  3D2M A;  2BUF A;  2BNE A;  3B8G A;  1E19 A;  4A7X A;  2J4J A;  2AP9 A;  3T7B A;  2J5T A;  4NDQ B;  3QVH A;  1Z9D A;  2BTY A;  3AAW A;  4F6T B;  3K4Y A;  2IJ9 A;  3QUR A;  1OHB A;  3ZZG A;  2BND A;  3LL9 A;  2RD5 A;  2V4Y A;  4NDP A;  3S6H A;  2V5H A;  3C20 A;  2JI5 A;  3WWM A;  3AB2 A;  1OH9 A;  1B7B A;  2J0W A;  3LKK A;  4NDO A;  3QVF A;  3AB4 A;  2J5V A;  3L86 A;  2J4L A;  3WWN A;  2JJ4 A;  2OGX B;  4NDR B;  3S6K A;  3ZZF A;  2HMF A;  3QUO A;  4AB7 A;  4OLC A;  4USJ A;  4NDQ A;  3TVI A;  3C1N A;  3K56 A;  2R8V A;  2W21 A;  1GSJ A;  4Q1T A;  4KZT A;  2WE4 A;  2WXB A;  2X2W A;  2BNF A;  2AKO A;  2R98 A;  1OHA A;  4JZ8 A;  3K4O A;  3EK6 A;  3EK5 A;  4JZ7 A;  2J4K A;  3L76 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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