2BNEA

The structure of e. coli ump kinase in complex with ump
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
237
structure length
234
Chain Sequence
AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Escherichia coli
publication title Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation.
pubmed doi rcsb
molecule keywords URIDYLATE KINASE
total genus 85
structure length 234
sequence length 237
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2bneA00
1GS5A 4AB7A 4NDQA 2A1FA 2J0WA 1YBDA 2RD5A 4Q1TA 2J4JA 3LL9A 1OHAA 2CDQA 4NDPB 4A7WA 3S6GA 2V5HA 3AB2A 4USJA 2IJ9A 4NDRB 3AB4A 4JZ9A 3EK6A 3K56A 2HMFA 2BRIA 3WWNA 4AXSA 2WE4A 2JI5A 2OGXB 3QURA 1OH9A 2BNDA 3ZZGA 3NWYA 2E9YA 2BUFA 2J4KA 2BNFA 3ZZHA 4F6TB 3TVIA 2J0XA 1B7BA 2AP9A 2V4YA 2JJ4A 2JJXA 2BNEA 2WXBA 4NDQB 3D2PA 2W21A 1OHBA 3K4OA 4JZ7A 3WWMA 4NDOA 3D40A 3D2MA 1E19A 3LL5A 3QVHA 3EK5A 3AAWA 2R8VA 4A7XA 2J5TA 2J5VA 3QUNA 3C1MA 3S6KA 2WE5A 4NDOB 2X2WA 2BRXA 3K4YA 3U6UA 3D41A 2AKOA 2J4LA 1GSJA 4NDPA 4OLCA 3K52A 4NDRA 3LKKA 1Z9DA 2BTYA 3ZZFA 2R98A 3C20A 3QVFA 2VA1A 2OGXA 3KZFA 3L76A 3L86A 4I49A 3ZZIA 4KZTA 3QUOA 3S6HA 3B8GA 4F6TA 3C1NA 4JZ8A 2BMUA 3T7BA
chains in the Genus database with same CATH superfamily
1GS5A 4AB7A 4NDQA 2A1FA 2J0WA 1YBDA 2RD5A 4Q1TA 2J4JA 3LL9A 1OHAA 2CDQA 4NDPB 4A7WA 3S6GA 2V5HA 3AB2A 4USJA 2IJ9A 4NDRB 3AB4A 4JZ9A 3EK6A 3K56A 2HMFA 2BRIA 3WWNA 4AXSA 2WE4A 2JI5A 2OGXB 3QURA 1OH9A 2BNDA 3ZZGA 3NWYA 2E9YA 2BUFA 2J4KA 2BNFA 3ZZHA 4F6TB 3TVIA 2J0XA 1B7BA 2AP9A 2V4YA 2JJ4A 2JJXA 2BNEA 2WXBA 4NDQB 3D2PA 2W21A 1OHBA 3K4OA 4JZ7A 3WWMA 4NDOA 3D40A 3D2MA 1E19A 3LL5A 3QVHA 3EK5A 3AAWA 2R8VA 4A7XA 2J5TA 2J5VA 3QUNA 3C1MA 3S6KA 2WE5A 4NDOB 2X2WA 2BRXA 3K4YA 3U6UA 3D41A 2AKOA 2J4LA 1GSJA 4NDPA 4OLCA 3K52A 4NDRA 3LKKA 1Z9DA 2BTYA 3ZZFA 2R98A 3C20A 3QVFA 2VA1A 2OGXA 3KZFA 3L76A 3L86A 4I49A 3ZZIA 4KZTA 3QUOA 3S6HA 3B8GA 4F6TA 3C1NA 4JZ8A 2BMUA 3T7BA
chains in the Genus database with same CATH topology
1GS5A 4AB7A 4NDQA 2A1FA 2J0WA 1YBDA 2RD5A 4Q1TA 2J4JA 3LL9A 1OHAA 2CDQA 4NDPB 4A7WA 3S6GA 2V5HA 3AB2A 4USJA 2IJ9A 4NDRB 3AB4A 4JZ9A 3EK6A 3K56A 2HMFA 2BRIA 3WWNA 4AXSA 2WE4A 2JI5A 2OGXB 3QURA 1OH9A 2BNDA 3ZZGA 3NWYA 2E9YA 2BUFA 2J4KA 2BNFA 3ZZHA 4F6TB 3TVIA 2J0XA 1B7BA 2AP9A 2V4YA 2JJ4A 2JJXA 2BNEA 2WXBA 4NDQB 3D2PA 2W21A 1OHBA 3K4OA 4JZ7A 3WWMA 4NDOA 3D40A 3D2MA 1E19A 3LL5A 3QVHA 3EK5A 3AAWA 2R8VA 4A7XA 2J5TA 2J5VA 3QUNA 3C1MA 3S6KA 2WE5A 4NDOB 2X2WA 2BRXA 3K4YA 3U6UA 3D41A 2AKOA 2J4LA 1GSJA 4NDPA 4OLCA 3K52A 4NDRA 3LKKA 1Z9DA 2BTYA 3ZZFA 2R98A 3C20A 3QVFA 2VA1A 2OGXA 3KZFA 3L76A 3L86A 4I49A 3ZZIA 4KZTA 3QUOA 3S6HA 3B8GA 4F6TA 3C1NA 4JZ8A 2BMUA 3T7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GS5 A;  4AB7 A;  4NDQ A;  2A1F A;  2J0W A;  1YBD A;  2RD5 A;  4Q1T A;  2J4J A;  3LL9 A;  1OHA A;  2CDQ A;  4NDP B;  4A7W A;  3S6G A;  2V5H A;  3AB2 A;  4USJ A;  2IJ9 A;  4NDR B;  3AB4 A;  4JZ9 A;  3EK6 A;  3K56 A;  2HMF A;  2BRI A;  3WWN A;  4AXS A;  2WE4 A;  2JI5 A;  2OGX B;  3QUR A;  1OH9 A;  2BND A;  3ZZG A;  3NWY A;  2E9Y A;  2BUF A;  2J4K A;  2BNF A;  3ZZH A;  4F6T B;  3TVI A;  2J0X A;  1B7B A;  2AP9 A;  2V4Y A;  2JJ4 A;  2JJX A;  2BNE A;  2WXB A;  4NDQ B;  3D2P A;  2W21 A;  1OHB A;  3K4O A;  4JZ7 A;  3WWM A;  4NDO A;  3D40 A;  3D2M A;  1E19 A;  3LL5 A;  3QVH A;  3EK5 A;  3AAW A;  2R8V A;  4A7X A;  2J5T A;  2J5V A;  3QUN A;  3C1M A;  3S6K A;  2WE5 A;  4NDO B;  2X2W A;  2BRX A;  3K4Y A;  3U6U A;  3D41 A;  2AKO A;  2J4L A;  1GSJ A;  4NDP A;  4OLC A;  3K52 A;  4NDR A;  3LKK A;  1Z9D A;  2BTY A;  3ZZF A;  2R98 A;  3C20 A;  3QVF A;  2VA1 A;  2OGX A;  3KZF A;  3L76 A;  3L86 A;  4I49 A;  3ZZI A;  4KZT A;  3QUO A;  3S6H A;  3B8G A;  4F6T A;  3C1N A;  4JZ8 A;  2BMU A;  3T7B A; 
#chains in the Genus database with same CATH topology
 1GS5 A;  4AB7 A;  4NDQ A;  2A1F A;  2J0W A;  1YBD A;  2RD5 A;  4Q1T A;  2J4J A;  3LL9 A;  1OHA A;  2CDQ A;  4NDP B;  4A7W A;  3S6G A;  2V5H A;  3AB2 A;  4USJ A;  2IJ9 A;  4NDR B;  3AB4 A;  4JZ9 A;  3EK6 A;  3K56 A;  2HMF A;  2BRI A;  3WWN A;  4AXS A;  2WE4 A;  2JI5 A;  2OGX B;  3QUR A;  1OH9 A;  2BND A;  3ZZG A;  3NWY A;  2E9Y A;  2BUF A;  2J4K A;  2BNF A;  3ZZH A;  4F6T B;  3TVI A;  2J0X A;  1B7B A;  2AP9 A;  2V4Y A;  2JJ4 A;  2JJX A;  2BNE A;  2WXB A;  4NDQ B;  3D2P A;  2W21 A;  1OHB A;  3K4O A;  4JZ7 A;  3WWM A;  4NDO A;  3D40 A;  3D2M A;  1E19 A;  3LL5 A;  3QVH A;  3EK5 A;  3AAW A;  2R8V A;  4A7X A;  2J5T A;  2J5V A;  3QUN A;  3C1M A;  3S6K A;  2WE5 A;  4NDO B;  2X2W A;  2BRX A;  3K4Y A;  3U6U A;  3D41 A;  2AKO A;  2J4L A;  1GSJ A;  4NDP A;  4OLC A;  3K52 A;  4NDR A;  3LKK A;  1Z9D A;  2BTY A;  3ZZF A;  2R98 A;  3C20 A;  3QVF A;  2VA1 A;  2OGX A;  3KZF A;  3L76 A;  3L86 A;  4I49 A;  3ZZI A;  4KZT A;  3QUO A;  3S6H A;  3B8G A;  4F6T A;  3C1N A;  4JZ8 A;  2BMU A;  3T7B A; 
#chains in the Genus database with same CATH homology
 1GS5 A;  4AB7 A;  4NDQ A;  2A1F A;  2J0W A;  1YBD A;  2RD5 A;  4Q1T A;  2J4J A;  3LL9 A;  1OHA A;  2CDQ A;  4NDP B;  4A7W A;  3S6G A;  2V5H A;  3AB2 A;  4USJ A;  2IJ9 A;  4NDR B;  3AB4 A;  4JZ9 A;  3EK6 A;  3K56 A;  2HMF A;  2BRI A;  3WWN A;  4AXS A;  2WE4 A;  2JI5 A;  2OGX B;  3QUR A;  1OH9 A;  2BND A;  3ZZG A;  3NWY A;  2E9Y A;  2BUF A;  2J4K A;  2BNF A;  3ZZH A;  4F6T B;  3TVI A;  2J0X A;  1B7B A;  2AP9 A;  2V4Y A;  2JJ4 A;  2JJX A;  2BNE A;  2WXB A;  4NDQ B;  3D2P A;  2W21 A;  1OHB A;  3K4O A;  4JZ7 A;  3WWM A;  4NDO A;  3D40 A;  3D2M A;  1E19 A;  3LL5 A;  3QVH A;  3EK5 A;  3AAW A;  2R8V A;  4A7X A;  2J5T A;  2J5V A;  3QUN A;  3C1M A;  3S6K A;  2WE5 A;  4NDO B;  2X2W A;  2BRX A;  3K4Y A;  3U6U A;  3D41 A;  2AKO A;  2J4L A;  1GSJ A;  4NDP A;  4OLC A;  3K52 A;  4NDR A;  3LKK A;  1Z9D A;  2BTY A;  3ZZF A;  2R98 A;  3C20 A;  3QVF A;  2VA1 A;  2OGX A;  3KZF A;  3L76 A;  3L86 A;  4I49 A;  3ZZI A;  4KZT A;  3QUO A;  3S6H A;  3B8G A;  4F6T A;  3C1N A;  4JZ8 A;  2BMU A;  3T7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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