2A1FA

Crystal structure of uridylate kinase
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
239
structure length
232
Chain Sequence
LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Uridylate kinase
rcsb
molecule tags Transferase
source organism Haemophilus influenzae
molecule keywords Uridylate kinase
total genus 82
structure length 232
sequence length 239
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2a1fA00
2W21A 3NWYA 3QURA 2E9YA 4NDQA 2JJ4A 4NDRB 2WE5A 3D2MA 3D41A 3ZZHA 3S6HA 2BUFA 4OLCA 4USJA 1GSJA 3K4YA 3C1MA 2J0WA 3TVIA 3K52A 4A7XA 3EK6A 1Z9DA 3ZZGA 2V4YA 3WWNA 4NDOA 3S6KA 4NDQB 1OHAA 2R98A 4AXSA 2BRIA 2J4LA 2J4KA 2A1FA 3C1NA 4AB7A 3AAWA 3C20A 3QVHA 3ZZIA 2WE4A 2BTYA 2J5TA 3QVFA 4NDPA 2V5HA 3LKKA 3U6UA 2JI5A 3D40A 3ZZFA 2AP9A 1OHBA 4KZTA 3L76A 2R8VA 3B8GA 4F6TA 4JZ9A 2J0XA 3AB2A 4JZ8A 3QUNA 3S6GA 3K4OA 4NDPB 2J5VA 2JJXA 1OH9A 4NDRA 2HMFA 1YBDA 2IJ9A 1B7BA 3D2PA 2WXBA 2BRXA 2BNDA 4NDOB 3WWMA 2CDQA 4F6TB 3K56A 4Q1TA 3LL9A 3EK5A 1GS5A 3KZFA 2BMUA 1E19A 3QUOA 4JZ7A 2OGXA 2BNEA 3T7BA 4A7WA 2RD5A 3L86A 3AB4A 2AKOA 3LL5A 4I49A 2J4JA 2X2WA 2BNFA 2VA1A 2OGXB
chains in the Genus database with same CATH superfamily
2W21A 3NWYA 3QURA 2E9YA 4NDQA 2JJ4A 4NDRB 2WE5A 3D2MA 3D41A 3ZZHA 3S6HA 2BUFA 4OLCA 4USJA 1GSJA 3K4YA 3C1MA 2J0WA 3TVIA 3K52A 4A7XA 3EK6A 1Z9DA 3ZZGA 2V4YA 3WWNA 4NDOA 3S6KA 4NDQB 1OHAA 2R98A 4AXSA 2BRIA 2J4LA 2J4KA 2A1FA 3C1NA 4AB7A 3AAWA 3C20A 3QVHA 3ZZIA 2WE4A 2BTYA 2J5TA 3QVFA 4NDPA 2V5HA 3LKKA 3U6UA 2JI5A 3D40A 3ZZFA 2AP9A 1OHBA 4KZTA 3L76A 2R8VA 3B8GA 4F6TA 4JZ9A 2J0XA 3AB2A 4JZ8A 3QUNA 3S6GA 3K4OA 4NDPB 2J5VA 2JJXA 1OH9A 4NDRA 2HMFA 1YBDA 2IJ9A 1B7BA 3D2PA 2WXBA 2BRXA 2BNDA 4NDOB 3WWMA 2CDQA 4F6TB 3K56A 4Q1TA 3LL9A 3EK5A 1GS5A 3KZFA 2BMUA 1E19A 3QUOA 4JZ7A 2OGXA 2BNEA 3T7BA 4A7WA 2RD5A 3L86A 3AB4A 2AKOA 3LL5A 4I49A 2J4JA 2X2WA 2BNFA 2VA1A 2OGXB
chains in the Genus database with same CATH topology
2W21A 3NWYA 3QURA 2E9YA 4NDQA 2JJ4A 4NDRB 2WE5A 3D2MA 3D41A 3ZZHA 3S6HA 2BUFA 4OLCA 4USJA 1GSJA 3K4YA 3C1MA 2J0WA 3TVIA 3K52A 4A7XA 3EK6A 1Z9DA 3ZZGA 2V4YA 3WWNA 4NDOA 3S6KA 4NDQB 1OHAA 2R98A 4AXSA 2BRIA 2J4LA 2J4KA 2A1FA 3C1NA 4AB7A 3AAWA 3C20A 3QVHA 3ZZIA 2WE4A 2BTYA 2J5TA 3QVFA 4NDPA 2V5HA 3LKKA 3U6UA 2JI5A 3D40A 3ZZFA 2AP9A 1OHBA 4KZTA 3L76A 2R8VA 3B8GA 4F6TA 4JZ9A 2J0XA 3AB2A 4JZ8A 3QUNA 3S6GA 3K4OA 4NDPB 2J5VA 2JJXA 1OH9A 4NDRA 2HMFA 1YBDA 2IJ9A 1B7BA 3D2PA 2WXBA 2BRXA 2BNDA 4NDOB 3WWMA 2CDQA 4F6TB 3K56A 4Q1TA 3LL9A 3EK5A 1GS5A 3KZFA 2BMUA 1E19A 3QUOA 4JZ7A 2OGXA 2BNEA 3T7BA 4A7WA 2RD5A 3L86A 3AB4A 2AKOA 3LL5A 4I49A 2J4JA 2X2WA 2BNFA 2VA1A 2OGXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W21 A;  3NWY A;  3QUR A;  2E9Y A;  4NDQ A;  2JJ4 A;  4NDR B;  2WE5 A;  3D2M A;  3D41 A;  3ZZH A;  3S6H A;  2BUF A;  4OLC A;  4USJ A;  1GSJ A;  3K4Y A;  3C1M A;  2J0W A;  3TVI A;  3K52 A;  4A7X A;  3EK6 A;  1Z9D A;  3ZZG A;  2V4Y A;  3WWN A;  4NDO A;  3S6K A;  4NDQ B;  1OHA A;  2R98 A;  4AXS A;  2BRI A;  2J4L A;  2J4K A;  2A1F A;  3C1N A;  4AB7 A;  3AAW A;  3C20 A;  3QVH A;  3ZZI A;  2WE4 A;  2BTY A;  2J5T A;  3QVF A;  4NDP A;  2V5H A;  3LKK A;  3U6U A;  2JI5 A;  3D40 A;  3ZZF A;  2AP9 A;  1OHB A;  4KZT A;  3L76 A;  2R8V A;  3B8G A;  4F6T A;  4JZ9 A;  2J0X A;  3AB2 A;  4JZ8 A;  3QUN A;  3S6G A;  3K4O A;  4NDP B;  2J5V A;  2JJX A;  1OH9 A;  4NDR A;  2HMF A;  1YBD A;  2IJ9 A;  1B7B A;  3D2P A;  2WXB A;  2BRX A;  2BND A;  4NDO B;  3WWM A;  2CDQ A;  4F6T B;  3K56 A;  4Q1T A;  3LL9 A;  3EK5 A;  1GS5 A;  3KZF A;  2BMU A;  1E19 A;  3QUO A;  4JZ7 A;  2OGX A;  2BNE A;  3T7B A;  4A7W A;  2RD5 A;  3L86 A;  3AB4 A;  2AKO A;  3LL5 A;  4I49 A;  2J4J A;  2X2W A;  2BNF A;  2VA1 A;  2OGX B; 
#chains in the Genus database with same CATH topology
 2W21 A;  3NWY A;  3QUR A;  2E9Y A;  4NDQ A;  2JJ4 A;  4NDR B;  2WE5 A;  3D2M A;  3D41 A;  3ZZH A;  3S6H A;  2BUF A;  4OLC A;  4USJ A;  1GSJ A;  3K4Y A;  3C1M A;  2J0W A;  3TVI A;  3K52 A;  4A7X A;  3EK6 A;  1Z9D A;  3ZZG A;  2V4Y A;  3WWN A;  4NDO A;  3S6K A;  4NDQ B;  1OHA A;  2R98 A;  4AXS A;  2BRI A;  2J4L A;  2J4K A;  2A1F A;  3C1N A;  4AB7 A;  3AAW A;  3C20 A;  3QVH A;  3ZZI A;  2WE4 A;  2BTY A;  2J5T A;  3QVF A;  4NDP A;  2V5H A;  3LKK A;  3U6U A;  2JI5 A;  3D40 A;  3ZZF A;  2AP9 A;  1OHB A;  4KZT A;  3L76 A;  2R8V A;  3B8G A;  4F6T A;  4JZ9 A;  2J0X A;  3AB2 A;  4JZ8 A;  3QUN A;  3S6G A;  3K4O A;  4NDP B;  2J5V A;  2JJX A;  1OH9 A;  4NDR A;  2HMF A;  1YBD A;  2IJ9 A;  1B7B A;  3D2P A;  2WXB A;  2BRX A;  2BND A;  4NDO B;  3WWM A;  2CDQ A;  4F6T B;  3K56 A;  4Q1T A;  3LL9 A;  3EK5 A;  1GS5 A;  3KZF A;  2BMU A;  1E19 A;  3QUO A;  4JZ7 A;  2OGX A;  2BNE A;  3T7B A;  4A7W A;  2RD5 A;  3L86 A;  3AB4 A;  2AKO A;  3LL5 A;  4I49 A;  2J4J A;  2X2W A;  2BNF A;  2VA1 A;  2OGX B; 
#chains in the Genus database with same CATH homology
 2W21 A;  3NWY A;  3QUR A;  2E9Y A;  4NDQ A;  2JJ4 A;  4NDR B;  2WE5 A;  3D2M A;  3D41 A;  3ZZH A;  3S6H A;  2BUF A;  4OLC A;  4USJ A;  1GSJ A;  3K4Y A;  3C1M A;  2J0W A;  3TVI A;  3K52 A;  4A7X A;  3EK6 A;  1Z9D A;  3ZZG A;  2V4Y A;  3WWN A;  4NDO A;  3S6K A;  4NDQ B;  1OHA A;  2R98 A;  4AXS A;  2BRI A;  2J4L A;  2J4K A;  2A1F A;  3C1N A;  4AB7 A;  3AAW A;  3C20 A;  3QVH A;  3ZZI A;  2WE4 A;  2BTY A;  2J5T A;  3QVF A;  4NDP A;  2V5H A;  3LKK A;  3U6U A;  2JI5 A;  3D40 A;  3ZZF A;  2AP9 A;  1OHB A;  4KZT A;  3L76 A;  2R8V A;  3B8G A;  4F6T A;  4JZ9 A;  2J0X A;  3AB2 A;  4JZ8 A;  3QUN A;  3S6G A;  3K4O A;  4NDP B;  2J5V A;  2JJX A;  1OH9 A;  4NDR A;  2HMF A;  1YBD A;  2IJ9 A;  1B7B A;  3D2P A;  2WXB A;  2BRX A;  2BND A;  4NDO B;  3WWM A;  2CDQ A;  4F6T B;  3K56 A;  4Q1T A;  3LL9 A;  3EK5 A;  1GS5 A;  3KZF A;  2BMU A;  1E19 A;  3QUO A;  4JZ7 A;  2OGX A;  2BNE A;  3T7B A;  4A7W A;  2RD5 A;  3L86 A;  3AB4 A;  2AKO A;  3LL5 A;  4I49 A;  2J4J A;  2X2W A;  2BNF A;  2VA1 A;  2OGX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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