3K4YA

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4yA00
3WWMA 4KZTA 3QVFA 4NDOA 1GSJA 2J5TA 2V4YA 4OLCA 1B7BA 3D2PA 3EK6A 3U6UA 2IJ9A 2R98A 3S6HA 3ZZGA 3AAWA 2BMUA 3ZZHA 4AB7A 2BRXA 2CDQA 2BRIA 2WE5A 2J4JA 2BNDA 4A7WA 4I49A 2J0WA 2WE4A 2R8VA 3C20A 1OHBA 3C1MA 3KZFA 3K56A 3TVIA 2VA1A 2HMFA 4F6TA 2BUFA 3S6KA 3B8GA 2AKOA 3L76A 1E19A 3AB4A 3K4YA 3L86A 2J4KA 2OGXA 4NDQA 3EK5A 4NDOB 4NDPA 4AXSA 4F6TB 2JJ4A 2J4LA 2JI5A 3QUNA 3D40A 3WWNA 2BTYA 4NDRA 3QVHA 2J5VA 1OHAA 2OGXB 2JJXA 2WXBA 2A1FA 3D2MA 2W21A 3ZZFA 1Z9DA 3LL5A 3C1NA 3QURA 3LL9A 4JZ7A 2BNFA 2AP9A 3LKKA 2J0XA 3K52A 3QUOA 3NWYA 1YBDA 4Q1TA 3D41A 1GS5A 2E9YA 3S6GA 3AB2A 4JZ9A 4NDQB 4A7XA 3T7BA 3ZZIA 2BNEA 2V5HA 2X2WA 4NDPB 2RD5A 4JZ8A 3K4OA 1OH9A 4USJA 4NDRB
chains in the Genus database with same CATH superfamily
3WWMA 4KZTA 3QVFA 4NDOA 1GSJA 2J5TA 2V4YA 4OLCA 1B7BA 3D2PA 3EK6A 3U6UA 2IJ9A 2R98A 3S6HA 3ZZGA 3AAWA 2BMUA 3ZZHA 4AB7A 2BRXA 2CDQA 2BRIA 2WE5A 2J4JA 2BNDA 4A7WA 4I49A 2J0WA 2WE4A 2R8VA 3C20A 1OHBA 3C1MA 3KZFA 3K56A 3TVIA 2VA1A 2HMFA 4F6TA 2BUFA 3S6KA 3B8GA 2AKOA 3L76A 1E19A 3AB4A 3K4YA 3L86A 2J4KA 2OGXA 4NDQA 3EK5A 4NDOB 4NDPA 4AXSA 4F6TB 2JJ4A 2J4LA 2JI5A 3QUNA 3D40A 3WWNA 2BTYA 4NDRA 3QVHA 2J5VA 1OHAA 2OGXB 2JJXA 2WXBA 2A1FA 3D2MA 2W21A 3ZZFA 1Z9DA 3LL5A 3C1NA 3QURA 3LL9A 4JZ7A 2BNFA 2AP9A 3LKKA 2J0XA 3K52A 3QUOA 3NWYA 1YBDA 4Q1TA 3D41A 1GS5A 2E9YA 3S6GA 3AB2A 4JZ9A 4NDQB 4A7XA 3T7BA 3ZZIA 2BNEA 2V5HA 2X2WA 4NDPB 2RD5A 4JZ8A 3K4OA 1OH9A 4USJA 4NDRB
chains in the Genus database with same CATH topology
3WWMA 4KZTA 3QVFA 4NDOA 1GSJA 2J5TA 2V4YA 4OLCA 1B7BA 3D2PA 3EK6A 3U6UA 2IJ9A 2R98A 3S6HA 3ZZGA 3AAWA 2BMUA 3ZZHA 4AB7A 2BRXA 2CDQA 2BRIA 2WE5A 2J4JA 2BNDA 4A7WA 4I49A 2J0WA 2WE4A 2R8VA 3C20A 1OHBA 3C1MA 3KZFA 3K56A 3TVIA 2VA1A 2HMFA 4F6TA 2BUFA 3S6KA 3B8GA 2AKOA 3L76A 1E19A 3AB4A 3K4YA 3L86A 2J4KA 2OGXA 4NDQA 3EK5A 4NDOB 4NDPA 4AXSA 4F6TB 2JJ4A 2J4LA 2JI5A 3QUNA 3D40A 3WWNA 2BTYA 4NDRA 3QVHA 2J5VA 1OHAA 2OGXB 2JJXA 2WXBA 2A1FA 3D2MA 2W21A 3ZZFA 1Z9DA 3LL5A 3C1NA 3QURA 3LL9A 4JZ7A 2BNFA 2AP9A 3LKKA 2J0XA 3K52A 3QUOA 3NWYA 1YBDA 4Q1TA 3D41A 1GS5A 2E9YA 3S6GA 3AB2A 4JZ9A 4NDQB 4A7XA 3T7BA 3ZZIA 2BNEA 2V5HA 2X2WA 4NDPB 2RD5A 4JZ8A 3K4OA 1OH9A 4USJA 4NDRB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WWM A;  4KZT A;  3QVF A;  4NDO A;  1GSJ A;  2J5T A;  2V4Y A;  4OLC A;  1B7B A;  3D2P A;  3EK6 A;  3U6U A;  2IJ9 A;  2R98 A;  3S6H A;  3ZZG A;  3AAW A;  2BMU A;  3ZZH A;  4AB7 A;  2BRX A;  2CDQ A;  2BRI A;  2WE5 A;  2J4J A;  2BND A;  4A7W A;  4I49 A;  2J0W A;  2WE4 A;  2R8V A;  3C20 A;  1OHB A;  3C1M A;  3KZF A;  3K56 A;  3TVI A;  2VA1 A;  2HMF A;  4F6T A;  2BUF A;  3S6K A;  3B8G A;  2AKO A;  3L76 A;  1E19 A;  3AB4 A;  3K4Y A;  3L86 A;  2J4K A;  2OGX A;  4NDQ A;  3EK5 A;  4NDO B;  4NDP A;  4AXS A;  4F6T B;  2JJ4 A;  2J4L A;  2JI5 A;  3QUN A;  3D40 A;  3WWN A;  2BTY A;  4NDR A;  3QVH A;  2J5V A;  1OHA A;  2OGX B;  2JJX A;  2WXB A;  2A1F A;  3D2M A;  2W21 A;  3ZZF A;  1Z9D A;  3LL5 A;  3C1N A;  3QUR A;  3LL9 A;  4JZ7 A;  2BNF A;  2AP9 A;  3LKK A;  2J0X A;  3K52 A;  3QUO A;  3NWY A;  1YBD A;  4Q1T A;  3D41 A;  1GS5 A;  2E9Y A;  3S6G A;  3AB2 A;  4JZ9 A;  4NDQ B;  4A7X A;  3T7B A;  3ZZI A;  2BNE A;  2V5H A;  2X2W A;  4NDP B;  2RD5 A;  4JZ8 A;  3K4O A;  1OH9 A;  4USJ A;  4NDR B; 
#chains in the Genus database with same CATH topology
 3WWM A;  4KZT A;  3QVF A;  4NDO A;  1GSJ A;  2J5T A;  2V4Y A;  4OLC A;  1B7B A;  3D2P A;  3EK6 A;  3U6U A;  2IJ9 A;  2R98 A;  3S6H A;  3ZZG A;  3AAW A;  2BMU A;  3ZZH A;  4AB7 A;  2BRX A;  2CDQ A;  2BRI A;  2WE5 A;  2J4J A;  2BND A;  4A7W A;  4I49 A;  2J0W A;  2WE4 A;  2R8V A;  3C20 A;  1OHB A;  3C1M A;  3KZF A;  3K56 A;  3TVI A;  2VA1 A;  2HMF A;  4F6T A;  2BUF A;  3S6K A;  3B8G A;  2AKO A;  3L76 A;  1E19 A;  3AB4 A;  3K4Y A;  3L86 A;  2J4K A;  2OGX A;  4NDQ A;  3EK5 A;  4NDO B;  4NDP A;  4AXS A;  4F6T B;  2JJ4 A;  2J4L A;  2JI5 A;  3QUN A;  3D40 A;  3WWN A;  2BTY A;  4NDR A;  3QVH A;  2J5V A;  1OHA A;  2OGX B;  2JJX A;  2WXB A;  2A1F A;  3D2M A;  2W21 A;  3ZZF A;  1Z9D A;  3LL5 A;  3C1N A;  3QUR A;  3LL9 A;  4JZ7 A;  2BNF A;  2AP9 A;  3LKK A;  2J0X A;  3K52 A;  3QUO A;  3NWY A;  1YBD A;  4Q1T A;  3D41 A;  1GS5 A;  2E9Y A;  3S6G A;  3AB2 A;  4JZ9 A;  4NDQ B;  4A7X A;  3T7B A;  3ZZI A;  2BNE A;  2V5H A;  2X2W A;  4NDP B;  2RD5 A;  4JZ8 A;  3K4O A;  1OH9 A;  4USJ A;  4NDR B; 
#chains in the Genus database with same CATH homology
 3WWM A;  4KZT A;  3QVF A;  4NDO A;  1GSJ A;  2J5T A;  2V4Y A;  4OLC A;  1B7B A;  3D2P A;  3EK6 A;  3U6U A;  2IJ9 A;  2R98 A;  3S6H A;  3ZZG A;  3AAW A;  2BMU A;  3ZZH A;  4AB7 A;  2BRX A;  2CDQ A;  2BRI A;  2WE5 A;  2J4J A;  2BND A;  4A7W A;  4I49 A;  2J0W A;  2WE4 A;  2R8V A;  3C20 A;  1OHB A;  3C1M A;  3KZF A;  3K56 A;  3TVI A;  2VA1 A;  2HMF A;  4F6T A;  2BUF A;  3S6K A;  3B8G A;  2AKO A;  3L76 A;  1E19 A;  3AB4 A;  3K4Y A;  3L86 A;  2J4K A;  2OGX A;  4NDQ A;  3EK5 A;  4NDO B;  4NDP A;  4AXS A;  4F6T B;  2JJ4 A;  2J4L A;  2JI5 A;  3QUN A;  3D40 A;  3WWN A;  2BTY A;  4NDR A;  3QVH A;  2J5V A;  1OHA A;  2OGX B;  2JJX A;  2WXB A;  2A1F A;  3D2M A;  2W21 A;  3ZZF A;  1Z9D A;  3LL5 A;  3C1N A;  3QUR A;  3LL9 A;  4JZ7 A;  2BNF A;  2AP9 A;  3LKK A;  2J0X A;  3K52 A;  3QUO A;  3NWY A;  1YBD A;  4Q1T A;  3D41 A;  1GS5 A;  2E9Y A;  3S6G A;  3AB2 A;  4JZ9 A;  4NDQ B;  4A7X A;  3T7B A;  3ZZI A;  2BNE A;  2V5H A;  2X2W A;  4NDP B;  2RD5 A;  4JZ8 A;  3K4O A;  1OH9 A;  4USJ A;  4NDR B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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