3K4YA

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4yA00
2JJXA 4I49A 2BTYA 2OGXA 2J4LA 3AAWA 3T7BA 1OH9A 2BRXA 3QURA 3EK5A 1OHAA 3EK6A 3S6GA 2JI5A 3C1NA 2IJ9A 3LKKA 3L86A 3S6HA 4F6TB 4NDOB 3ZZIA 3ZZHA 2J0XA 4A7WA 4NDQB 2VA1A 2BRIA 4NDPA 3TVIA 4OLCA 3ZZGA 3WWNA 4USJA 2BMUA 3K52A 4JZ8A 2WE4A 2J5TA 2J0WA 2BNEA 3L76A 4NDOA 1GSJA 2AKOA 4NDPB 4JZ7A 3D41A 2R8VA 2CDQA 3K56A 3NWYA 4JZ9A 2J4KA 3B8GA 2HMFA 4F6TA 3AB4A 2BNFA 1GS5A 3AB2A 3K4OA 3C1MA 4NDRB 3QUNA 4KZTA 3D40A 2WE5A 3LL9A 2WXBA 1E19A 2J5VA 2V5HA 4AB7A 4A7XA 2AP9A 2OGXB 3D2PA 2J4JA 3QUOA 3ZZFA 3WWMA 4NDQA 3LL5A 4AXSA 2X2WA 2W21A 3C20A 2BUFA 3K4YA 3U6UA 3S6KA 2E9YA 2V4YA 2A1FA 1YBDA 2RD5A 3QVFA 1Z9DA 1OHBA 3D2MA 4NDRA 2R98A 4Q1TA 2BNDA 3KZFA 1B7BA 3QVHA 2JJ4A
chains in the Genus database with same CATH superfamily
2JJXA 4I49A 2BTYA 2OGXA 2J4LA 3AAWA 3T7BA 1OH9A 2BRXA 3QURA 3EK5A 1OHAA 3EK6A 3S6GA 2JI5A 3C1NA 2IJ9A 3LKKA 3L86A 3S6HA 4F6TB 4NDOB 3ZZIA 3ZZHA 2J0XA 4A7WA 4NDQB 2VA1A 2BRIA 4NDPA 3TVIA 4OLCA 3ZZGA 3WWNA 4USJA 2BMUA 3K52A 4JZ8A 2WE4A 2J5TA 2J0WA 2BNEA 3L76A 4NDOA 1GSJA 2AKOA 4NDPB 4JZ7A 3D41A 2R8VA 2CDQA 3K56A 3NWYA 4JZ9A 2J4KA 3B8GA 2HMFA 4F6TA 3AB4A 2BNFA 1GS5A 3AB2A 3K4OA 3C1MA 4NDRB 3QUNA 4KZTA 3D40A 2WE5A 3LL9A 2WXBA 1E19A 2J5VA 2V5HA 4AB7A 4A7XA 2AP9A 2OGXB 3D2PA 2J4JA 3QUOA 3ZZFA 3WWMA 4NDQA 3LL5A 4AXSA 2X2WA 2W21A 3C20A 2BUFA 3K4YA 3U6UA 3S6KA 2E9YA 2V4YA 2A1FA 1YBDA 2RD5A 3QVFA 1Z9DA 1OHBA 3D2MA 4NDRA 2R98A 4Q1TA 2BNDA 3KZFA 1B7BA 3QVHA 2JJ4A
chains in the Genus database with same CATH topology
2JJXA 4I49A 2BTYA 2OGXA 2J4LA 3AAWA 3T7BA 1OH9A 2BRXA 3QURA 3EK5A 1OHAA 3EK6A 3S6GA 2JI5A 3C1NA 2IJ9A 3LKKA 3L86A 3S6HA 4F6TB 4NDOB 3ZZIA 3ZZHA 2J0XA 4A7WA 4NDQB 2VA1A 2BRIA 4NDPA 3TVIA 4OLCA 3ZZGA 3WWNA 4USJA 2BMUA 3K52A 4JZ8A 2WE4A 2J5TA 2J0WA 2BNEA 3L76A 4NDOA 1GSJA 2AKOA 4NDPB 4JZ7A 3D41A 2R8VA 2CDQA 3K56A 3NWYA 4JZ9A 2J4KA 3B8GA 2HMFA 4F6TA 3AB4A 2BNFA 1GS5A 3AB2A 3K4OA 3C1MA 4NDRB 3QUNA 4KZTA 3D40A 2WE5A 3LL9A 2WXBA 1E19A 2J5VA 2V5HA 4AB7A 4A7XA 2AP9A 2OGXB 3D2PA 2J4JA 3QUOA 3ZZFA 3WWMA 4NDQA 3LL5A 4AXSA 2X2WA 2W21A 3C20A 2BUFA 3K4YA 3U6UA 3S6KA 2E9YA 2V4YA 2A1FA 1YBDA 2RD5A 3QVFA 1Z9DA 1OHBA 3D2MA 4NDRA 2R98A 4Q1TA 2BNDA 3KZFA 1B7BA 3QVHA 2JJ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JJX A;  4I49 A;  2BTY A;  2OGX A;  2J4L A;  3AAW A;  3T7B A;  1OH9 A;  2BRX A;  3QUR A;  3EK5 A;  1OHA A;  3EK6 A;  3S6G A;  2JI5 A;  3C1N A;  2IJ9 A;  3LKK A;  3L86 A;  3S6H A;  4F6T B;  4NDO B;  3ZZI A;  3ZZH A;  2J0X A;  4A7W A;  4NDQ B;  2VA1 A;  2BRI A;  4NDP A;  3TVI A;  4OLC A;  3ZZG A;  3WWN A;  4USJ A;  2BMU A;  3K52 A;  4JZ8 A;  2WE4 A;  2J5T A;  2J0W A;  2BNE A;  3L76 A;  4NDO A;  1GSJ A;  2AKO A;  4NDP B;  4JZ7 A;  3D41 A;  2R8V A;  2CDQ A;  3K56 A;  3NWY A;  4JZ9 A;  2J4K A;  3B8G A;  2HMF A;  4F6T A;  3AB4 A;  2BNF A;  1GS5 A;  3AB2 A;  3K4O A;  3C1M A;  4NDR B;  3QUN A;  4KZT A;  3D40 A;  2WE5 A;  3LL9 A;  2WXB A;  1E19 A;  2J5V A;  2V5H A;  4AB7 A;  4A7X A;  2AP9 A;  2OGX B;  3D2P A;  2J4J A;  3QUO A;  3ZZF A;  3WWM A;  4NDQ A;  3LL5 A;  4AXS A;  2X2W A;  2W21 A;  3C20 A;  2BUF A;  3K4Y A;  3U6U A;  3S6K A;  2E9Y A;  2V4Y A;  2A1F A;  1YBD A;  2RD5 A;  3QVF A;  1Z9D A;  1OHB A;  3D2M A;  4NDR A;  2R98 A;  4Q1T A;  2BND A;  3KZF A;  1B7B A;  3QVH A;  2JJ4 A; 
#chains in the Genus database with same CATH topology
 2JJX A;  4I49 A;  2BTY A;  2OGX A;  2J4L A;  3AAW A;  3T7B A;  1OH9 A;  2BRX A;  3QUR A;  3EK5 A;  1OHA A;  3EK6 A;  3S6G A;  2JI5 A;  3C1N A;  2IJ9 A;  3LKK A;  3L86 A;  3S6H A;  4F6T B;  4NDO B;  3ZZI A;  3ZZH A;  2J0X A;  4A7W A;  4NDQ B;  2VA1 A;  2BRI A;  4NDP A;  3TVI A;  4OLC A;  3ZZG A;  3WWN A;  4USJ A;  2BMU A;  3K52 A;  4JZ8 A;  2WE4 A;  2J5T A;  2J0W A;  2BNE A;  3L76 A;  4NDO A;  1GSJ A;  2AKO A;  4NDP B;  4JZ7 A;  3D41 A;  2R8V A;  2CDQ A;  3K56 A;  3NWY A;  4JZ9 A;  2J4K A;  3B8G A;  2HMF A;  4F6T A;  3AB4 A;  2BNF A;  1GS5 A;  3AB2 A;  3K4O A;  3C1M A;  4NDR B;  3QUN A;  4KZT A;  3D40 A;  2WE5 A;  3LL9 A;  2WXB A;  1E19 A;  2J5V A;  2V5H A;  4AB7 A;  4A7X A;  2AP9 A;  2OGX B;  3D2P A;  2J4J A;  3QUO A;  3ZZF A;  3WWM A;  4NDQ A;  3LL5 A;  4AXS A;  2X2W A;  2W21 A;  3C20 A;  2BUF A;  3K4Y A;  3U6U A;  3S6K A;  2E9Y A;  2V4Y A;  2A1F A;  1YBD A;  2RD5 A;  3QVF A;  1Z9D A;  1OHB A;  3D2M A;  4NDR A;  2R98 A;  4Q1T A;  2BND A;  3KZF A;  1B7B A;  3QVH A;  2JJ4 A; 
#chains in the Genus database with same CATH homology
 2JJX A;  4I49 A;  2BTY A;  2OGX A;  2J4L A;  3AAW A;  3T7B A;  1OH9 A;  2BRX A;  3QUR A;  3EK5 A;  1OHA A;  3EK6 A;  3S6G A;  2JI5 A;  3C1N A;  2IJ9 A;  3LKK A;  3L86 A;  3S6H A;  4F6T B;  4NDO B;  3ZZI A;  3ZZH A;  2J0X A;  4A7W A;  4NDQ B;  2VA1 A;  2BRI A;  4NDP A;  3TVI A;  4OLC A;  3ZZG A;  3WWN A;  4USJ A;  2BMU A;  3K52 A;  4JZ8 A;  2WE4 A;  2J5T A;  2J0W A;  2BNE A;  3L76 A;  4NDO A;  1GSJ A;  2AKO A;  4NDP B;  4JZ7 A;  3D41 A;  2R8V A;  2CDQ A;  3K56 A;  3NWY A;  4JZ9 A;  2J4K A;  3B8G A;  2HMF A;  4F6T A;  3AB4 A;  2BNF A;  1GS5 A;  3AB2 A;  3K4O A;  3C1M A;  4NDR B;  3QUN A;  4KZT A;  3D40 A;  2WE5 A;  3LL9 A;  2WXB A;  1E19 A;  2J5V A;  2V5H A;  4AB7 A;  4A7X A;  2AP9 A;  2OGX B;  3D2P A;  2J4J A;  3QUO A;  3ZZF A;  3WWM A;  4NDQ A;  3LL5 A;  4AXS A;  2X2W A;  2W21 A;  3C20 A;  2BUF A;  3K4Y A;  3U6U A;  3S6K A;  2E9Y A;  2V4Y A;  2A1F A;  1YBD A;  2RD5 A;  3QVF A;  1Z9D A;  1OHB A;  3D2M A;  4NDR A;  2R98 A;  4Q1T A;  2BND A;  3KZF A;  1B7B A;  3QVH A;  2JJ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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