3K4YA

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4yA00
3KZFA 3U6UA 3QVHA 2V5HA 1OHAA 3ZZHA 2VA1A 2IJ9A 2WE4A 3C1MA 3L86A 4NDOB 4NDPB 2BTYA 3T7BA 3ZZGA 3K4OA 1OHBA 3D41A 3K4YA 4AXSA 4F6TB 3NWYA 2BNDA 3LL9A 2WXBA 2A1FA 4NDPA 4A7XA 4NDRB 1GSJA 3K56A 4F6TA 1GS5A 3ZZIA 4A7WA 4AB7A 2AKOA 2JJ4A 4OLCA 3AB2A 3AB4A 2JI5A 2V4YA 2BNEA 2R98A 4NDRA 2J4LA 3LKKA 4USJA 4KZTA 2J5TA 3S6KA 2BRXA 2W21A 3C1NA 2J4JA 3TVIA 2HMFA 2JJXA 2BUFA 2J0WA 3S6GA 3B8GA 3S6HA 2J0XA 4JZ9A 2J4KA 1OH9A 2BMUA 4I49A 2WE5A 3QUNA 3AAWA 1Z9DA 3EK5A 1B7BA 3EK6A 2X2WA 3D2MA 3WWNA 1YBDA 2BNFA 1E19A 3K52A 2OGXB 4JZ8A 2BRIA 3L76A 2R8VA 4Q1TA 2J5VA 2AP9A 3QUOA 3QVFA 3ZZFA 4JZ7A 4NDQA 2RD5A 3QURA 3D2PA 2CDQA 2OGXA 3LL5A 3WWMA 2E9YA 3C20A 3D40A 4NDQB 4NDOA
chains in the Genus database with same CATH superfamily
3KZFA 3U6UA 3QVHA 2V5HA 1OHAA 3ZZHA 2VA1A 2IJ9A 2WE4A 3C1MA 3L86A 4NDOB 4NDPB 2BTYA 3T7BA 3ZZGA 3K4OA 1OHBA 3D41A 3K4YA 4AXSA 4F6TB 3NWYA 2BNDA 3LL9A 2WXBA 2A1FA 4NDPA 4A7XA 4NDRB 1GSJA 3K56A 4F6TA 1GS5A 3ZZIA 4A7WA 4AB7A 2AKOA 2JJ4A 4OLCA 3AB2A 3AB4A 2JI5A 2V4YA 2BNEA 2R98A 4NDRA 2J4LA 3LKKA 4USJA 4KZTA 2J5TA 3S6KA 2BRXA 2W21A 3C1NA 2J4JA 3TVIA 2HMFA 2JJXA 2BUFA 2J0WA 3S6GA 3B8GA 3S6HA 2J0XA 4JZ9A 2J4KA 1OH9A 2BMUA 4I49A 2WE5A 3QUNA 3AAWA 1Z9DA 3EK5A 1B7BA 3EK6A 2X2WA 3D2MA 3WWNA 1YBDA 2BNFA 1E19A 3K52A 2OGXB 4JZ8A 2BRIA 3L76A 2R8VA 4Q1TA 2J5VA 2AP9A 3QUOA 3QVFA 3ZZFA 4JZ7A 4NDQA 2RD5A 3QURA 3D2PA 2CDQA 2OGXA 3LL5A 3WWMA 2E9YA 3C20A 3D40A 4NDQB 4NDOA
chains in the Genus database with same CATH topology
3KZFA 3U6UA 3QVHA 2V5HA 1OHAA 3ZZHA 2VA1A 2IJ9A 2WE4A 3C1MA 3L86A 4NDOB 4NDPB 2BTYA 3T7BA 3ZZGA 3K4OA 1OHBA 3D41A 3K4YA 4AXSA 4F6TB 3NWYA 2BNDA 3LL9A 2WXBA 2A1FA 4NDPA 4A7XA 4NDRB 1GSJA 3K56A 4F6TA 1GS5A 3ZZIA 4A7WA 4AB7A 2AKOA 2JJ4A 4OLCA 3AB2A 3AB4A 2JI5A 2V4YA 2BNEA 2R98A 4NDRA 2J4LA 3LKKA 4USJA 4KZTA 2J5TA 3S6KA 2BRXA 2W21A 3C1NA 2J4JA 3TVIA 2HMFA 2JJXA 2BUFA 2J0WA 3S6GA 3B8GA 3S6HA 2J0XA 4JZ9A 2J4KA 1OH9A 2BMUA 4I49A 2WE5A 3QUNA 3AAWA 1Z9DA 3EK5A 1B7BA 3EK6A 2X2WA 3D2MA 3WWNA 1YBDA 2BNFA 1E19A 3K52A 2OGXB 4JZ8A 2BRIA 3L76A 2R8VA 4Q1TA 2J5VA 2AP9A 3QUOA 3QVFA 3ZZFA 4JZ7A 4NDQA 2RD5A 3QURA 3D2PA 2CDQA 2OGXA 3LL5A 3WWMA 2E9YA 3C20A 3D40A 4NDQB 4NDOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KZF A;  3U6U A;  3QVH A;  2V5H A;  1OHA A;  3ZZH A;  2VA1 A;  2IJ9 A;  2WE4 A;  3C1M A;  3L86 A;  4NDO B;  4NDP B;  2BTY A;  3T7B A;  3ZZG A;  3K4O A;  1OHB A;  3D41 A;  3K4Y A;  4AXS A;  4F6T B;  3NWY A;  2BND A;  3LL9 A;  2WXB A;  2A1F A;  4NDP A;  4A7X A;  4NDR B;  1GSJ A;  3K56 A;  4F6T A;  1GS5 A;  3ZZI A;  4A7W A;  4AB7 A;  2AKO A;  2JJ4 A;  4OLC A;  3AB2 A;  3AB4 A;  2JI5 A;  2V4Y A;  2BNE A;  2R98 A;  4NDR A;  2J4L A;  3LKK A;  4USJ A;  4KZT A;  2J5T A;  3S6K A;  2BRX A;  2W21 A;  3C1N A;  2J4J A;  3TVI A;  2HMF A;  2JJX A;  2BUF A;  2J0W A;  3S6G A;  3B8G A;  3S6H A;  2J0X A;  4JZ9 A;  2J4K A;  1OH9 A;  2BMU A;  4I49 A;  2WE5 A;  3QUN A;  3AAW A;  1Z9D A;  3EK5 A;  1B7B A;  3EK6 A;  2X2W A;  3D2M A;  3WWN A;  1YBD A;  2BNF A;  1E19 A;  3K52 A;  2OGX B;  4JZ8 A;  2BRI A;  3L76 A;  2R8V A;  4Q1T A;  2J5V A;  2AP9 A;  3QUO A;  3QVF A;  3ZZF A;  4JZ7 A;  4NDQ A;  2RD5 A;  3QUR A;  3D2P A;  2CDQ A;  2OGX A;  3LL5 A;  3WWM A;  2E9Y A;  3C20 A;  3D40 A;  4NDQ B;  4NDO A; 
#chains in the Genus database with same CATH topology
 3KZF A;  3U6U A;  3QVH A;  2V5H A;  1OHA A;  3ZZH A;  2VA1 A;  2IJ9 A;  2WE4 A;  3C1M A;  3L86 A;  4NDO B;  4NDP B;  2BTY A;  3T7B A;  3ZZG A;  3K4O A;  1OHB A;  3D41 A;  3K4Y A;  4AXS A;  4F6T B;  3NWY A;  2BND A;  3LL9 A;  2WXB A;  2A1F A;  4NDP A;  4A7X A;  4NDR B;  1GSJ A;  3K56 A;  4F6T A;  1GS5 A;  3ZZI A;  4A7W A;  4AB7 A;  2AKO A;  2JJ4 A;  4OLC A;  3AB2 A;  3AB4 A;  2JI5 A;  2V4Y A;  2BNE A;  2R98 A;  4NDR A;  2J4L A;  3LKK A;  4USJ A;  4KZT A;  2J5T A;  3S6K A;  2BRX A;  2W21 A;  3C1N A;  2J4J A;  3TVI A;  2HMF A;  2JJX A;  2BUF A;  2J0W A;  3S6G A;  3B8G A;  3S6H A;  2J0X A;  4JZ9 A;  2J4K A;  1OH9 A;  2BMU A;  4I49 A;  2WE5 A;  3QUN A;  3AAW A;  1Z9D A;  3EK5 A;  1B7B A;  3EK6 A;  2X2W A;  3D2M A;  3WWN A;  1YBD A;  2BNF A;  1E19 A;  3K52 A;  2OGX B;  4JZ8 A;  2BRI A;  3L76 A;  2R8V A;  4Q1T A;  2J5V A;  2AP9 A;  3QUO A;  3QVF A;  3ZZF A;  4JZ7 A;  4NDQ A;  2RD5 A;  3QUR A;  3D2P A;  2CDQ A;  2OGX A;  3LL5 A;  3WWM A;  2E9Y A;  3C20 A;  3D40 A;  4NDQ B;  4NDO A; 
#chains in the Genus database with same CATH homology
 3KZF A;  3U6U A;  3QVH A;  2V5H A;  1OHA A;  3ZZH A;  2VA1 A;  2IJ9 A;  2WE4 A;  3C1M A;  3L86 A;  4NDO B;  4NDP B;  2BTY A;  3T7B A;  3ZZG A;  3K4O A;  1OHB A;  3D41 A;  3K4Y A;  4AXS A;  4F6T B;  3NWY A;  2BND A;  3LL9 A;  2WXB A;  2A1F A;  4NDP A;  4A7X A;  4NDR B;  1GSJ A;  3K56 A;  4F6T A;  1GS5 A;  3ZZI A;  4A7W A;  4AB7 A;  2AKO A;  2JJ4 A;  4OLC A;  3AB2 A;  3AB4 A;  2JI5 A;  2V4Y A;  2BNE A;  2R98 A;  4NDR A;  2J4L A;  3LKK A;  4USJ A;  4KZT A;  2J5T A;  3S6K A;  2BRX A;  2W21 A;  3C1N A;  2J4J A;  3TVI A;  2HMF A;  2JJX A;  2BUF A;  2J0W A;  3S6G A;  3B8G A;  3S6H A;  2J0X A;  4JZ9 A;  2J4K A;  1OH9 A;  2BMU A;  4I49 A;  2WE5 A;  3QUN A;  3AAW A;  1Z9D A;  3EK5 A;  1B7B A;  3EK6 A;  2X2W A;  3D2M A;  3WWN A;  1YBD A;  2BNF A;  1E19 A;  3K52 A;  2OGX B;  4JZ8 A;  2BRI A;  3L76 A;  2R8V A;  4Q1T A;  2J5V A;  2AP9 A;  3QUO A;  3QVF A;  3ZZF A;  4JZ7 A;  4NDQ A;  2RD5 A;  3QUR A;  3D2P A;  2CDQ A;  2OGX A;  3LL5 A;  3WWM A;  2E9Y A;  3C20 A;  3D40 A;  4NDQ B;  4NDO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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