3K4YA

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
b'MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4yA00
4USJA 1GS5A 2E9YA 2X2WA 2BNEA 3AB4A 2HMFA 2BNFA 3K52A 2J5VA 3QURA 2J4KA 2R8VA 4A7XA 2BMUA 2OGXB 3QVFA 2BNDA 3QVHA 3ZZHA 2WXBA 4NDOB 2IJ9A 2V4YA 4NDQA 3C20A 2J4LA 2J4JA 4A7WA 2AKOA 3C1NA 4JZ7A 4KZTA 4AB7A 2VA1A 3LL5A 3U6UA 4NDPB 2AP9A 4NDOA 3S6HA 4Q1TA 2J0XA 2JI5A 3QUNA 3K56A 1GSJA 3AAWA 2WE4A 2R98A 3L86A 4JZ9A 4F6TB 4I49A 2BRIA 2J0WA 3LKKA 3K4YA 4NDRB 2W21A 3L76A 3NWYA 3D41A 2JJXA 2OGXA 3EK6A 3ZZFA 3S6GA 2V5HA 2BUFA 2JJ4A 3B8GA 3D2MA 4OLCA 3QUOA 4NDPA 2BTYA 2CDQA 2RD5A 4AXSA 1Z9DA 4JZ8A 1OH9A 3ZZIA 3AB2A 3C1MA 4F6TA 3KZFA 3T7BA 1YBDA 3D40A 2BRXA 3TVIA 3K4OA 3LL9A 4NDRA 3EK5A 4NDQB 2J5TA 1E19A 2A1FA 3D2PA 3WWMA 3S6KA 1OHAA 1OHBA 1B7BA 3WWNA 2WE5A 3ZZGA
chains in the Genus database with same CATH superfamily
4USJA 1GS5A 2E9YA 2X2WA 2BNEA 3AB4A 2HMFA 2BNFA 3K52A 2J5VA 3QURA 2J4KA 2R8VA 4A7XA 2BMUA 2OGXB 3QVFA 2BNDA 3QVHA 3ZZHA 2WXBA 4NDOB 2IJ9A 2V4YA 4NDQA 3C20A 2J4LA 2J4JA 4A7WA 2AKOA 3C1NA 4JZ7A 4KZTA 4AB7A 2VA1A 3LL5A 3U6UA 4NDPB 2AP9A 4NDOA 3S6HA 4Q1TA 2J0XA 2JI5A 3QUNA 3K56A 1GSJA 3AAWA 2WE4A 2R98A 3L86A 4JZ9A 4F6TB 4I49A 2BRIA 2J0WA 3LKKA 3K4YA 4NDRB 2W21A 3L76A 3NWYA 3D41A 2JJXA 2OGXA 3EK6A 3ZZFA 3S6GA 2V5HA 2BUFA 2JJ4A 3B8GA 3D2MA 4OLCA 3QUOA 4NDPA 2BTYA 2CDQA 2RD5A 4AXSA 1Z9DA 4JZ8A 1OH9A 3ZZIA 3AB2A 3C1MA 4F6TA 3KZFA 3T7BA 1YBDA 3D40A 2BRXA 3TVIA 3K4OA 3LL9A 4NDRA 3EK5A 4NDQB 2J5TA 1E19A 2A1FA 3D2PA 3WWMA 3S6KA 1OHAA 1OHBA 1B7BA 3WWNA 2WE5A 3ZZGA
chains in the Genus database with same CATH topology
4USJA 1GS5A 2E9YA 2X2WA 2BNEA 3AB4A 2HMFA 2BNFA 3K52A 2J5VA 3QURA 2J4KA 2R8VA 4A7XA 2BMUA 2OGXB 3QVFA 2BNDA 3QVHA 3ZZHA 2WXBA 4NDOB 2IJ9A 2V4YA 4NDQA 3C20A 2J4LA 2J4JA 4A7WA 2AKOA 3C1NA 4JZ7A 4KZTA 4AB7A 2VA1A 3LL5A 3U6UA 4NDPB 2AP9A 4NDOA 3S6HA 4Q1TA 2J0XA 2JI5A 3QUNA 3K56A 1GSJA 3AAWA 2WE4A 2R98A 3L86A 4JZ9A 4F6TB 4I49A 2BRIA 2J0WA 3LKKA 3K4YA 4NDRB 2W21A 3L76A 3NWYA 3D41A 2JJXA 2OGXA 3EK6A 3ZZFA 3S6GA 2V5HA 2BUFA 2JJ4A 3B8GA 3D2MA 4OLCA 3QUOA 4NDPA 2BTYA 2CDQA 2RD5A 4AXSA 1Z9DA 4JZ8A 1OH9A 3ZZIA 3AB2A 3C1MA 4F6TA 3KZFA 3T7BA 1YBDA 3D40A 2BRXA 3TVIA 3K4OA 3LL9A 4NDRA 3EK5A 4NDQB 2J5TA 1E19A 2A1FA 3D2PA 3WWMA 3S6KA 1OHAA 1OHBA 1B7BA 3WWNA 2WE5A 3ZZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4USJ A;  1GS5 A;  2E9Y A;  2X2W A;  2BNE A;  3AB4 A;  2HMF A;  2BNF A;  3K52 A;  2J5V A;  3QUR A;  2J4K A;  2R8V A;  4A7X A;  2BMU A;  2OGX B;  3QVF A;  2BND A;  3QVH A;  3ZZH A;  2WXB A;  4NDO B;  2IJ9 A;  2V4Y A;  4NDQ A;  3C20 A;  2J4L A;  2J4J A;  4A7W A;  2AKO A;  3C1N A;  4JZ7 A;  4KZT A;  4AB7 A;  2VA1 A;  3LL5 A;  3U6U A;  4NDP B;  2AP9 A;  4NDO A;  3S6H A;  4Q1T A;  2J0X A;  2JI5 A;  3QUN A;  3K56 A;  1GSJ A;  3AAW A;  2WE4 A;  2R98 A;  3L86 A;  4JZ9 A;  4F6T B;  4I49 A;  2BRI A;  2J0W A;  3LKK A;  3K4Y A;  4NDR B;  2W21 A;  3L76 A;  3NWY A;  3D41 A;  2JJX A;  2OGX A;  3EK6 A;  3ZZF A;  3S6G A;  2V5H A;  2BUF A;  2JJ4 A;  3B8G A;  3D2M A;  4OLC A;  3QUO A;  4NDP A;  2BTY A;  2CDQ A;  2RD5 A;  4AXS A;  1Z9D A;  4JZ8 A;  1OH9 A;  3ZZI A;  3AB2 A;  3C1M A;  4F6T A;  3KZF A;  3T7B A;  1YBD A;  3D40 A;  2BRX A;  3TVI A;  3K4O A;  3LL9 A;  4NDR A;  3EK5 A;  4NDQ B;  2J5T A;  1E19 A;  2A1F A;  3D2P A;  3WWM A;  3S6K A;  1OHA A;  1OHB A;  1B7B A;  3WWN A;  2WE5 A;  3ZZG A; 
#chains in the Genus database with same CATH topology
 4USJ A;  1GS5 A;  2E9Y A;  2X2W A;  2BNE A;  3AB4 A;  2HMF A;  2BNF A;  3K52 A;  2J5V A;  3QUR A;  2J4K A;  2R8V A;  4A7X A;  2BMU A;  2OGX B;  3QVF A;  2BND A;  3QVH A;  3ZZH A;  2WXB A;  4NDO B;  2IJ9 A;  2V4Y A;  4NDQ A;  3C20 A;  2J4L A;  2J4J A;  4A7W A;  2AKO A;  3C1N A;  4JZ7 A;  4KZT A;  4AB7 A;  2VA1 A;  3LL5 A;  3U6U A;  4NDP B;  2AP9 A;  4NDO A;  3S6H A;  4Q1T A;  2J0X A;  2JI5 A;  3QUN A;  3K56 A;  1GSJ A;  3AAW A;  2WE4 A;  2R98 A;  3L86 A;  4JZ9 A;  4F6T B;  4I49 A;  2BRI A;  2J0W A;  3LKK A;  3K4Y A;  4NDR B;  2W21 A;  3L76 A;  3NWY A;  3D41 A;  2JJX A;  2OGX A;  3EK6 A;  3ZZF A;  3S6G A;  2V5H A;  2BUF A;  2JJ4 A;  3B8G A;  3D2M A;  4OLC A;  3QUO A;  4NDP A;  2BTY A;  2CDQ A;  2RD5 A;  4AXS A;  1Z9D A;  4JZ8 A;  1OH9 A;  3ZZI A;  3AB2 A;  3C1M A;  4F6T A;  3KZF A;  3T7B A;  1YBD A;  3D40 A;  2BRX A;  3TVI A;  3K4O A;  3LL9 A;  4NDR A;  3EK5 A;  4NDQ B;  2J5T A;  1E19 A;  2A1F A;  3D2P A;  3WWM A;  3S6K A;  1OHA A;  1OHB A;  1B7B A;  3WWN A;  2WE5 A;  3ZZG A; 
#chains in the Genus database with same CATH homology
 4USJ A;  1GS5 A;  2E9Y A;  2X2W A;  2BNE A;  3AB4 A;  2HMF A;  2BNF A;  3K52 A;  2J5V A;  3QUR A;  2J4K A;  2R8V A;  4A7X A;  2BMU A;  2OGX B;  3QVF A;  2BND A;  3QVH A;  3ZZH A;  2WXB A;  4NDO B;  2IJ9 A;  2V4Y A;  4NDQ A;  3C20 A;  2J4L A;  2J4J A;  4A7W A;  2AKO A;  3C1N A;  4JZ7 A;  4KZT A;  4AB7 A;  2VA1 A;  3LL5 A;  3U6U A;  4NDP B;  2AP9 A;  4NDO A;  3S6H A;  4Q1T A;  2J0X A;  2JI5 A;  3QUN A;  3K56 A;  1GSJ A;  3AAW A;  2WE4 A;  2R98 A;  3L86 A;  4JZ9 A;  4F6T B;  4I49 A;  2BRI A;  2J0W A;  3LKK A;  3K4Y A;  4NDR B;  2W21 A;  3L76 A;  3NWY A;  3D41 A;  2JJX A;  2OGX A;  3EK6 A;  3ZZF A;  3S6G A;  2V5H A;  2BUF A;  2JJ4 A;  3B8G A;  3D2M A;  4OLC A;  3QUO A;  4NDP A;  2BTY A;  2CDQ A;  2RD5 A;  4AXS A;  1Z9D A;  4JZ8 A;  1OH9 A;  3ZZI A;  3AB2 A;  3C1M A;  4F6T A;  3KZF A;  3T7B A;  1YBD A;  3D40 A;  2BRX A;  3TVI A;  3K4O A;  3LL9 A;  4NDR A;  3EK5 A;  4NDQ B;  2J5T A;  1E19 A;  2A1F A;  3D2P A;  3WWM A;  3S6K A;  1OHA A;  1OHB A;  1B7B A;  3WWN A;  2WE5 A;  3ZZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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