3K4YA

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ipp
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4yA00
3QURA 1B7BA 4OLCA 2BNDA 2J4LA 3T7BA 3QUOA 3WWNA 4F6TA 3L86A 2A1FA 2BRXA 3ZZIA 2AKOA 3S6HA 4USJA 2J0XA 2R98A 4A7WA 4I49A 3AB2A 3K52A 3L76A 3WWMA 2BMUA 1YBDA 3C1MA 2J0WA 2J4JA 2VA1A 2R8VA 2BUFA 4A7XA 1GSJA 2OGXB 2JJ4A 3K4OA 3S6KA 3D2MA 2HMFA 2WE5A 2BNEA 4NDOB 4JZ9A 3AAWA 2OGXA 3AB4A 4KZTA 2X2WA 3QVFA 2BTYA 3LKKA 2V4YA 3K56A 4NDRB 3U6UA 2V5HA 2CDQA 2IJ9A 1Z9DA 2WXBA 3ZZHA 3LL9A 4AXSA 4NDRA 3NWYA 3S6GA 3K4YA 4JZ8A 4NDQB 2WE4A 2JJXA 1OHBA 4JZ7A 3B8GA 4NDOA 2JI5A 3LL5A 3ZZFA 4NDPB 2J5VA 1OH9A 3ZZGA 3D2PA 2E9YA 1E19A 4F6TB 4AB7A 2BRIA 3C20A 3QUNA 4NDPA 3QVHA 3D41A 2RD5A 1GS5A 3KZFA 4Q1TA 2BNFA 2J5TA 3TVIA 3EK6A 1OHAA 2J4KA 2AP9A 2W21A 4NDQA 3D40A 3EK5A 3C1NA
chains in the Genus database with same CATH superfamily
3QURA 1B7BA 4OLCA 2BNDA 2J4LA 3T7BA 3QUOA 3WWNA 4F6TA 3L86A 2A1FA 2BRXA 3ZZIA 2AKOA 3S6HA 4USJA 2J0XA 2R98A 4A7WA 4I49A 3AB2A 3K52A 3L76A 3WWMA 2BMUA 1YBDA 3C1MA 2J0WA 2J4JA 2VA1A 2R8VA 2BUFA 4A7XA 1GSJA 2OGXB 2JJ4A 3K4OA 3S6KA 3D2MA 2HMFA 2WE5A 2BNEA 4NDOB 4JZ9A 3AAWA 2OGXA 3AB4A 4KZTA 2X2WA 3QVFA 2BTYA 3LKKA 2V4YA 3K56A 4NDRB 3U6UA 2V5HA 2CDQA 2IJ9A 1Z9DA 2WXBA 3ZZHA 3LL9A 4AXSA 4NDRA 3NWYA 3S6GA 3K4YA 4JZ8A 4NDQB 2WE4A 2JJXA 1OHBA 4JZ7A 3B8GA 4NDOA 2JI5A 3LL5A 3ZZFA 4NDPB 2J5VA 1OH9A 3ZZGA 3D2PA 2E9YA 1E19A 4F6TB 4AB7A 2BRIA 3C20A 3QUNA 4NDPA 3QVHA 3D41A 2RD5A 1GS5A 3KZFA 4Q1TA 2BNFA 2J5TA 3TVIA 3EK6A 1OHAA 2J4KA 2AP9A 2W21A 4NDQA 3D40A 3EK5A 3C1NA
chains in the Genus database with same CATH topology
3QURA 1B7BA 4OLCA 2BNDA 2J4LA 3T7BA 3QUOA 3WWNA 4F6TA 3L86A 2A1FA 2BRXA 3ZZIA 2AKOA 3S6HA 4USJA 2J0XA 2R98A 4A7WA 4I49A 3AB2A 3K52A 3L76A 3WWMA 2BMUA 1YBDA 3C1MA 2J0WA 2J4JA 2VA1A 2R8VA 2BUFA 4A7XA 1GSJA 2OGXB 2JJ4A 3K4OA 3S6KA 3D2MA 2HMFA 2WE5A 2BNEA 4NDOB 4JZ9A 3AAWA 2OGXA 3AB4A 4KZTA 2X2WA 3QVFA 2BTYA 3LKKA 2V4YA 3K56A 4NDRB 3U6UA 2V5HA 2CDQA 2IJ9A 1Z9DA 2WXBA 3ZZHA 3LL9A 4AXSA 4NDRA 3NWYA 3S6GA 3K4YA 4JZ8A 4NDQB 2WE4A 2JJXA 1OHBA 4JZ7A 3B8GA 4NDOA 2JI5A 3LL5A 3ZZFA 4NDPB 2J5VA 1OH9A 3ZZGA 3D2PA 2E9YA 1E19A 4F6TB 4AB7A 2BRIA 3C20A 3QUNA 4NDPA 3QVHA 3D41A 2RD5A 1GS5A 3KZFA 4Q1TA 2BNFA 2J5TA 3TVIA 3EK6A 1OHAA 2J4KA 2AP9A 2W21A 4NDQA 3D40A 3EK5A 3C1NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QUR A;  1B7B A;  4OLC A;  2BND A;  2J4L A;  3T7B A;  3QUO A;  3WWN A;  4F6T A;  3L86 A;  2A1F A;  2BRX A;  3ZZI A;  2AKO A;  3S6H A;  4USJ A;  2J0X A;  2R98 A;  4A7W A;  4I49 A;  3AB2 A;  3K52 A;  3L76 A;  3WWM A;  2BMU A;  1YBD A;  3C1M A;  2J0W A;  2J4J A;  2VA1 A;  2R8V A;  2BUF A;  4A7X A;  1GSJ A;  2OGX B;  2JJ4 A;  3K4O A;  3S6K A;  3D2M A;  2HMF A;  2WE5 A;  2BNE A;  4NDO B;  4JZ9 A;  3AAW A;  2OGX A;  3AB4 A;  4KZT A;  2X2W A;  3QVF A;  2BTY A;  3LKK A;  2V4Y A;  3K56 A;  4NDR B;  3U6U A;  2V5H A;  2CDQ A;  2IJ9 A;  1Z9D A;  2WXB A;  3ZZH A;  3LL9 A;  4AXS A;  4NDR A;  3NWY A;  3S6G A;  3K4Y A;  4JZ8 A;  4NDQ B;  2WE4 A;  2JJX A;  1OHB A;  4JZ7 A;  3B8G A;  4NDO A;  2JI5 A;  3LL5 A;  3ZZF A;  4NDP B;  2J5V A;  1OH9 A;  3ZZG A;  3D2P A;  2E9Y A;  1E19 A;  4F6T B;  4AB7 A;  2BRI A;  3C20 A;  3QUN A;  4NDP A;  3QVH A;  3D41 A;  2RD5 A;  1GS5 A;  3KZF A;  4Q1T A;  2BNF A;  2J5T A;  3TVI A;  3EK6 A;  1OHA A;  2J4K A;  2AP9 A;  2W21 A;  4NDQ A;  3D40 A;  3EK5 A;  3C1N A; 
#chains in the Genus database with same CATH topology
 3QUR A;  1B7B A;  4OLC A;  2BND A;  2J4L A;  3T7B A;  3QUO A;  3WWN A;  4F6T A;  3L86 A;  2A1F A;  2BRX A;  3ZZI A;  2AKO A;  3S6H A;  4USJ A;  2J0X A;  2R98 A;  4A7W A;  4I49 A;  3AB2 A;  3K52 A;  3L76 A;  3WWM A;  2BMU A;  1YBD A;  3C1M A;  2J0W A;  2J4J A;  2VA1 A;  2R8V A;  2BUF A;  4A7X A;  1GSJ A;  2OGX B;  2JJ4 A;  3K4O A;  3S6K A;  3D2M A;  2HMF A;  2WE5 A;  2BNE A;  4NDO B;  4JZ9 A;  3AAW A;  2OGX A;  3AB4 A;  4KZT A;  2X2W A;  3QVF A;  2BTY A;  3LKK A;  2V4Y A;  3K56 A;  4NDR B;  3U6U A;  2V5H A;  2CDQ A;  2IJ9 A;  1Z9D A;  2WXB A;  3ZZH A;  3LL9 A;  4AXS A;  4NDR A;  3NWY A;  3S6G A;  3K4Y A;  4JZ8 A;  4NDQ B;  2WE4 A;  2JJX A;  1OHB A;  4JZ7 A;  3B8G A;  4NDO A;  2JI5 A;  3LL5 A;  3ZZF A;  4NDP B;  2J5V A;  1OH9 A;  3ZZG A;  3D2P A;  2E9Y A;  1E19 A;  4F6T B;  4AB7 A;  2BRI A;  3C20 A;  3QUN A;  4NDP A;  3QVH A;  3D41 A;  2RD5 A;  1GS5 A;  3KZF A;  4Q1T A;  2BNF A;  2J5T A;  3TVI A;  3EK6 A;  1OHA A;  2J4K A;  2AP9 A;  2W21 A;  4NDQ A;  3D40 A;  3EK5 A;  3C1N A; 
#chains in the Genus database with same CATH homology
 3QUR A;  1B7B A;  4OLC A;  2BND A;  2J4L A;  3T7B A;  3QUO A;  3WWN A;  4F6T A;  3L86 A;  2A1F A;  2BRX A;  3ZZI A;  2AKO A;  3S6H A;  4USJ A;  2J0X A;  2R98 A;  4A7W A;  4I49 A;  3AB2 A;  3K52 A;  3L76 A;  3WWM A;  2BMU A;  1YBD A;  3C1M A;  2J0W A;  2J4J A;  2VA1 A;  2R8V A;  2BUF A;  4A7X A;  1GSJ A;  2OGX B;  2JJ4 A;  3K4O A;  3S6K A;  3D2M A;  2HMF A;  2WE5 A;  2BNE A;  4NDO B;  4JZ9 A;  3AAW A;  2OGX A;  3AB4 A;  4KZT A;  2X2W A;  3QVF A;  2BTY A;  3LKK A;  2V4Y A;  3K56 A;  4NDR B;  3U6U A;  2V5H A;  2CDQ A;  2IJ9 A;  1Z9D A;  2WXB A;  3ZZH A;  3LL9 A;  4AXS A;  4NDR A;  3NWY A;  3S6G A;  3K4Y A;  4JZ8 A;  4NDQ B;  2WE4 A;  2JJX A;  1OHB A;  4JZ7 A;  3B8G A;  4NDO A;  2JI5 A;  3LL5 A;  3ZZF A;  4NDP B;  2J5V A;  1OH9 A;  3ZZG A;  3D2P A;  2E9Y A;  1E19 A;  4F6T B;  4AB7 A;  2BRI A;  3C20 A;  3QUN A;  4NDP A;  3QVH A;  3D41 A;  2RD5 A;  1GS5 A;  3KZF A;  4Q1T A;  2BNF A;  2J5T A;  3TVI A;  3EK6 A;  1OHA A;  2J4K A;  2AP9 A;  2W21 A;  4NDQ A;  3D40 A;  3EK5 A;  3C1N A; 
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similar chains in the Genus database (?% sequence similarity)
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