3K4OA

Crystal structure of isopentenyl phosphate kinase from methanocaldococcus jannaschii
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4oA00
2J4LA 3L76A 3QUNA 4AB7A 2J5TA 2WE5A 2AP9A 2JJ4A 4F6TA 3K52A 2A1FA 3K4YA 3ZZHA 2BNDA 2E9YA 1Z9DA 2J0WA 2W21A 3LL9A 2J4JA 2OGXB 2WXBA 2BTYA 2X2WA 3K4OA 4JZ8A 3QVFA 1YBDA 2OGXA 2V5HA 3ZZGA 2R98A 3AB2A 2J4KA 3AB4A 3TVIA 4NDRB 4USJA 4Q1TA 2BMUA 1OHBA 3K56A 2R8VA 4OLCA 2JJXA 3L86A 1B7BA 4A7XA 2VA1A 3C1MA 4A7WA 3S6HA 2J0XA 3D41A 2J5VA 1OH9A 1E19A 1OHAA 3QUOA 1GSJA 3NWYA 3T7BA 3QVHA 3KZFA 3D2PA 4NDPB 3D40A 3S6KA 3EK5A 3ZZIA 4JZ7A 4JZ9A 4NDQB 3C20A 3EK6A 4NDOB 2BRIA 4NDRA 3D2MA 2JI5A 2BUFA 4NDQA 4NDOA 2HMFA 4KZTA 2WE4A 2CDQA 2BNEA 2RD5A 3C1NA 4F6TB 1GS5A 3WWNA 3WWMA 4NDPA 2BRXA 3U6UA 2BNFA 3B8GA 2IJ9A 3AAWA 4I49A 3LKKA 2AKOA 3ZZFA 3S6GA 3QURA 2V4YA 3LL5A 4AXSA
chains in the Genus database with same CATH superfamily
2J4LA 3L76A 3QUNA 4AB7A 2J5TA 2WE5A 2AP9A 2JJ4A 4F6TA 3K52A 2A1FA 3K4YA 3ZZHA 2BNDA 2E9YA 1Z9DA 2J0WA 2W21A 3LL9A 2J4JA 2OGXB 2WXBA 2BTYA 2X2WA 3K4OA 4JZ8A 3QVFA 1YBDA 2OGXA 2V5HA 3ZZGA 2R98A 3AB2A 2J4KA 3AB4A 3TVIA 4NDRB 4USJA 4Q1TA 2BMUA 1OHBA 3K56A 2R8VA 4OLCA 2JJXA 3L86A 1B7BA 4A7XA 2VA1A 3C1MA 4A7WA 3S6HA 2J0XA 3D41A 2J5VA 1OH9A 1E19A 1OHAA 3QUOA 1GSJA 3NWYA 3T7BA 3QVHA 3KZFA 3D2PA 4NDPB 3D40A 3S6KA 3EK5A 3ZZIA 4JZ7A 4JZ9A 4NDQB 3C20A 3EK6A 4NDOB 2BRIA 4NDRA 3D2MA 2JI5A 2BUFA 4NDQA 4NDOA 2HMFA 4KZTA 2WE4A 2CDQA 2BNEA 2RD5A 3C1NA 4F6TB 1GS5A 3WWNA 3WWMA 4NDPA 2BRXA 3U6UA 2BNFA 3B8GA 2IJ9A 3AAWA 4I49A 3LKKA 2AKOA 3ZZFA 3S6GA 3QURA 2V4YA 3LL5A 4AXSA
chains in the Genus database with same CATH topology
2J4LA 3L76A 3QUNA 4AB7A 2J5TA 2WE5A 2AP9A 2JJ4A 4F6TA 3K52A 2A1FA 3K4YA 3ZZHA 2BNDA 2E9YA 1Z9DA 2J0WA 2W21A 3LL9A 2J4JA 2OGXB 2WXBA 2BTYA 2X2WA 3K4OA 4JZ8A 3QVFA 1YBDA 2OGXA 2V5HA 3ZZGA 2R98A 3AB2A 2J4KA 3AB4A 3TVIA 4NDRB 4USJA 4Q1TA 2BMUA 1OHBA 3K56A 2R8VA 4OLCA 2JJXA 3L86A 1B7BA 4A7XA 2VA1A 3C1MA 4A7WA 3S6HA 2J0XA 3D41A 2J5VA 1OH9A 1E19A 1OHAA 3QUOA 1GSJA 3NWYA 3T7BA 3QVHA 3KZFA 3D2PA 4NDPB 3D40A 3S6KA 3EK5A 3ZZIA 4JZ7A 4JZ9A 4NDQB 3C20A 3EK6A 4NDOB 2BRIA 4NDRA 3D2MA 2JI5A 2BUFA 4NDQA 4NDOA 2HMFA 4KZTA 2WE4A 2CDQA 2BNEA 2RD5A 3C1NA 4F6TB 1GS5A 3WWNA 3WWMA 4NDPA 2BRXA 3U6UA 2BNFA 3B8GA 2IJ9A 3AAWA 4I49A 3LKKA 2AKOA 3ZZFA 3S6GA 3QURA 2V4YA 3LL5A 4AXSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J4L A;  3L76 A;  3QUN A;  4AB7 A;  2J5T A;  2WE5 A;  2AP9 A;  2JJ4 A;  4F6T A;  3K52 A;  2A1F A;  3K4Y A;  3ZZH A;  2BND A;  2E9Y A;  1Z9D A;  2J0W A;  2W21 A;  3LL9 A;  2J4J A;  2OGX B;  2WXB A;  2BTY A;  2X2W A;  3K4O A;  4JZ8 A;  3QVF A;  1YBD A;  2OGX A;  2V5H A;  3ZZG A;  2R98 A;  3AB2 A;  2J4K A;  3AB4 A;  3TVI A;  4NDR B;  4USJ A;  4Q1T A;  2BMU A;  1OHB A;  3K56 A;  2R8V A;  4OLC A;  2JJX A;  3L86 A;  1B7B A;  4A7X A;  2VA1 A;  3C1M A;  4A7W A;  3S6H A;  2J0X A;  3D41 A;  2J5V A;  1OH9 A;  1E19 A;  1OHA A;  3QUO A;  1GSJ A;  3NWY A;  3T7B A;  3QVH A;  3KZF A;  3D2P A;  4NDP B;  3D40 A;  3S6K A;  3EK5 A;  3ZZI A;  4JZ7 A;  4JZ9 A;  4NDQ B;  3C20 A;  3EK6 A;  4NDO B;  2BRI A;  4NDR A;  3D2M A;  2JI5 A;  2BUF A;  4NDQ A;  4NDO A;  2HMF A;  4KZT A;  2WE4 A;  2CDQ A;  2BNE A;  2RD5 A;  3C1N A;  4F6T B;  1GS5 A;  3WWN A;  3WWM A;  4NDP A;  2BRX A;  3U6U A;  2BNF A;  3B8G A;  2IJ9 A;  3AAW A;  4I49 A;  3LKK A;  2AKO A;  3ZZF A;  3S6G A;  3QUR A;  2V4Y A;  3LL5 A;  4AXS A; 
#chains in the Genus database with same CATH topology
 2J4L A;  3L76 A;  3QUN A;  4AB7 A;  2J5T A;  2WE5 A;  2AP9 A;  2JJ4 A;  4F6T A;  3K52 A;  2A1F A;  3K4Y A;  3ZZH A;  2BND A;  2E9Y A;  1Z9D A;  2J0W A;  2W21 A;  3LL9 A;  2J4J A;  2OGX B;  2WXB A;  2BTY A;  2X2W A;  3K4O A;  4JZ8 A;  3QVF A;  1YBD A;  2OGX A;  2V5H A;  3ZZG A;  2R98 A;  3AB2 A;  2J4K A;  3AB4 A;  3TVI A;  4NDR B;  4USJ A;  4Q1T A;  2BMU A;  1OHB A;  3K56 A;  2R8V A;  4OLC A;  2JJX A;  3L86 A;  1B7B A;  4A7X A;  2VA1 A;  3C1M A;  4A7W A;  3S6H A;  2J0X A;  3D41 A;  2J5V A;  1OH9 A;  1E19 A;  1OHA A;  3QUO A;  1GSJ A;  3NWY A;  3T7B A;  3QVH A;  3KZF A;  3D2P A;  4NDP B;  3D40 A;  3S6K A;  3EK5 A;  3ZZI A;  4JZ7 A;  4JZ9 A;  4NDQ B;  3C20 A;  3EK6 A;  4NDO B;  2BRI A;  4NDR A;  3D2M A;  2JI5 A;  2BUF A;  4NDQ A;  4NDO A;  2HMF A;  4KZT A;  2WE4 A;  2CDQ A;  2BNE A;  2RD5 A;  3C1N A;  4F6T B;  1GS5 A;  3WWN A;  3WWM A;  4NDP A;  2BRX A;  3U6U A;  2BNF A;  3B8G A;  2IJ9 A;  3AAW A;  4I49 A;  3LKK A;  2AKO A;  3ZZF A;  3S6G A;  3QUR A;  2V4Y A;  3LL5 A;  4AXS A; 
#chains in the Genus database with same CATH homology
 2J4L A;  3L76 A;  3QUN A;  4AB7 A;  2J5T A;  2WE5 A;  2AP9 A;  2JJ4 A;  4F6T A;  3K52 A;  2A1F A;  3K4Y A;  3ZZH A;  2BND A;  2E9Y A;  1Z9D A;  2J0W A;  2W21 A;  3LL9 A;  2J4J A;  2OGX B;  2WXB A;  2BTY A;  2X2W A;  3K4O A;  4JZ8 A;  3QVF A;  1YBD A;  2OGX A;  2V5H A;  3ZZG A;  2R98 A;  3AB2 A;  2J4K A;  3AB4 A;  3TVI A;  4NDR B;  4USJ A;  4Q1T A;  2BMU A;  1OHB A;  3K56 A;  2R8V A;  4OLC A;  2JJX A;  3L86 A;  1B7B A;  4A7X A;  2VA1 A;  3C1M A;  4A7W A;  3S6H A;  2J0X A;  3D41 A;  2J5V A;  1OH9 A;  1E19 A;  1OHA A;  3QUO A;  1GSJ A;  3NWY A;  3T7B A;  3QVH A;  3KZF A;  3D2P A;  4NDP B;  3D40 A;  3S6K A;  3EK5 A;  3ZZI A;  4JZ7 A;  4JZ9 A;  4NDQ B;  3C20 A;  3EK6 A;  4NDO B;  2BRI A;  4NDR A;  3D2M A;  2JI5 A;  2BUF A;  4NDQ A;  4NDO A;  2HMF A;  4KZT A;  2WE4 A;  2CDQ A;  2BNE A;  2RD5 A;  3C1N A;  4F6T B;  1GS5 A;  3WWN A;  3WWM A;  4NDP A;  2BRX A;  3U6U A;  2BNF A;  3B8G A;  2IJ9 A;  3AAW A;  4I49 A;  3LKK A;  2AKO A;  3ZZF A;  3S6G A;  3QUR A;  2V4Y A;  3LL5 A;  4AXS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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