3K4OA

Crystal structure of isopentenyl phosphate kinase from methanocaldococcus jannaschii
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4oA00
3D40A 2A1FA 4KZTA 2JJXA 3NWYA 2W21A 2BMUA 2R8VA 3AB4A 4JZ8A 1YBDA 3ZZGA 2V4YA 2E9YA 3ZZFA 3S6KA 2AP9A 3B8GA 4AXSA 3QVHA 2OGXA 2JJ4A 1GS5A 3K4OA 2X2WA 4Q1TA 3U6UA 2J5TA 3LL5A 4NDQB 2HMFA 3L76A 3D2MA 4A7WA 1GSJA 1Z9DA 4NDPA 2WE4A 3ZZHA 3AB2A 3EK5A 1OHBA 3K56A 2IJ9A 2WXBA 3C1NA 3L86A 2CDQA 2RD5A 3K4YA 2J4LA 4NDOA 4NDOB 4NDRA 4NDRB 3QVFA 3TVIA 4A7XA 2BNEA 2OGXB 2JI5A 2J4JA 3EK6A 3D41A 3T7BA 3QURA 3K52A 3LL9A 3WWNA 3WWMA 2BNDA 4NDPB 2J5VA 3AAWA 1B7BA 2BTYA 2VA1A 2BNFA 4I49A 1E19A 3D2PA 1OH9A 4USJA 4JZ9A 2J0WA 3S6GA 3C1MA 3S6HA 2R98A 4AB7A 3LKKA 3QUOA 4NDQA 3ZZIA 3KZFA 1OHAA 2BRIA 2V5HA 4F6TA 4F6TB 3QUNA 4OLCA 2WE5A 2AKOA 2J4KA 4JZ7A 2BRXA 3C20A 2BUFA 2J0XA
chains in the Genus database with same CATH superfamily
3D40A 2A1FA 4KZTA 2JJXA 3NWYA 2W21A 2BMUA 2R8VA 3AB4A 4JZ8A 1YBDA 3ZZGA 2V4YA 2E9YA 3ZZFA 3S6KA 2AP9A 3B8GA 4AXSA 3QVHA 2OGXA 2JJ4A 1GS5A 3K4OA 2X2WA 4Q1TA 3U6UA 2J5TA 3LL5A 4NDQB 2HMFA 3L76A 3D2MA 4A7WA 1GSJA 1Z9DA 4NDPA 2WE4A 3ZZHA 3AB2A 3EK5A 1OHBA 3K56A 2IJ9A 2WXBA 3C1NA 3L86A 2CDQA 2RD5A 3K4YA 2J4LA 4NDOA 4NDOB 4NDRA 4NDRB 3QVFA 3TVIA 4A7XA 2BNEA 2OGXB 2JI5A 2J4JA 3EK6A 3D41A 3T7BA 3QURA 3K52A 3LL9A 3WWNA 3WWMA 2BNDA 4NDPB 2J5VA 3AAWA 1B7BA 2BTYA 2VA1A 2BNFA 4I49A 1E19A 3D2PA 1OH9A 4USJA 4JZ9A 2J0WA 3S6GA 3C1MA 3S6HA 2R98A 4AB7A 3LKKA 3QUOA 4NDQA 3ZZIA 3KZFA 1OHAA 2BRIA 2V5HA 4F6TA 4F6TB 3QUNA 4OLCA 2WE5A 2AKOA 2J4KA 4JZ7A 2BRXA 3C20A 2BUFA 2J0XA
chains in the Genus database with same CATH topology
3D40A 2A1FA 4KZTA 2JJXA 3NWYA 2W21A 2BMUA 2R8VA 3AB4A 4JZ8A 1YBDA 3ZZGA 2V4YA 2E9YA 3ZZFA 3S6KA 2AP9A 3B8GA 4AXSA 3QVHA 2OGXA 2JJ4A 1GS5A 3K4OA 2X2WA 4Q1TA 3U6UA 2J5TA 3LL5A 4NDQB 2HMFA 3L76A 3D2MA 4A7WA 1GSJA 1Z9DA 4NDPA 2WE4A 3ZZHA 3AB2A 3EK5A 1OHBA 3K56A 2IJ9A 2WXBA 3C1NA 3L86A 2CDQA 2RD5A 3K4YA 2J4LA 4NDOA 4NDOB 4NDRA 4NDRB 3QVFA 3TVIA 4A7XA 2BNEA 2OGXB 2JI5A 2J4JA 3EK6A 3D41A 3T7BA 3QURA 3K52A 3LL9A 3WWNA 3WWMA 2BNDA 4NDPB 2J5VA 3AAWA 1B7BA 2BTYA 2VA1A 2BNFA 4I49A 1E19A 3D2PA 1OH9A 4USJA 4JZ9A 2J0WA 3S6GA 3C1MA 3S6HA 2R98A 4AB7A 3LKKA 3QUOA 4NDQA 3ZZIA 3KZFA 1OHAA 2BRIA 2V5HA 4F6TA 4F6TB 3QUNA 4OLCA 2WE5A 2AKOA 2J4KA 4JZ7A 2BRXA 3C20A 2BUFA 2J0XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D40 A;  2A1F A;  4KZT A;  2JJX A;  3NWY A;  2W21 A;  2BMU A;  2R8V A;  3AB4 A;  4JZ8 A;  1YBD A;  3ZZG A;  2V4Y A;  2E9Y A;  3ZZF A;  3S6K A;  2AP9 A;  3B8G A;  4AXS A;  3QVH A;  2OGX A;  2JJ4 A;  1GS5 A;  3K4O A;  2X2W A;  4Q1T A;  3U6U A;  2J5T A;  3LL5 A;  4NDQ B;  2HMF A;  3L76 A;  3D2M A;  4A7W A;  1GSJ A;  1Z9D A;  4NDP A;  2WE4 A;  3ZZH A;  3AB2 A;  3EK5 A;  1OHB A;  3K56 A;  2IJ9 A;  2WXB A;  3C1N A;  3L86 A;  2CDQ A;  2RD5 A;  3K4Y A;  2J4L A;  4NDO A;  4NDO B;  4NDR A;  4NDR B;  3QVF A;  3TVI A;  4A7X A;  2BNE A;  2OGX B;  2JI5 A;  2J4J A;  3EK6 A;  3D41 A;  3T7B A;  3QUR A;  3K52 A;  3LL9 A;  3WWN A;  3WWM A;  2BND A;  4NDP B;  2J5V A;  3AAW A;  1B7B A;  2BTY A;  2VA1 A;  2BNF A;  4I49 A;  1E19 A;  3D2P A;  1OH9 A;  4USJ A;  4JZ9 A;  2J0W A;  3S6G A;  3C1M A;  3S6H A;  2R98 A;  4AB7 A;  3LKK A;  3QUO A;  4NDQ A;  3ZZI A;  3KZF A;  1OHA A;  2BRI A;  2V5H A;  4F6T A;  4F6T B;  3QUN A;  4OLC A;  2WE5 A;  2AKO A;  2J4K A;  4JZ7 A;  2BRX A;  3C20 A;  2BUF A;  2J0X A; 
#chains in the Genus database with same CATH topology
 3D40 A;  2A1F A;  4KZT A;  2JJX A;  3NWY A;  2W21 A;  2BMU A;  2R8V A;  3AB4 A;  4JZ8 A;  1YBD A;  3ZZG A;  2V4Y A;  2E9Y A;  3ZZF A;  3S6K A;  2AP9 A;  3B8G A;  4AXS A;  3QVH A;  2OGX A;  2JJ4 A;  1GS5 A;  3K4O A;  2X2W A;  4Q1T A;  3U6U A;  2J5T A;  3LL5 A;  4NDQ B;  2HMF A;  3L76 A;  3D2M A;  4A7W A;  1GSJ A;  1Z9D A;  4NDP A;  2WE4 A;  3ZZH A;  3AB2 A;  3EK5 A;  1OHB A;  3K56 A;  2IJ9 A;  2WXB A;  3C1N A;  3L86 A;  2CDQ A;  2RD5 A;  3K4Y A;  2J4L A;  4NDO A;  4NDO B;  4NDR A;  4NDR B;  3QVF A;  3TVI A;  4A7X A;  2BNE A;  2OGX B;  2JI5 A;  2J4J A;  3EK6 A;  3D41 A;  3T7B A;  3QUR A;  3K52 A;  3LL9 A;  3WWN A;  3WWM A;  2BND A;  4NDP B;  2J5V A;  3AAW A;  1B7B A;  2BTY A;  2VA1 A;  2BNF A;  4I49 A;  1E19 A;  3D2P A;  1OH9 A;  4USJ A;  4JZ9 A;  2J0W A;  3S6G A;  3C1M A;  3S6H A;  2R98 A;  4AB7 A;  3LKK A;  3QUO A;  4NDQ A;  3ZZI A;  3KZF A;  1OHA A;  2BRI A;  2V5H A;  4F6T A;  4F6T B;  3QUN A;  4OLC A;  2WE5 A;  2AKO A;  2J4K A;  4JZ7 A;  2BRX A;  3C20 A;  2BUF A;  2J0X A; 
#chains in the Genus database with same CATH homology
 3D40 A;  2A1F A;  4KZT A;  2JJX A;  3NWY A;  2W21 A;  2BMU A;  2R8V A;  3AB4 A;  4JZ8 A;  1YBD A;  3ZZG A;  2V4Y A;  2E9Y A;  3ZZF A;  3S6K A;  2AP9 A;  3B8G A;  4AXS A;  3QVH A;  2OGX A;  2JJ4 A;  1GS5 A;  3K4O A;  2X2W A;  4Q1T A;  3U6U A;  2J5T A;  3LL5 A;  4NDQ B;  2HMF A;  3L76 A;  3D2M A;  4A7W A;  1GSJ A;  1Z9D A;  4NDP A;  2WE4 A;  3ZZH A;  3AB2 A;  3EK5 A;  1OHB A;  3K56 A;  2IJ9 A;  2WXB A;  3C1N A;  3L86 A;  2CDQ A;  2RD5 A;  3K4Y A;  2J4L A;  4NDO A;  4NDO B;  4NDR A;  4NDR B;  3QVF A;  3TVI A;  4A7X A;  2BNE A;  2OGX B;  2JI5 A;  2J4J A;  3EK6 A;  3D41 A;  3T7B A;  3QUR A;  3K52 A;  3LL9 A;  3WWN A;  3WWM A;  2BND A;  4NDP B;  2J5V A;  3AAW A;  1B7B A;  2BTY A;  2VA1 A;  2BNF A;  4I49 A;  1E19 A;  3D2P A;  1OH9 A;  4USJ A;  4JZ9 A;  2J0W A;  3S6G A;  3C1M A;  3S6H A;  2R98 A;  4AB7 A;  3LKK A;  3QUO A;  4NDQ A;  3ZZI A;  3KZF A;  1OHA A;  2BRI A;  2V5H A;  4F6T A;  4F6T B;  3QUN A;  4OLC A;  2WE5 A;  2AKO A;  2J4K A;  4JZ7 A;  2BRX A;  3C20 A;  2BUF A;  2J0X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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