3K4OA

Crystal structure of isopentenyl phosphate kinase from methanocaldococcus jannaschii
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
260
structure length
260
Chain Sequence
b'MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 83
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k4oA00
4NDRB 4NDQA 3B8GA 2WXBA 3C1MA 4USJA 2J4LA 3S6KA 4I49A 3K4YA 3LKKA 2W21A 3ZZFA 4NDRA 1B7BA 2VA1A 2J5VA 3NWYA 2RD5A 4A7WA 2BNFA 3LL9A 3LL5A 2V4YA 3K56A 2OGXA 2BMUA 2R98A 4Q1TA 2JI5A 3EK5A 3C1NA 3AB2A 2BTYA 2HMFA 2AKOA 1E19A 2OGXB 3S6HA 3U6UA 4F6TA 4NDPA 2JJ4A 4AXSA 3QVHA 3T7BA 3TVIA 3ZZHA 2A1FA 1Z9DA 2IJ9A 1OHBA 3D2PA 4JZ8A 2J4JA 4F6TB 4NDPB 3D40A 3QUNA 3S6GA 3ZZGA 3KZFA 4KZTA 4AB7A 2R8VA 3WWMA 4JZ9A 3L76A 3EK6A 3WWNA 2BRXA 2J4KA 3K4OA 1YBDA 3QVFA 3AAWA 3C20A 1OH9A 3QURA 2AP9A 2BRIA 2BNDA 4NDOB 2J0XA 4JZ7A 2BUFA 3QUOA 4A7XA 2WE5A 2CDQA 3D2MA 3K52A 2WE4A 3ZZIA 2E9YA 4NDOA 1GSJA 2X2WA 2J0WA 2JJXA 4OLCA 4NDQB 3L86A 3AB4A 1OHAA 1GS5A 2BNEA 2V5HA 3D41A 2J5TA
chains in the Genus database with same CATH superfamily
4NDRB 4NDQA 3B8GA 2WXBA 3C1MA 4USJA 2J4LA 3S6KA 4I49A 3K4YA 3LKKA 2W21A 3ZZFA 4NDRA 1B7BA 2VA1A 2J5VA 3NWYA 2RD5A 4A7WA 2BNFA 3LL9A 3LL5A 2V4YA 3K56A 2OGXA 2BMUA 2R98A 4Q1TA 2JI5A 3EK5A 3C1NA 3AB2A 2BTYA 2HMFA 2AKOA 1E19A 2OGXB 3S6HA 3U6UA 4F6TA 4NDPA 2JJ4A 4AXSA 3QVHA 3T7BA 3TVIA 3ZZHA 2A1FA 1Z9DA 2IJ9A 1OHBA 3D2PA 4JZ8A 2J4JA 4F6TB 4NDPB 3D40A 3QUNA 3S6GA 3ZZGA 3KZFA 4KZTA 4AB7A 2R8VA 3WWMA 4JZ9A 3L76A 3EK6A 3WWNA 2BRXA 2J4KA 3K4OA 1YBDA 3QVFA 3AAWA 3C20A 1OH9A 3QURA 2AP9A 2BRIA 2BNDA 4NDOB 2J0XA 4JZ7A 2BUFA 3QUOA 4A7XA 2WE5A 2CDQA 3D2MA 3K52A 2WE4A 3ZZIA 2E9YA 4NDOA 1GSJA 2X2WA 2J0WA 2JJXA 4OLCA 4NDQB 3L86A 3AB4A 1OHAA 1GS5A 2BNEA 2V5HA 3D41A 2J5TA
chains in the Genus database with same CATH topology
4NDRB 4NDQA 3B8GA 2WXBA 3C1MA 4USJA 2J4LA 3S6KA 4I49A 3K4YA 3LKKA 2W21A 3ZZFA 4NDRA 1B7BA 2VA1A 2J5VA 3NWYA 2RD5A 4A7WA 2BNFA 3LL9A 3LL5A 2V4YA 3K56A 2OGXA 2BMUA 2R98A 4Q1TA 2JI5A 3EK5A 3C1NA 3AB2A 2BTYA 2HMFA 2AKOA 1E19A 2OGXB 3S6HA 3U6UA 4F6TA 4NDPA 2JJ4A 4AXSA 3QVHA 3T7BA 3TVIA 3ZZHA 2A1FA 1Z9DA 2IJ9A 1OHBA 3D2PA 4JZ8A 2J4JA 4F6TB 4NDPB 3D40A 3QUNA 3S6GA 3ZZGA 3KZFA 4KZTA 4AB7A 2R8VA 3WWMA 4JZ9A 3L76A 3EK6A 3WWNA 2BRXA 2J4KA 3K4OA 1YBDA 3QVFA 3AAWA 3C20A 1OH9A 3QURA 2AP9A 2BRIA 2BNDA 4NDOB 2J0XA 4JZ7A 2BUFA 3QUOA 4A7XA 2WE5A 2CDQA 3D2MA 3K52A 2WE4A 3ZZIA 2E9YA 4NDOA 1GSJA 2X2WA 2J0WA 2JJXA 4OLCA 4NDQB 3L86A 3AB4A 1OHAA 1GS5A 2BNEA 2V5HA 3D41A 2J5TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDR B;  4NDQ A;  3B8G A;  2WXB A;  3C1M A;  4USJ A;  2J4L A;  3S6K A;  4I49 A;  3K4Y A;  3LKK A;  2W21 A;  3ZZF A;  4NDR A;  1B7B A;  2VA1 A;  2J5V A;  3NWY A;  2RD5 A;  4A7W A;  2BNF A;  3LL9 A;  3LL5 A;  2V4Y A;  3K56 A;  2OGX A;  2BMU A;  2R98 A;  4Q1T A;  2JI5 A;  3EK5 A;  3C1N A;  3AB2 A;  2BTY A;  2HMF A;  2AKO A;  1E19 A;  2OGX B;  3S6H A;  3U6U A;  4F6T A;  4NDP A;  2JJ4 A;  4AXS A;  3QVH A;  3T7B A;  3TVI A;  3ZZH A;  2A1F A;  1Z9D A;  2IJ9 A;  1OHB A;  3D2P A;  4JZ8 A;  2J4J A;  4F6T B;  4NDP B;  3D40 A;  3QUN A;  3S6G A;  3ZZG A;  3KZF A;  4KZT A;  4AB7 A;  2R8V A;  3WWM A;  4JZ9 A;  3L76 A;  3EK6 A;  3WWN A;  2BRX A;  2J4K A;  3K4O A;  1YBD A;  3QVF A;  3AAW A;  3C20 A;  1OH9 A;  3QUR A;  2AP9 A;  2BRI A;  2BND A;  4NDO B;  2J0X A;  4JZ7 A;  2BUF A;  3QUO A;  4A7X A;  2WE5 A;  2CDQ A;  3D2M A;  3K52 A;  2WE4 A;  3ZZI A;  2E9Y A;  4NDO A;  1GSJ A;  2X2W A;  2J0W A;  2JJX A;  4OLC A;  4NDQ B;  3L86 A;  3AB4 A;  1OHA A;  1GS5 A;  2BNE A;  2V5H A;  3D41 A;  2J5T A; 
#chains in the Genus database with same CATH topology
 4NDR B;  4NDQ A;  3B8G A;  2WXB A;  3C1M A;  4USJ A;  2J4L A;  3S6K A;  4I49 A;  3K4Y A;  3LKK A;  2W21 A;  3ZZF A;  4NDR A;  1B7B A;  2VA1 A;  2J5V A;  3NWY A;  2RD5 A;  4A7W A;  2BNF A;  3LL9 A;  3LL5 A;  2V4Y A;  3K56 A;  2OGX A;  2BMU A;  2R98 A;  4Q1T A;  2JI5 A;  3EK5 A;  3C1N A;  3AB2 A;  2BTY A;  2HMF A;  2AKO A;  1E19 A;  2OGX B;  3S6H A;  3U6U A;  4F6T A;  4NDP A;  2JJ4 A;  4AXS A;  3QVH A;  3T7B A;  3TVI A;  3ZZH A;  2A1F A;  1Z9D A;  2IJ9 A;  1OHB A;  3D2P A;  4JZ8 A;  2J4J A;  4F6T B;  4NDP B;  3D40 A;  3QUN A;  3S6G A;  3ZZG A;  3KZF A;  4KZT A;  4AB7 A;  2R8V A;  3WWM A;  4JZ9 A;  3L76 A;  3EK6 A;  3WWN A;  2BRX A;  2J4K A;  3K4O A;  1YBD A;  3QVF A;  3AAW A;  3C20 A;  1OH9 A;  3QUR A;  2AP9 A;  2BRI A;  2BND A;  4NDO B;  2J0X A;  4JZ7 A;  2BUF A;  3QUO A;  4A7X A;  2WE5 A;  2CDQ A;  3D2M A;  3K52 A;  2WE4 A;  3ZZI A;  2E9Y A;  4NDO A;  1GSJ A;  2X2W A;  2J0W A;  2JJX A;  4OLC A;  4NDQ B;  3L86 A;  3AB4 A;  1OHA A;  1GS5 A;  2BNE A;  2V5H A;  3D41 A;  2J5T A; 
#chains in the Genus database with same CATH homology
 4NDR B;  4NDQ A;  3B8G A;  2WXB A;  3C1M A;  4USJ A;  2J4L A;  3S6K A;  4I49 A;  3K4Y A;  3LKK A;  2W21 A;  3ZZF A;  4NDR A;  1B7B A;  2VA1 A;  2J5V A;  3NWY A;  2RD5 A;  4A7W A;  2BNF A;  3LL9 A;  3LL5 A;  2V4Y A;  3K56 A;  2OGX A;  2BMU A;  2R98 A;  4Q1T A;  2JI5 A;  3EK5 A;  3C1N A;  3AB2 A;  2BTY A;  2HMF A;  2AKO A;  1E19 A;  2OGX B;  3S6H A;  3U6U A;  4F6T A;  4NDP A;  2JJ4 A;  4AXS A;  3QVH A;  3T7B A;  3TVI A;  3ZZH A;  2A1F A;  1Z9D A;  2IJ9 A;  1OHB A;  3D2P A;  4JZ8 A;  2J4J A;  4F6T B;  4NDP B;  3D40 A;  3QUN A;  3S6G A;  3ZZG A;  3KZF A;  4KZT A;  4AB7 A;  2R8V A;  3WWM A;  4JZ9 A;  3L76 A;  3EK6 A;  3WWN A;  2BRX A;  2J4K A;  3K4O A;  1YBD A;  3QVF A;  3AAW A;  3C20 A;  1OH9 A;  3QUR A;  2AP9 A;  2BRI A;  2BND A;  4NDO B;  2J0X A;  4JZ7 A;  2BUF A;  3QUO A;  4A7X A;  2WE5 A;  2CDQ A;  3D2M A;  3K52 A;  2WE4 A;  3ZZI A;  2E9Y A;  4NDO A;  1GSJ A;  2X2W A;  2J0W A;  2JJX A;  4OLC A;  4NDQ B;  3L86 A;  3AB4 A;  1OHA A;  1GS5 A;  2BNE A;  2V5H A;  3D41 A;  2J5T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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