3U6UA

Crystal structure of the putative acetylglutamate kinase from thermus thermophilus
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
269
structure length
248
Chain Sequence
MIVVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLAPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSGEGTVVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of first dimeric archaeal N-acetyl glutamate kinase reveals an intermediate conformation of the enzyme in the catalytic cycle
rcsb
source organism Thermus thermophilus
molecule tags Transferase
molecule keywords Putative acetylglutamate kinase
total genus 89
structure length 248
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2011-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3u6uA00
4A7WA 1GS5A 4AB7A 2BUFA 1E19A 4A7XA 2W21A 4NDOA 2HMFA 2BTYA 1GSJA 2J4JA 1Z9DA 2OGXA 3D41A 2BNEA 3K4OA 3AB2A 4F6TB 2JJ4A 3LKKA 3L86A 4I49A 3K56A 4NDOB 3S6GA 2R98A 2WXBA 2J5TA 3AAWA 2CDQA 2OGXB 3TVIA 2AKOA 2WE4A 3QURA 4F6TA 1OH9A 2J4LA 3AB4A 4OLCA 3LL9A 3L76A 2VA1A 2BNDA 3D2MA 1YBDA 2J0WA 3ZZHA 2JJXA 4NDPB 4AXSA 1B7BA 2IJ9A 3C20A 2J0XA 2V4YA 3D2PA 3ZZFA 3ZZIA 1OHBA 2V5HA 4JZ9A 4JZ7A 4KZTA 2R8VA 3WWNA 2J5VA 3EK5A 3ZZGA 2BMUA 4JZ8A 3U6UA 3K52A 3WWMA 3NWYA 4NDQA 2E9YA 3S6KA 4NDRB 3C1NA 4USJA 2JI5A 3B8GA 2BRXA 2RD5A 3T7BA 3LL5A 3S6HA 2J4KA 4NDQB 2WE5A 3C1MA 1OHAA 4NDRA 2BNFA 3EK6A 3QUNA 2X2WA 3K4YA 3QUOA 3KZFA 3D40A 2A1FA 4Q1TA 2BRIA 3QVFA 4NDPA 2AP9A 3QVHA
chains in the Genus database with same CATH superfamily
4A7WA 1GS5A 4AB7A 2BUFA 1E19A 4A7XA 2W21A 4NDOA 2HMFA 2BTYA 1GSJA 2J4JA 1Z9DA 2OGXA 3D41A 2BNEA 3K4OA 3AB2A 4F6TB 2JJ4A 3LKKA 3L86A 4I49A 3K56A 4NDOB 3S6GA 2R98A 2WXBA 2J5TA 3AAWA 2CDQA 2OGXB 3TVIA 2AKOA 2WE4A 3QURA 4F6TA 1OH9A 2J4LA 3AB4A 4OLCA 3LL9A 3L76A 2VA1A 2BNDA 3D2MA 1YBDA 2J0WA 3ZZHA 2JJXA 4NDPB 4AXSA 1B7BA 2IJ9A 3C20A 2J0XA 2V4YA 3D2PA 3ZZFA 3ZZIA 1OHBA 2V5HA 4JZ9A 4JZ7A 4KZTA 2R8VA 3WWNA 2J5VA 3EK5A 3ZZGA 2BMUA 4JZ8A 3U6UA 3K52A 3WWMA 3NWYA 4NDQA 2E9YA 3S6KA 4NDRB 3C1NA 4USJA 2JI5A 3B8GA 2BRXA 2RD5A 3T7BA 3LL5A 3S6HA 2J4KA 4NDQB 2WE5A 3C1MA 1OHAA 4NDRA 2BNFA 3EK6A 3QUNA 2X2WA 3K4YA 3QUOA 3KZFA 3D40A 2A1FA 4Q1TA 2BRIA 3QVFA 4NDPA 2AP9A 3QVHA
chains in the Genus database with same CATH topology
4A7WA 1GS5A 4AB7A 2BUFA 1E19A 4A7XA 2W21A 4NDOA 2HMFA 2BTYA 1GSJA 2J4JA 1Z9DA 2OGXA 3D41A 2BNEA 3K4OA 3AB2A 4F6TB 2JJ4A 3LKKA 3L86A 4I49A 3K56A 4NDOB 3S6GA 2R98A 2WXBA 2J5TA 3AAWA 2CDQA 2OGXB 3TVIA 2AKOA 2WE4A 3QURA 4F6TA 1OH9A 2J4LA 3AB4A 4OLCA 3LL9A 3L76A 2VA1A 2BNDA 3D2MA 1YBDA 2J0WA 3ZZHA 2JJXA 4NDPB 4AXSA 1B7BA 2IJ9A 3C20A 2J0XA 2V4YA 3D2PA 3ZZFA 3ZZIA 1OHBA 2V5HA 4JZ9A 4JZ7A 4KZTA 2R8VA 3WWNA 2J5VA 3EK5A 3ZZGA 2BMUA 4JZ8A 3U6UA 3K52A 3WWMA 3NWYA 4NDQA 2E9YA 3S6KA 4NDRB 3C1NA 4USJA 2JI5A 3B8GA 2BRXA 2RD5A 3T7BA 3LL5A 3S6HA 2J4KA 4NDQB 2WE5A 3C1MA 1OHAA 4NDRA 2BNFA 3EK6A 3QUNA 2X2WA 3K4YA 3QUOA 3KZFA 3D40A 2A1FA 4Q1TA 2BRIA 3QVFA 4NDPA 2AP9A 3QVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A7W A;  1GS5 A;  4AB7 A;  2BUF A;  1E19 A;  4A7X A;  2W21 A;  4NDO A;  2HMF A;  2BTY A;  1GSJ A;  2J4J A;  1Z9D A;  2OGX A;  3D41 A;  2BNE A;  3K4O A;  3AB2 A;  4F6T B;  2JJ4 A;  3LKK A;  3L86 A;  4I49 A;  3K56 A;  4NDO B;  3S6G A;  2R98 A;  2WXB A;  2J5T A;  3AAW A;  2CDQ A;  2OGX B;  3TVI A;  2AKO A;  2WE4 A;  3QUR A;  4F6T A;  1OH9 A;  2J4L A;  3AB4 A;  4OLC A;  3LL9 A;  3L76 A;  2VA1 A;  2BND A;  3D2M A;  1YBD A;  2J0W A;  3ZZH A;  2JJX A;  4NDP B;  4AXS A;  1B7B A;  2IJ9 A;  3C20 A;  2J0X A;  2V4Y A;  3D2P A;  3ZZF A;  3ZZI A;  1OHB A;  2V5H A;  4JZ9 A;  4JZ7 A;  4KZT A;  2R8V A;  3WWN A;  2J5V A;  3EK5 A;  3ZZG A;  2BMU A;  4JZ8 A;  3U6U A;  3K52 A;  3WWM A;  3NWY A;  4NDQ A;  2E9Y A;  3S6K A;  4NDR B;  3C1N A;  4USJ A;  2JI5 A;  3B8G A;  2BRX A;  2RD5 A;  3T7B A;  3LL5 A;  3S6H A;  2J4K A;  4NDQ B;  2WE5 A;  3C1M A;  1OHA A;  4NDR A;  2BNF A;  3EK6 A;  3QUN A;  2X2W A;  3K4Y A;  3QUO A;  3KZF A;  3D40 A;  2A1F A;  4Q1T A;  2BRI A;  3QVF A;  4NDP A;  2AP9 A;  3QVH A; 
#chains in the Genus database with same CATH topology
 4A7W A;  1GS5 A;  4AB7 A;  2BUF A;  1E19 A;  4A7X A;  2W21 A;  4NDO A;  2HMF A;  2BTY A;  1GSJ A;  2J4J A;  1Z9D A;  2OGX A;  3D41 A;  2BNE A;  3K4O A;  3AB2 A;  4F6T B;  2JJ4 A;  3LKK A;  3L86 A;  4I49 A;  3K56 A;  4NDO B;  3S6G A;  2R98 A;  2WXB A;  2J5T A;  3AAW A;  2CDQ A;  2OGX B;  3TVI A;  2AKO A;  2WE4 A;  3QUR A;  4F6T A;  1OH9 A;  2J4L A;  3AB4 A;  4OLC A;  3LL9 A;  3L76 A;  2VA1 A;  2BND A;  3D2M A;  1YBD A;  2J0W A;  3ZZH A;  2JJX A;  4NDP B;  4AXS A;  1B7B A;  2IJ9 A;  3C20 A;  2J0X A;  2V4Y A;  3D2P A;  3ZZF A;  3ZZI A;  1OHB A;  2V5H A;  4JZ9 A;  4JZ7 A;  4KZT A;  2R8V A;  3WWN A;  2J5V A;  3EK5 A;  3ZZG A;  2BMU A;  4JZ8 A;  3U6U A;  3K52 A;  3WWM A;  3NWY A;  4NDQ A;  2E9Y A;  3S6K A;  4NDR B;  3C1N A;  4USJ A;  2JI5 A;  3B8G A;  2BRX A;  2RD5 A;  3T7B A;  3LL5 A;  3S6H A;  2J4K A;  4NDQ B;  2WE5 A;  3C1M A;  1OHA A;  4NDR A;  2BNF A;  3EK6 A;  3QUN A;  2X2W A;  3K4Y A;  3QUO A;  3KZF A;  3D40 A;  2A1F A;  4Q1T A;  2BRI A;  3QVF A;  4NDP A;  2AP9 A;  3QVH A; 
#chains in the Genus database with same CATH homology
 4A7W A;  1GS5 A;  4AB7 A;  2BUF A;  1E19 A;  4A7X A;  2W21 A;  4NDO A;  2HMF A;  2BTY A;  1GSJ A;  2J4J A;  1Z9D A;  2OGX A;  3D41 A;  2BNE A;  3K4O A;  3AB2 A;  4F6T B;  2JJ4 A;  3LKK A;  3L86 A;  4I49 A;  3K56 A;  4NDO B;  3S6G A;  2R98 A;  2WXB A;  2J5T A;  3AAW A;  2CDQ A;  2OGX B;  3TVI A;  2AKO A;  2WE4 A;  3QUR A;  4F6T A;  1OH9 A;  2J4L A;  3AB4 A;  4OLC A;  3LL9 A;  3L76 A;  2VA1 A;  2BND A;  3D2M A;  1YBD A;  2J0W A;  3ZZH A;  2JJX A;  4NDP B;  4AXS A;  1B7B A;  2IJ9 A;  3C20 A;  2J0X A;  2V4Y A;  3D2P A;  3ZZF A;  3ZZI A;  1OHB A;  2V5H A;  4JZ9 A;  4JZ7 A;  4KZT A;  2R8V A;  3WWN A;  2J5V A;  3EK5 A;  3ZZG A;  2BMU A;  4JZ8 A;  3U6U A;  3K52 A;  3WWM A;  3NWY A;  4NDQ A;  2E9Y A;  3S6K A;  4NDR B;  3C1N A;  4USJ A;  2JI5 A;  3B8G A;  2BRX A;  2RD5 A;  3T7B A;  3LL5 A;  3S6H A;  2J4K A;  4NDQ B;  2WE5 A;  3C1M A;  1OHA A;  4NDR A;  2BNF A;  3EK6 A;  3QUN A;  2X2W A;  3K4Y A;  3QUO A;  3KZF A;  3D40 A;  2A1F A;  4Q1T A;  2BRI A;  3QVF A;  4NDP A;  2AP9 A;  3QVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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