The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
76
|
sequence length |
258
|
structure length |
255
|
Chain Sequence |
b'AMNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of N-acetyl-L-glutamate kinase from Yersinia pestis
rcsb |
| molecule keywords |
Acetylglutamate kinase
|
| source organism |
Yersinia pestis
|
| molecule tags |
Transferase
|
| total genus |
76
|
| structure length |
255
|
| sequence length |
258
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.7.2.8: Acetylglutamate kinase. |
| pdb deposition date | 2011-07-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00696 | AA_kinase | Amino acid kinase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 3D2M A; 3K4Y A; 4NDQ B; 2JI5 A; 2RD5 A; 3TVI A; 1OHA A; 1YBD A; 2BTY A; 2BNF A; 2X2W A; 4I49 A; 2WE5 A; 3WWM A; 3D41 A; 3KZF A; 3QVH A; 2A1F A; 3ZZI A; 2R98 A; 2BNE A; 2BND A; 3S6H A; 2J0W A; 3EK5 A; 4NDO A; 4OLC A; 3WWN A; 3L86 A; 4NDQ A; 3NWY A; 2BMU A; 2WE4 A; 3QUO A; 2J0X A; 2CDQ A; 4A7X A; 2OGX B; 2AKO A; 4A7W A; 2J4J A; 1Z9D A; 3K4O A; 3ZZH A; 4NDP B; 4JZ7 A; 3EK6 A; 3K52 A; 3LL5 A; 3AB2 A; 2J5T A; 2JJ4 A; 3D2P A; 3C20 A; 2BUF A; 3LL9 A; 2OGX A; 4F6T B; 4NDP A; 2VA1 A; 3S6K A; 3U6U A; 2AP9 A; 1OHB A; 3QUR A; 4USJ A; 4KZT A; 1OH9 A; 3T7B A; 2HMF A; 2V4Y A; 3ZZG A; 2V5H A; 2BRX A; 3C1N A; 3LKK A; 4JZ9 A; 3ZZF A; 1B7B A; 2WXB A; 4NDR B; 2JJX A; 2IJ9 A; 4AXS A; 2J5V A; 3C1M A; 4F6T A; 3S6G A; 4JZ8 A; 3B8G A; 4Q1T A; 2J4L A; 2J4K A; 1GS5 A; 3AB4 A; 4AB7 A; 2W21 A; 2E9Y A; 3D40 A; 3AAW A; 4NDR A; 1E19 A; 2BRI A; 3QVF A; 3QUN A; 3L76 A; 2R8V A; 3K56 A; 4NDO B; 1GSJ A; #chains in the Genus database with same CATH topology 3D2M A; 3K4Y A; 4NDQ B; 2JI5 A; 2RD5 A; 3TVI A; 1OHA A; 1YBD A; 2BTY A; 2BNF A; 2X2W A; 4I49 A; 2WE5 A; 3WWM A; 3D41 A; 3KZF A; 3QVH A; 2A1F A; 3ZZI A; 2R98 A; 2BNE A; 2BND A; 3S6H A; 2J0W A; 3EK5 A; 4NDO A; 4OLC A; 3WWN A; 3L86 A; 4NDQ A; 3NWY A; 2BMU A; 2WE4 A; 3QUO A; 2J0X A; 2CDQ A; 4A7X A; 2OGX B; 2AKO A; 4A7W A; 2J4J A; 1Z9D A; 3K4O A; 3ZZH A; 4NDP B; 4JZ7 A; 3EK6 A; 3K52 A; 3LL5 A; 3AB2 A; 2J5T A; 2JJ4 A; 3D2P A; 3C20 A; 2BUF A; 3LL9 A; 2OGX A; 4F6T B; 4NDP A; 2VA1 A; 3S6K A; 3U6U A; 2AP9 A; 1OHB A; 3QUR A; 4USJ A; 4KZT A; 1OH9 A; 3T7B A; 2HMF A; 2V4Y A; 3ZZG A; 2V5H A; 2BRX A; 3C1N A; 3LKK A; 4JZ9 A; 3ZZF A; 1B7B A; 2WXB A; 4NDR B; 2JJX A; 2IJ9 A; 4AXS A; 2J5V A; 3C1M A; 4F6T A; 3S6G A; 4JZ8 A; 3B8G A; 4Q1T A; 2J4L A; 2J4K A; 1GS5 A; 3AB4 A; 4AB7 A; 2W21 A; 2E9Y A; 3D40 A; 3AAW A; 4NDR A; 1E19 A; 2BRI A; 3QVF A; 3QUN A; 3L76 A; 2R8V A; 3K56 A; 4NDO B; 1GSJ A; #chains in the Genus database with same CATH homology 3D2M A; 3K4Y A; 4NDQ B; 2JI5 A; 2RD5 A; 3TVI A; 1OHA A; 1YBD A; 2BTY A; 2BNF A; 2X2W A; 4I49 A; 2WE5 A; 3WWM A; 3D41 A; 3KZF A; 3QVH A; 2A1F A; 3ZZI A; 2R98 A; 2BNE A; 2BND A; 3S6H A; 2J0W A; 3EK5 A; 4NDO A; 4OLC A; 3WWN A; 3L86 A; 4NDQ A; 3NWY A; 2BMU A; 2WE4 A; 3QUO A; 2J0X A; 2CDQ A; 4A7X A; 2OGX B; 2AKO A; 4A7W A; 2J4J A; 1Z9D A; 3K4O A; 3ZZH A; 4NDP B; 4JZ7 A; 3EK6 A; 3K52 A; 3LL5 A; 3AB2 A; 2J5T A; 2JJ4 A; 3D2P A; 3C20 A; 2BUF A; 3LL9 A; 2OGX A; 4F6T B; 4NDP A; 2VA1 A; 3S6K A; 3U6U A; 2AP9 A; 1OHB A; 3QUR A; 4USJ A; 4KZT A; 1OH9 A; 3T7B A; 2HMF A; 2V4Y A; 3ZZG A; 2V5H A; 2BRX A; 3C1N A; 3LKK A; 4JZ9 A; 3ZZF A; 1B7B A; 2WXB A; 4NDR B; 2JJX A; 2IJ9 A; 4AXS A; 2J5V A; 3C1M A; 4F6T A; 3S6G A; 4JZ8 A; 3B8G A; 4Q1T A; 2J4L A; 2J4K A; 1GS5 A; 3AB4 A; 4AB7 A; 2W21 A; 2E9Y A; 3D40 A; 3AAW A; 4NDR A; 1E19 A; 2BRI A; 3QVF A; 3QUN A; 3L76 A; 2R8V A; 3K56 A; 4NDO B; 1GSJ A;
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