3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
2J4JA 2IJ9A 4NDRB 3QUOA 2WE5A 3C1MA 3AB4A 2AP9A 2R98A 2BNFA 2J0XA 1GS5A 3LL9A 2JJ4A 2BNDA 2WXBA 3C1NA 2HMFA 4I49A 4NDRA 4Q1TA 2BUFA 4F6TB 2OGXA 2BRIA 1OH9A 4AB7A 2BNEA 3D2PA 4NDOB 3LKKA 2BTYA 2AKOA 2WE4A 3ZZGA 4JZ9A 2CDQA 3K56A 3ZZHA 3L76A 4JZ8A 4JZ7A 3TVIA 2J0WA 2OGXB 2J5VA 4F6TA 3EK6A 3QVHA 3U6UA 2JI5A 4NDOA 2RD5A 3T7BA 4USJA 2J5TA 3D40A 2JJXA 2V5HA 1YBDA 3S6KA 3D41A 4OLCA 2E9YA 3KZFA 2R8VA 3QUNA 3QURA 2J4KA 3K52A 3L86A 1E19A 1GSJA 3EK5A 3WWMA 3C20A 3ZZIA 3AB2A 4KZTA 1OHAA 2X2WA 3QVFA 3AAWA 2BRXA 3S6GA 3WWNA 1Z9DA 3S6HA 3NWYA 3K4OA 4NDPB 3ZZFA 4AXSA 2VA1A 3LL5A 2W21A 4NDQB 2BMUA 4NDPA 3K4YA 1B7BA 4A7WA 2V4YA 1OHBA 3B8GA 4A7XA 3D2MA 2A1FA 4NDQA 2J4LA
chains in the Genus database with same CATH superfamily
2J4JA 2IJ9A 4NDRB 3QUOA 2WE5A 3C1MA 3AB4A 2AP9A 2R98A 2BNFA 2J0XA 1GS5A 3LL9A 2JJ4A 2BNDA 2WXBA 3C1NA 2HMFA 4I49A 4NDRA 4Q1TA 2BUFA 4F6TB 2OGXA 2BRIA 1OH9A 4AB7A 2BNEA 3D2PA 4NDOB 3LKKA 2BTYA 2AKOA 2WE4A 3ZZGA 4JZ9A 2CDQA 3K56A 3ZZHA 3L76A 4JZ8A 4JZ7A 3TVIA 2J0WA 2OGXB 2J5VA 4F6TA 3EK6A 3QVHA 3U6UA 2JI5A 4NDOA 2RD5A 3T7BA 4USJA 2J5TA 3D40A 2JJXA 2V5HA 1YBDA 3S6KA 3D41A 4OLCA 2E9YA 3KZFA 2R8VA 3QUNA 3QURA 2J4KA 3K52A 3L86A 1E19A 1GSJA 3EK5A 3WWMA 3C20A 3ZZIA 3AB2A 4KZTA 1OHAA 2X2WA 3QVFA 3AAWA 2BRXA 3S6GA 3WWNA 1Z9DA 3S6HA 3NWYA 3K4OA 4NDPB 3ZZFA 4AXSA 2VA1A 3LL5A 2W21A 4NDQB 2BMUA 4NDPA 3K4YA 1B7BA 4A7WA 2V4YA 1OHBA 3B8GA 4A7XA 3D2MA 2A1FA 4NDQA 2J4LA
chains in the Genus database with same CATH topology
2J4JA 2IJ9A 4NDRB 3QUOA 2WE5A 3C1MA 3AB4A 2AP9A 2R98A 2BNFA 2J0XA 1GS5A 3LL9A 2JJ4A 2BNDA 2WXBA 3C1NA 2HMFA 4I49A 4NDRA 4Q1TA 2BUFA 4F6TB 2OGXA 2BRIA 1OH9A 4AB7A 2BNEA 3D2PA 4NDOB 3LKKA 2BTYA 2AKOA 2WE4A 3ZZGA 4JZ9A 2CDQA 3K56A 3ZZHA 3L76A 4JZ8A 4JZ7A 3TVIA 2J0WA 2OGXB 2J5VA 4F6TA 3EK6A 3QVHA 3U6UA 2JI5A 4NDOA 2RD5A 3T7BA 4USJA 2J5TA 3D40A 2JJXA 2V5HA 1YBDA 3S6KA 3D41A 4OLCA 2E9YA 3KZFA 2R8VA 3QUNA 3QURA 2J4KA 3K52A 3L86A 1E19A 1GSJA 3EK5A 3WWMA 3C20A 3ZZIA 3AB2A 4KZTA 1OHAA 2X2WA 3QVFA 3AAWA 2BRXA 3S6GA 3WWNA 1Z9DA 3S6HA 3NWYA 3K4OA 4NDPB 3ZZFA 4AXSA 2VA1A 3LL5A 2W21A 4NDQB 2BMUA 4NDPA 3K4YA 1B7BA 4A7WA 2V4YA 1OHBA 3B8GA 4A7XA 3D2MA 2A1FA 4NDQA 2J4LA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2J4J A;  2IJ9 A;  4NDR B;  3QUO A;  2WE5 A;  3C1M A;  3AB4 A;  2AP9 A;  2R98 A;  2BNF A;  2J0X A;  1GS5 A;  3LL9 A;  2JJ4 A;  2BND A;  2WXB A;  3C1N A;  2HMF A;  4I49 A;  4NDR A;  4Q1T A;  2BUF A;  4F6T B;  2OGX A;  2BRI A;  1OH9 A;  4AB7 A;  2BNE A;  3D2P A;  4NDO B;  3LKK A;  2BTY A;  2AKO A;  2WE4 A;  3ZZG A;  4JZ9 A;  2CDQ A;  3K56 A;  3ZZH A;  3L76 A;  4JZ8 A;  4JZ7 A;  3TVI A;  2J0W A;  2OGX B;  2J5V A;  4F6T A;  3EK6 A;  3QVH A;  3U6U A;  2JI5 A;  4NDO A;  2RD5 A;  3T7B A;  4USJ A;  2J5T A;  3D40 A;  2JJX A;  2V5H A;  1YBD A;  3S6K A;  3D41 A;  4OLC A;  2E9Y A;  3KZF A;  2R8V A;  3QUN A;  3QUR A;  2J4K A;  3K52 A;  3L86 A;  1E19 A;  1GSJ A;  3EK5 A;  3WWM A;  3C20 A;  3ZZI A;  3AB2 A;  4KZT A;  1OHA A;  2X2W A;  3QVF A;  3AAW A;  2BRX A;  3S6G A;  3WWN A;  1Z9D A;  3S6H A;  3NWY A;  3K4O A;  4NDP B;  3ZZF A;  4AXS A;  2VA1 A;  3LL5 A;  2W21 A;  4NDQ B;  2BMU A;  4NDP A;  3K4Y A;  1B7B A;  4A7W A;  2V4Y A;  1OHB A;  3B8G A;  4A7X A;  3D2M A;  2A1F A;  4NDQ A;  2J4L A; 
#chains in the Genus database with same CATH topology
 2J4J A;  2IJ9 A;  4NDR B;  3QUO A;  2WE5 A;  3C1M A;  3AB4 A;  2AP9 A;  2R98 A;  2BNF A;  2J0X A;  1GS5 A;  3LL9 A;  2JJ4 A;  2BND A;  2WXB A;  3C1N A;  2HMF A;  4I49 A;  4NDR A;  4Q1T A;  2BUF A;  4F6T B;  2OGX A;  2BRI A;  1OH9 A;  4AB7 A;  2BNE A;  3D2P A;  4NDO B;  3LKK A;  2BTY A;  2AKO A;  2WE4 A;  3ZZG A;  4JZ9 A;  2CDQ A;  3K56 A;  3ZZH A;  3L76 A;  4JZ8 A;  4JZ7 A;  3TVI A;  2J0W A;  2OGX B;  2J5V A;  4F6T A;  3EK6 A;  3QVH A;  3U6U A;  2JI5 A;  4NDO A;  2RD5 A;  3T7B A;  4USJ A;  2J5T A;  3D40 A;  2JJX A;  2V5H A;  1YBD A;  3S6K A;  3D41 A;  4OLC A;  2E9Y A;  3KZF A;  2R8V A;  3QUN A;  3QUR A;  2J4K A;  3K52 A;  3L86 A;  1E19 A;  1GSJ A;  3EK5 A;  3WWM A;  3C20 A;  3ZZI A;  3AB2 A;  4KZT A;  1OHA A;  2X2W A;  3QVF A;  3AAW A;  2BRX A;  3S6G A;  3WWN A;  1Z9D A;  3S6H A;  3NWY A;  3K4O A;  4NDP B;  3ZZF A;  4AXS A;  2VA1 A;  3LL5 A;  2W21 A;  4NDQ B;  2BMU A;  4NDP A;  3K4Y A;  1B7B A;  4A7W A;  2V4Y A;  1OHB A;  3B8G A;  4A7X A;  3D2M A;  2A1F A;  4NDQ A;  2J4L A; 
#chains in the Genus database with same CATH homology
 2J4J A;  2IJ9 A;  4NDR B;  3QUO A;  2WE5 A;  3C1M A;  3AB4 A;  2AP9 A;  2R98 A;  2BNF A;  2J0X A;  1GS5 A;  3LL9 A;  2JJ4 A;  2BND A;  2WXB A;  3C1N A;  2HMF A;  4I49 A;  4NDR A;  4Q1T A;  2BUF A;  4F6T B;  2OGX A;  2BRI A;  1OH9 A;  4AB7 A;  2BNE A;  3D2P A;  4NDO B;  3LKK A;  2BTY A;  2AKO A;  2WE4 A;  3ZZG A;  4JZ9 A;  2CDQ A;  3K56 A;  3ZZH A;  3L76 A;  4JZ8 A;  4JZ7 A;  3TVI A;  2J0W A;  2OGX B;  2J5V A;  4F6T A;  3EK6 A;  3QVH A;  3U6U A;  2JI5 A;  4NDO A;  2RD5 A;  3T7B A;  4USJ A;  2J5T A;  3D40 A;  2JJX A;  2V5H A;  1YBD A;  3S6K A;  3D41 A;  4OLC A;  2E9Y A;  3KZF A;  2R8V A;  3QUN A;  3QUR A;  2J4K A;  3K52 A;  3L86 A;  1E19 A;  1GSJ A;  3EK5 A;  3WWM A;  3C20 A;  3ZZI A;  3AB2 A;  4KZT A;  1OHA A;  2X2W A;  3QVF A;  3AAW A;  2BRX A;  3S6G A;  3WWN A;  1Z9D A;  3S6H A;  3NWY A;  3K4O A;  4NDP B;  3ZZF A;  4AXS A;  2VA1 A;  3LL5 A;  2W21 A;  4NDQ B;  2BMU A;  4NDP A;  3K4Y A;  1B7B A;  4A7W A;  2V4Y A;  1OHB A;  3B8G A;  4A7X A;  3D2M A;  2A1F A;  4NDQ A;  2J4L A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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