3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
molecule keywords Carbamate kinase
molecule tags Transferase
source organism Giardia lamblia atcc 50803
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
2AKOA 1OH9A 2W21A 4I49A 4NDQB 4NDQA 3AB2A 3LL5A 2BNFA 2R98A 3AB4A 3QVHA 2BNDA 4A7XA 3ZZHA 2JJ4A 3S6KA 3QUNA 3C20A 3L76A 2J0XA 2BTYA 1GSJA 2IJ9A 1OHAA 3L86A 2J4JA 3D41A 3NWYA 2E9YA 2BRIA 3ZZGA 3ZZFA 4NDPB 4NDPA 2R8VA 3K4YA 4NDRB 4NDRA 3ZZIA 1GS5A 2J0WA 3S6GA 4A7WA 4USJA 2V5HA 3QVFA 3KZFA 3WWNA 2AP9A 1E19A 4JZ9A 3LKKA 3D2PA 2V4YA 3B8GA 2X2WA 3U6UA 2BRXA 4JZ8A 3S6HA 2JI5A 3QUOA 3WWMA 2RD5A 4OLCA 2BUFA 3D2MA 4AXSA 3T7BA 4NDOB 4NDOA 4F6TB 4AB7A 4F6TA 2WXBA 2J5TA 4KZTA 3D40A 1YBDA 3AAWA 3EK6A 3QURA 2CDQA 2J4LA 3C1NA 2J5VA 2VA1A 1OHBA 3K4OA 3C1MA 2HMFA 3K52A 2BNEA 3EK5A 1B7BA 2A1FA 2WE5A 3TVIA 2JJXA 2WE4A 4JZ7A 2BMUA 2OGXB 4Q1TA 2OGXA 2J4KA 1Z9DA 3LL9A 3K56A
chains in the Genus database with same CATH superfamily
2AKOA 1OH9A 2W21A 4I49A 4NDQB 4NDQA 3AB2A 3LL5A 2BNFA 2R98A 3AB4A 3QVHA 2BNDA 4A7XA 3ZZHA 2JJ4A 3S6KA 3QUNA 3C20A 3L76A 2J0XA 2BTYA 1GSJA 2IJ9A 1OHAA 3L86A 2J4JA 3D41A 3NWYA 2E9YA 2BRIA 3ZZGA 3ZZFA 4NDPB 4NDPA 2R8VA 3K4YA 4NDRB 4NDRA 3ZZIA 1GS5A 2J0WA 3S6GA 4A7WA 4USJA 2V5HA 3QVFA 3KZFA 3WWNA 2AP9A 1E19A 4JZ9A 3LKKA 3D2PA 2V4YA 3B8GA 2X2WA 3U6UA 2BRXA 4JZ8A 3S6HA 2JI5A 3QUOA 3WWMA 2RD5A 4OLCA 2BUFA 3D2MA 4AXSA 3T7BA 4NDOB 4NDOA 4F6TB 4AB7A 4F6TA 2WXBA 2J5TA 4KZTA 3D40A 1YBDA 3AAWA 3EK6A 3QURA 2CDQA 2J4LA 3C1NA 2J5VA 2VA1A 1OHBA 3K4OA 3C1MA 2HMFA 3K52A 2BNEA 3EK5A 1B7BA 2A1FA 2WE5A 3TVIA 2JJXA 2WE4A 4JZ7A 2BMUA 2OGXB 4Q1TA 2OGXA 2J4KA 1Z9DA 3LL9A 3K56A
chains in the Genus database with same CATH topology
2AKOA 1OH9A 2W21A 4I49A 4NDQB 4NDQA 3AB2A 3LL5A 2BNFA 2R98A 3AB4A 3QVHA 2BNDA 4A7XA 3ZZHA 2JJ4A 3S6KA 3QUNA 3C20A 3L76A 2J0XA 2BTYA 1GSJA 2IJ9A 1OHAA 3L86A 2J4JA 3D41A 3NWYA 2E9YA 2BRIA 3ZZGA 3ZZFA 4NDPB 4NDPA 2R8VA 3K4YA 4NDRB 4NDRA 3ZZIA 1GS5A 2J0WA 3S6GA 4A7WA 4USJA 2V5HA 3QVFA 3KZFA 3WWNA 2AP9A 1E19A 4JZ9A 3LKKA 3D2PA 2V4YA 3B8GA 2X2WA 3U6UA 2BRXA 4JZ8A 3S6HA 2JI5A 3QUOA 3WWMA 2RD5A 4OLCA 2BUFA 3D2MA 4AXSA 3T7BA 4NDOB 4NDOA 4F6TB 4AB7A 4F6TA 2WXBA 2J5TA 4KZTA 3D40A 1YBDA 3AAWA 3EK6A 3QURA 2CDQA 2J4LA 3C1NA 2J5VA 2VA1A 1OHBA 3K4OA 3C1MA 2HMFA 3K52A 2BNEA 3EK5A 1B7BA 2A1FA 2WE5A 3TVIA 2JJXA 2WE4A 4JZ7A 2BMUA 2OGXB 4Q1TA 2OGXA 2J4KA 1Z9DA 3LL9A 3K56A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2AKO A;  1OH9 A;  2W21 A;  4I49 A;  4NDQ B;  4NDQ A;  3AB2 A;  3LL5 A;  2BNF A;  2R98 A;  3AB4 A;  3QVH A;  2BND A;  4A7X A;  3ZZH A;  2JJ4 A;  3S6K A;  3QUN A;  3C20 A;  3L76 A;  2J0X A;  2BTY A;  1GSJ A;  2IJ9 A;  1OHA A;  3L86 A;  2J4J A;  3D41 A;  3NWY A;  2E9Y A;  2BRI A;  3ZZG A;  3ZZF A;  4NDP B;  4NDP A;  2R8V A;  3K4Y A;  4NDR B;  4NDR A;  3ZZI A;  1GS5 A;  2J0W A;  3S6G A;  4A7W A;  4USJ A;  2V5H A;  3QVF A;  3KZF A;  3WWN A;  2AP9 A;  1E19 A;  4JZ9 A;  3LKK A;  3D2P A;  2V4Y A;  3B8G A;  2X2W A;  3U6U A;  2BRX A;  4JZ8 A;  3S6H A;  2JI5 A;  3QUO A;  3WWM A;  2RD5 A;  4OLC A;  2BUF A;  3D2M A;  4AXS A;  3T7B A;  4NDO B;  4NDO A;  4F6T B;  4AB7 A;  4F6T A;  2WXB A;  2J5T A;  4KZT A;  3D40 A;  1YBD A;  3AAW A;  3EK6 A;  3QUR A;  2CDQ A;  2J4L A;  3C1N A;  2J5V A;  2VA1 A;  1OHB A;  3K4O A;  3C1M A;  2HMF A;  3K52 A;  2BNE A;  3EK5 A;  1B7B A;  2A1F A;  2WE5 A;  3TVI A;  2JJX A;  2WE4 A;  4JZ7 A;  2BMU A;  2OGX B;  4Q1T A;  2OGX A;  2J4K A;  1Z9D A;  3LL9 A;  3K56 A; 
#chains in the Genus database with same CATH topology
 2AKO A;  1OH9 A;  2W21 A;  4I49 A;  4NDQ B;  4NDQ A;  3AB2 A;  3LL5 A;  2BNF A;  2R98 A;  3AB4 A;  3QVH A;  2BND A;  4A7X A;  3ZZH A;  2JJ4 A;  3S6K A;  3QUN A;  3C20 A;  3L76 A;  2J0X A;  2BTY A;  1GSJ A;  2IJ9 A;  1OHA A;  3L86 A;  2J4J A;  3D41 A;  3NWY A;  2E9Y A;  2BRI A;  3ZZG A;  3ZZF A;  4NDP B;  4NDP A;  2R8V A;  3K4Y A;  4NDR B;  4NDR A;  3ZZI A;  1GS5 A;  2J0W A;  3S6G A;  4A7W A;  4USJ A;  2V5H A;  3QVF A;  3KZF A;  3WWN A;  2AP9 A;  1E19 A;  4JZ9 A;  3LKK A;  3D2P A;  2V4Y A;  3B8G A;  2X2W A;  3U6U A;  2BRX A;  4JZ8 A;  3S6H A;  2JI5 A;  3QUO A;  3WWM A;  2RD5 A;  4OLC A;  2BUF A;  3D2M A;  4AXS A;  3T7B A;  4NDO B;  4NDO A;  4F6T B;  4AB7 A;  4F6T A;  2WXB A;  2J5T A;  4KZT A;  3D40 A;  1YBD A;  3AAW A;  3EK6 A;  3QUR A;  2CDQ A;  2J4L A;  3C1N A;  2J5V A;  2VA1 A;  1OHB A;  3K4O A;  3C1M A;  2HMF A;  3K52 A;  2BNE A;  3EK5 A;  1B7B A;  2A1F A;  2WE5 A;  3TVI A;  2JJX A;  2WE4 A;  4JZ7 A;  2BMU A;  2OGX B;  4Q1T A;  2OGX A;  2J4K A;  1Z9D A;  3LL9 A;  3K56 A; 
#chains in the Genus database with same CATH homology
 2AKO A;  1OH9 A;  2W21 A;  4I49 A;  4NDQ B;  4NDQ A;  3AB2 A;  3LL5 A;  2BNF A;  2R98 A;  3AB4 A;  3QVH A;  2BND A;  4A7X A;  3ZZH A;  2JJ4 A;  3S6K A;  3QUN A;  3C20 A;  3L76 A;  2J0X A;  2BTY A;  1GSJ A;  2IJ9 A;  1OHA A;  3L86 A;  2J4J A;  3D41 A;  3NWY A;  2E9Y A;  2BRI A;  3ZZG A;  3ZZF A;  4NDP B;  4NDP A;  2R8V A;  3K4Y A;  4NDR B;  4NDR A;  3ZZI A;  1GS5 A;  2J0W A;  3S6G A;  4A7W A;  4USJ A;  2V5H A;  3QVF A;  3KZF A;  3WWN A;  2AP9 A;  1E19 A;  4JZ9 A;  3LKK A;  3D2P A;  2V4Y A;  3B8G A;  2X2W A;  3U6U A;  2BRX A;  4JZ8 A;  3S6H A;  2JI5 A;  3QUO A;  3WWM A;  2RD5 A;  4OLC A;  2BUF A;  3D2M A;  4AXS A;  3T7B A;  4NDO B;  4NDO A;  4F6T B;  4AB7 A;  4F6T A;  2WXB A;  2J5T A;  4KZT A;  3D40 A;  1YBD A;  3AAW A;  3EK6 A;  3QUR A;  2CDQ A;  2J4L A;  3C1N A;  2J5V A;  2VA1 A;  1OHB A;  3K4O A;  3C1M A;  2HMF A;  3K52 A;  2BNE A;  3EK5 A;  1B7B A;  2A1F A;  2WE5 A;  3TVI A;  2JJX A;  2WE4 A;  4JZ7 A;  2BMU A;  2OGX B;  4Q1T A;  2OGX A;  2J4K A;  1Z9D A;  3LL9 A;  3K56 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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