3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
molecule tags Transferase
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
4A7XA 2BNDA 2AP9A 2BMUA 3S6KA 3ZZIA 2OGXA 2E9YA 2BRXA 2J4LA 1OHAA 2JJ4A 3NWYA 4NDRA 3ZZHA 2CDQA 4Q1TA 4AB7A 3EK6A 3ZZFA 3C1MA 1OH9A 3D40A 3S6GA 4NDOA 3TVIA 4JZ7A 3C1NA 4NDQA 2R98A 4KZTA 4NDPA 3KZFA 3K56A 2WE4A 3AB2A 3K52A 2V4YA 3U6UA 2V5HA 2J0XA 3QVHA 2RD5A 2JJXA 2BNEA 2J4KA 4JZ9A 4JZ8A 3EK5A 1YBDA 2WE5A 2BUFA 3AB4A 3QURA 2BTYA 2WXBA 3D41A 2BNFA 2J5VA 4AXSA 1B7BA 3WWNA 4F6TB 3QUNA 3K4OA 4OLCA 3ZZGA 1GSJA 4USJA 3L76A 3LKKA 2IJ9A 1Z9DA 1E19A 1OHBA 3QUOA 3LL5A 2J5TA 3S6HA 1GS5A 4A7WA 3L86A 2BRIA 2HMFA 3C20A 2JI5A 2OGXB 3D2PA 3B8GA 4F6TA 3K4YA 2A1FA 2W21A 2J4JA 3WWMA 2AKOA 2J0WA 4NDRB 3AAWA 3T7BA 4I49A 4NDOB 2R8VA 2X2WA 2VA1A 3D2MA 4NDQB 3QVFA 4NDPB 3LL9A
chains in the Genus database with same CATH superfamily
4A7XA 2BNDA 2AP9A 2BMUA 3S6KA 3ZZIA 2OGXA 2E9YA 2BRXA 2J4LA 1OHAA 2JJ4A 3NWYA 4NDRA 3ZZHA 2CDQA 4Q1TA 4AB7A 3EK6A 3ZZFA 3C1MA 1OH9A 3D40A 3S6GA 4NDOA 3TVIA 4JZ7A 3C1NA 4NDQA 2R98A 4KZTA 4NDPA 3KZFA 3K56A 2WE4A 3AB2A 3K52A 2V4YA 3U6UA 2V5HA 2J0XA 3QVHA 2RD5A 2JJXA 2BNEA 2J4KA 4JZ9A 4JZ8A 3EK5A 1YBDA 2WE5A 2BUFA 3AB4A 3QURA 2BTYA 2WXBA 3D41A 2BNFA 2J5VA 4AXSA 1B7BA 3WWNA 4F6TB 3QUNA 3K4OA 4OLCA 3ZZGA 1GSJA 4USJA 3L76A 3LKKA 2IJ9A 1Z9DA 1E19A 1OHBA 3QUOA 3LL5A 2J5TA 3S6HA 1GS5A 4A7WA 3L86A 2BRIA 2HMFA 3C20A 2JI5A 2OGXB 3D2PA 3B8GA 4F6TA 3K4YA 2A1FA 2W21A 2J4JA 3WWMA 2AKOA 2J0WA 4NDRB 3AAWA 3T7BA 4I49A 4NDOB 2R8VA 2X2WA 2VA1A 3D2MA 4NDQB 3QVFA 4NDPB 3LL9A
chains in the Genus database with same CATH topology
4A7XA 2BNDA 2AP9A 2BMUA 3S6KA 3ZZIA 2OGXA 2E9YA 2BRXA 2J4LA 1OHAA 2JJ4A 3NWYA 4NDRA 3ZZHA 2CDQA 4Q1TA 4AB7A 3EK6A 3ZZFA 3C1MA 1OH9A 3D40A 3S6GA 4NDOA 3TVIA 4JZ7A 3C1NA 4NDQA 2R98A 4KZTA 4NDPA 3KZFA 3K56A 2WE4A 3AB2A 3K52A 2V4YA 3U6UA 2V5HA 2J0XA 3QVHA 2RD5A 2JJXA 2BNEA 2J4KA 4JZ9A 4JZ8A 3EK5A 1YBDA 2WE5A 2BUFA 3AB4A 3QURA 2BTYA 2WXBA 3D41A 2BNFA 2J5VA 4AXSA 1B7BA 3WWNA 4F6TB 3QUNA 3K4OA 4OLCA 3ZZGA 1GSJA 4USJA 3L76A 3LKKA 2IJ9A 1Z9DA 1E19A 1OHBA 3QUOA 3LL5A 2J5TA 3S6HA 1GS5A 4A7WA 3L86A 2BRIA 2HMFA 3C20A 2JI5A 2OGXB 3D2PA 3B8GA 4F6TA 3K4YA 2A1FA 2W21A 2J4JA 3WWMA 2AKOA 2J0WA 4NDRB 3AAWA 3T7BA 4I49A 4NDOB 2R8VA 2X2WA 2VA1A 3D2MA 4NDQB 3QVFA 4NDPB 3LL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A7X A;  2BND A;  2AP9 A;  2BMU A;  3S6K A;  3ZZI A;  2OGX A;  2E9Y A;  2BRX A;  2J4L A;  1OHA A;  2JJ4 A;  3NWY A;  4NDR A;  3ZZH A;  2CDQ A;  4Q1T A;  4AB7 A;  3EK6 A;  3ZZF A;  3C1M A;  1OH9 A;  3D40 A;  3S6G A;  4NDO A;  3TVI A;  4JZ7 A;  3C1N A;  4NDQ A;  2R98 A;  4KZT A;  4NDP A;  3KZF A;  3K56 A;  2WE4 A;  3AB2 A;  3K52 A;  2V4Y A;  3U6U A;  2V5H A;  2J0X A;  3QVH A;  2RD5 A;  2JJX A;  2BNE A;  2J4K A;  4JZ9 A;  4JZ8 A;  3EK5 A;  1YBD A;  2WE5 A;  2BUF A;  3AB4 A;  3QUR A;  2BTY A;  2WXB A;  3D41 A;  2BNF A;  2J5V A;  4AXS A;  1B7B A;  3WWN A;  4F6T B;  3QUN A;  3K4O A;  4OLC A;  3ZZG A;  1GSJ A;  4USJ A;  3L76 A;  3LKK A;  2IJ9 A;  1Z9D A;  1E19 A;  1OHB A;  3QUO A;  3LL5 A;  2J5T A;  3S6H A;  1GS5 A;  4A7W A;  3L86 A;  2BRI A;  2HMF A;  3C20 A;  2JI5 A;  2OGX B;  3D2P A;  3B8G A;  4F6T A;  3K4Y A;  2A1F A;  2W21 A;  2J4J A;  3WWM A;  2AKO A;  2J0W A;  4NDR B;  3AAW A;  3T7B A;  4I49 A;  4NDO B;  2R8V A;  2X2W A;  2VA1 A;  3D2M A;  4NDQ B;  3QVF A;  4NDP B;  3LL9 A; 
#chains in the Genus database with same CATH topology
 4A7X A;  2BND A;  2AP9 A;  2BMU A;  3S6K A;  3ZZI A;  2OGX A;  2E9Y A;  2BRX A;  2J4L A;  1OHA A;  2JJ4 A;  3NWY A;  4NDR A;  3ZZH A;  2CDQ A;  4Q1T A;  4AB7 A;  3EK6 A;  3ZZF A;  3C1M A;  1OH9 A;  3D40 A;  3S6G A;  4NDO A;  3TVI A;  4JZ7 A;  3C1N A;  4NDQ A;  2R98 A;  4KZT A;  4NDP A;  3KZF A;  3K56 A;  2WE4 A;  3AB2 A;  3K52 A;  2V4Y A;  3U6U A;  2V5H A;  2J0X A;  3QVH A;  2RD5 A;  2JJX A;  2BNE A;  2J4K A;  4JZ9 A;  4JZ8 A;  3EK5 A;  1YBD A;  2WE5 A;  2BUF A;  3AB4 A;  3QUR A;  2BTY A;  2WXB A;  3D41 A;  2BNF A;  2J5V A;  4AXS A;  1B7B A;  3WWN A;  4F6T B;  3QUN A;  3K4O A;  4OLC A;  3ZZG A;  1GSJ A;  4USJ A;  3L76 A;  3LKK A;  2IJ9 A;  1Z9D A;  1E19 A;  1OHB A;  3QUO A;  3LL5 A;  2J5T A;  3S6H A;  1GS5 A;  4A7W A;  3L86 A;  2BRI A;  2HMF A;  3C20 A;  2JI5 A;  2OGX B;  3D2P A;  3B8G A;  4F6T A;  3K4Y A;  2A1F A;  2W21 A;  2J4J A;  3WWM A;  2AKO A;  2J0W A;  4NDR B;  3AAW A;  3T7B A;  4I49 A;  4NDO B;  2R8V A;  2X2W A;  2VA1 A;  3D2M A;  4NDQ B;  3QVF A;  4NDP B;  3LL9 A; 
#chains in the Genus database with same CATH homology
 4A7X A;  2BND A;  2AP9 A;  2BMU A;  3S6K A;  3ZZI A;  2OGX A;  2E9Y A;  2BRX A;  2J4L A;  1OHA A;  2JJ4 A;  3NWY A;  4NDR A;  3ZZH A;  2CDQ A;  4Q1T A;  4AB7 A;  3EK6 A;  3ZZF A;  3C1M A;  1OH9 A;  3D40 A;  3S6G A;  4NDO A;  3TVI A;  4JZ7 A;  3C1N A;  4NDQ A;  2R98 A;  4KZT A;  4NDP A;  3KZF A;  3K56 A;  2WE4 A;  3AB2 A;  3K52 A;  2V4Y A;  3U6U A;  2V5H A;  2J0X A;  3QVH A;  2RD5 A;  2JJX A;  2BNE A;  2J4K A;  4JZ9 A;  4JZ8 A;  3EK5 A;  1YBD A;  2WE5 A;  2BUF A;  3AB4 A;  3QUR A;  2BTY A;  2WXB A;  3D41 A;  2BNF A;  2J5V A;  4AXS A;  1B7B A;  3WWN A;  4F6T B;  3QUN A;  3K4O A;  4OLC A;  3ZZG A;  1GSJ A;  4USJ A;  3L76 A;  3LKK A;  2IJ9 A;  1Z9D A;  1E19 A;  1OHB A;  3QUO A;  3LL5 A;  2J5T A;  3S6H A;  1GS5 A;  4A7W A;  3L86 A;  2BRI A;  2HMF A;  3C20 A;  2JI5 A;  2OGX B;  3D2P A;  3B8G A;  4F6T A;  3K4Y A;  2A1F A;  2W21 A;  2J4J A;  3WWM A;  2AKO A;  2J0W A;  4NDR B;  3AAW A;  3T7B A;  4I49 A;  4NDO B;  2R8V A;  2X2W A;  2VA1 A;  3D2M A;  4NDQ B;  3QVF A;  4NDP B;  3LL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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