3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
molecule tags Transferase
molecule keywords Carbamate kinase
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
2JI5A 3C1MA 3D40A 2X2WA 4KZTA 4NDOB 2BRIA 2E9YA 1OHBA 3S6KA 2BRXA 3D2PA 3EK5A 3K52A 2IJ9A 4A7XA 2J0WA 3ZZHA 2BUFA 4F6TA 3AAWA 3TVIA 3K56A 4NDOA 2J5TA 4USJA 3L76A 3ZZFA 2BNEA 4NDRA 3L86A 3C1NA 3QVFA 4I49A 2R98A 1YBDA 2AP9A 2J0XA 1B7BA 3ZZIA 3T7BA 4A7WA 4AB7A 3D41A 2J4LA 2A1FA 3K4YA 4NDPB 2CDQA 3AB4A 3AB2A 2OGXA 3LKKA 2BTYA 2RD5A 3WWMA 1OHAA 1E19A 4NDQB 3QUOA 3S6GA 3S6HA 3NWYA 3QVHA 3WWNA 4AXSA 3U6UA 1Z9DA 2BNFA 3KZFA 2JJXA 2J4KA 2BNDA 2HMFA 2WXBA 2WE4A 2J5VA 2AKOA 3QUNA 2V5HA 2BMUA 2VA1A 4NDQA 4OLCA 3C20A 1GSJA 1OH9A 4NDRB 4JZ8A 3QURA 2W21A 3EK6A 4JZ7A 3K4OA 3B8GA 4JZ9A 3D2MA 3ZZGA 3LL5A 3LL9A 2OGXB 2WE5A 4Q1TA 2V4YA 2JJ4A 4F6TB 2R8VA 1GS5A 4NDPA 2J4JA
chains in the Genus database with same CATH superfamily
2JI5A 3C1MA 3D40A 2X2WA 4KZTA 4NDOB 2BRIA 2E9YA 1OHBA 3S6KA 2BRXA 3D2PA 3EK5A 3K52A 2IJ9A 4A7XA 2J0WA 3ZZHA 2BUFA 4F6TA 3AAWA 3TVIA 3K56A 4NDOA 2J5TA 4USJA 3L76A 3ZZFA 2BNEA 4NDRA 3L86A 3C1NA 3QVFA 4I49A 2R98A 1YBDA 2AP9A 2J0XA 1B7BA 3ZZIA 3T7BA 4A7WA 4AB7A 3D41A 2J4LA 2A1FA 3K4YA 4NDPB 2CDQA 3AB4A 3AB2A 2OGXA 3LKKA 2BTYA 2RD5A 3WWMA 1OHAA 1E19A 4NDQB 3QUOA 3S6GA 3S6HA 3NWYA 3QVHA 3WWNA 4AXSA 3U6UA 1Z9DA 2BNFA 3KZFA 2JJXA 2J4KA 2BNDA 2HMFA 2WXBA 2WE4A 2J5VA 2AKOA 3QUNA 2V5HA 2BMUA 2VA1A 4NDQA 4OLCA 3C20A 1GSJA 1OH9A 4NDRB 4JZ8A 3QURA 2W21A 3EK6A 4JZ7A 3K4OA 3B8GA 4JZ9A 3D2MA 3ZZGA 3LL5A 3LL9A 2OGXB 2WE5A 4Q1TA 2V4YA 2JJ4A 4F6TB 2R8VA 1GS5A 4NDPA 2J4JA
chains in the Genus database with same CATH topology
2JI5A 3C1MA 3D40A 2X2WA 4KZTA 4NDOB 2BRIA 2E9YA 1OHBA 3S6KA 2BRXA 3D2PA 3EK5A 3K52A 2IJ9A 4A7XA 2J0WA 3ZZHA 2BUFA 4F6TA 3AAWA 3TVIA 3K56A 4NDOA 2J5TA 4USJA 3L76A 3ZZFA 2BNEA 4NDRA 3L86A 3C1NA 3QVFA 4I49A 2R98A 1YBDA 2AP9A 2J0XA 1B7BA 3ZZIA 3T7BA 4A7WA 4AB7A 3D41A 2J4LA 2A1FA 3K4YA 4NDPB 2CDQA 3AB4A 3AB2A 2OGXA 3LKKA 2BTYA 2RD5A 3WWMA 1OHAA 1E19A 4NDQB 3QUOA 3S6GA 3S6HA 3NWYA 3QVHA 3WWNA 4AXSA 3U6UA 1Z9DA 2BNFA 3KZFA 2JJXA 2J4KA 2BNDA 2HMFA 2WXBA 2WE4A 2J5VA 2AKOA 3QUNA 2V5HA 2BMUA 2VA1A 4NDQA 4OLCA 3C20A 1GSJA 1OH9A 4NDRB 4JZ8A 3QURA 2W21A 3EK6A 4JZ7A 3K4OA 3B8GA 4JZ9A 3D2MA 3ZZGA 3LL5A 3LL9A 2OGXB 2WE5A 4Q1TA 2V4YA 2JJ4A 4F6TB 2R8VA 1GS5A 4NDPA 2J4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JI5 A;  3C1M A;  3D40 A;  2X2W A;  4KZT A;  4NDO B;  2BRI A;  2E9Y A;  1OHB A;  3S6K A;  2BRX A;  3D2P A;  3EK5 A;  3K52 A;  2IJ9 A;  4A7X A;  2J0W A;  3ZZH A;  2BUF A;  4F6T A;  3AAW A;  3TVI A;  3K56 A;  4NDO A;  2J5T A;  4USJ A;  3L76 A;  3ZZF A;  2BNE A;  4NDR A;  3L86 A;  3C1N A;  3QVF A;  4I49 A;  2R98 A;  1YBD A;  2AP9 A;  2J0X A;  1B7B A;  3ZZI A;  3T7B A;  4A7W A;  4AB7 A;  3D41 A;  2J4L A;  2A1F A;  3K4Y A;  4NDP B;  2CDQ A;  3AB4 A;  3AB2 A;  2OGX A;  3LKK A;  2BTY A;  2RD5 A;  3WWM A;  1OHA A;  1E19 A;  4NDQ B;  3QUO A;  3S6G A;  3S6H A;  3NWY A;  3QVH A;  3WWN A;  4AXS A;  3U6U A;  1Z9D A;  2BNF A;  3KZF A;  2JJX A;  2J4K A;  2BND A;  2HMF A;  2WXB A;  2WE4 A;  2J5V A;  2AKO A;  3QUN A;  2V5H A;  2BMU A;  2VA1 A;  4NDQ A;  4OLC A;  3C20 A;  1GSJ A;  1OH9 A;  4NDR B;  4JZ8 A;  3QUR A;  2W21 A;  3EK6 A;  4JZ7 A;  3K4O A;  3B8G A;  4JZ9 A;  3D2M A;  3ZZG A;  3LL5 A;  3LL9 A;  2OGX B;  2WE5 A;  4Q1T A;  2V4Y A;  2JJ4 A;  4F6T B;  2R8V A;  1GS5 A;  4NDP A;  2J4J A; 
#chains in the Genus database with same CATH topology
 2JI5 A;  3C1M A;  3D40 A;  2X2W A;  4KZT A;  4NDO B;  2BRI A;  2E9Y A;  1OHB A;  3S6K A;  2BRX A;  3D2P A;  3EK5 A;  3K52 A;  2IJ9 A;  4A7X A;  2J0W A;  3ZZH A;  2BUF A;  4F6T A;  3AAW A;  3TVI A;  3K56 A;  4NDO A;  2J5T A;  4USJ A;  3L76 A;  3ZZF A;  2BNE A;  4NDR A;  3L86 A;  3C1N A;  3QVF A;  4I49 A;  2R98 A;  1YBD A;  2AP9 A;  2J0X A;  1B7B A;  3ZZI A;  3T7B A;  4A7W A;  4AB7 A;  3D41 A;  2J4L A;  2A1F A;  3K4Y A;  4NDP B;  2CDQ A;  3AB4 A;  3AB2 A;  2OGX A;  3LKK A;  2BTY A;  2RD5 A;  3WWM A;  1OHA A;  1E19 A;  4NDQ B;  3QUO A;  3S6G A;  3S6H A;  3NWY A;  3QVH A;  3WWN A;  4AXS A;  3U6U A;  1Z9D A;  2BNF A;  3KZF A;  2JJX A;  2J4K A;  2BND A;  2HMF A;  2WXB A;  2WE4 A;  2J5V A;  2AKO A;  3QUN A;  2V5H A;  2BMU A;  2VA1 A;  4NDQ A;  4OLC A;  3C20 A;  1GSJ A;  1OH9 A;  4NDR B;  4JZ8 A;  3QUR A;  2W21 A;  3EK6 A;  4JZ7 A;  3K4O A;  3B8G A;  4JZ9 A;  3D2M A;  3ZZG A;  3LL5 A;  3LL9 A;  2OGX B;  2WE5 A;  4Q1T A;  2V4Y A;  2JJ4 A;  4F6T B;  2R8V A;  1GS5 A;  4NDP A;  2J4J A; 
#chains in the Genus database with same CATH homology
 2JI5 A;  3C1M A;  3D40 A;  2X2W A;  4KZT A;  4NDO B;  2BRI A;  2E9Y A;  1OHB A;  3S6K A;  2BRX A;  3D2P A;  3EK5 A;  3K52 A;  2IJ9 A;  4A7X A;  2J0W A;  3ZZH A;  2BUF A;  4F6T A;  3AAW A;  3TVI A;  3K56 A;  4NDO A;  2J5T A;  4USJ A;  3L76 A;  3ZZF A;  2BNE A;  4NDR A;  3L86 A;  3C1N A;  3QVF A;  4I49 A;  2R98 A;  1YBD A;  2AP9 A;  2J0X A;  1B7B A;  3ZZI A;  3T7B A;  4A7W A;  4AB7 A;  3D41 A;  2J4L A;  2A1F A;  3K4Y A;  4NDP B;  2CDQ A;  3AB4 A;  3AB2 A;  2OGX A;  3LKK A;  2BTY A;  2RD5 A;  3WWM A;  1OHA A;  1E19 A;  4NDQ B;  3QUO A;  3S6G A;  3S6H A;  3NWY A;  3QVH A;  3WWN A;  4AXS A;  3U6U A;  1Z9D A;  2BNF A;  3KZF A;  2JJX A;  2J4K A;  2BND A;  2HMF A;  2WXB A;  2WE4 A;  2J5V A;  2AKO A;  3QUN A;  2V5H A;  2BMU A;  2VA1 A;  4NDQ A;  4OLC A;  3C20 A;  1GSJ A;  1OH9 A;  4NDR B;  4JZ8 A;  3QUR A;  2W21 A;  3EK6 A;  4JZ7 A;  3K4O A;  3B8G A;  4JZ9 A;  3D2M A;  3ZZG A;  3LL5 A;  3LL9 A;  2OGX B;  2WE5 A;  4Q1T A;  2V4Y A;  2JJ4 A;  4F6T B;  2R8V A;  1GS5 A;  4NDP A;  2J4J A; 
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