3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
1OH9A 4AXSA 3KZFA 4NDOB 3S6GA 4NDQA 3L86A 4AB7A 4JZ7A 2JI5A 2HMFA 2JJXA 1E19A 3WWMA 3U6UA 2J0XA 4A7WA 2OGXB 2BRXA 2BTYA 3C20A 3C1MA 3LL5A 2V4YA 3LL9A 4NDRB 4Q1TA 4I49A 2A1FA 3ZZGA 3D41A 1OHAA 3C1NA 2W21A 2R8VA 2V5HA 2WE5A 4NDPA 3ZZFA 4F6TB 2IJ9A 4NDQB 3S6HA 3K52A 2J4JA 3S6KA 3K4YA 2CDQA 2VA1A 3QUOA 2X2WA 3AAWA 2BUFA 3L76A 4JZ9A 3QUNA 1YBDA 3K56A 2BNDA 2BNFA 3B8GA 2OGXA 2J4LA 3WWNA 3D40A 3EK5A 3QVFA 4NDRA 2BMUA 2WXBA 2R98A 3ZZIA 2WE4A 4NDOA 4OLCA 4KZTA 3D2MA 3QURA 2JJ4A 2J4KA 2E9YA 2RD5A 2AKOA 3AB4A 3D2PA 1OHBA 4F6TA 3LKKA 4NDPB 3ZZHA 3K4OA 2BRIA 1B7BA 2AP9A 2J5VA 3TVIA 2BNEA 1GSJA 2J0WA 1GS5A 3T7BA 3QVHA 2J5TA 4USJA 3NWYA 4JZ8A 4A7XA 1Z9DA 3AB2A 3EK6A
chains in the Genus database with same CATH superfamily
1OH9A 4AXSA 3KZFA 4NDOB 3S6GA 4NDQA 3L86A 4AB7A 4JZ7A 2JI5A 2HMFA 2JJXA 1E19A 3WWMA 3U6UA 2J0XA 4A7WA 2OGXB 2BRXA 2BTYA 3C20A 3C1MA 3LL5A 2V4YA 3LL9A 4NDRB 4Q1TA 4I49A 2A1FA 3ZZGA 3D41A 1OHAA 3C1NA 2W21A 2R8VA 2V5HA 2WE5A 4NDPA 3ZZFA 4F6TB 2IJ9A 4NDQB 3S6HA 3K52A 2J4JA 3S6KA 3K4YA 2CDQA 2VA1A 3QUOA 2X2WA 3AAWA 2BUFA 3L76A 4JZ9A 3QUNA 1YBDA 3K56A 2BNDA 2BNFA 3B8GA 2OGXA 2J4LA 3WWNA 3D40A 3EK5A 3QVFA 4NDRA 2BMUA 2WXBA 2R98A 3ZZIA 2WE4A 4NDOA 4OLCA 4KZTA 3D2MA 3QURA 2JJ4A 2J4KA 2E9YA 2RD5A 2AKOA 3AB4A 3D2PA 1OHBA 4F6TA 3LKKA 4NDPB 3ZZHA 3K4OA 2BRIA 1B7BA 2AP9A 2J5VA 3TVIA 2BNEA 1GSJA 2J0WA 1GS5A 3T7BA 3QVHA 2J5TA 4USJA 3NWYA 4JZ8A 4A7XA 1Z9DA 3AB2A 3EK6A
chains in the Genus database with same CATH topology
1OH9A 4AXSA 3KZFA 4NDOB 3S6GA 4NDQA 3L86A 4AB7A 4JZ7A 2JI5A 2HMFA 2JJXA 1E19A 3WWMA 3U6UA 2J0XA 4A7WA 2OGXB 2BRXA 2BTYA 3C20A 3C1MA 3LL5A 2V4YA 3LL9A 4NDRB 4Q1TA 4I49A 2A1FA 3ZZGA 3D41A 1OHAA 3C1NA 2W21A 2R8VA 2V5HA 2WE5A 4NDPA 3ZZFA 4F6TB 2IJ9A 4NDQB 3S6HA 3K52A 2J4JA 3S6KA 3K4YA 2CDQA 2VA1A 3QUOA 2X2WA 3AAWA 2BUFA 3L76A 4JZ9A 3QUNA 1YBDA 3K56A 2BNDA 2BNFA 3B8GA 2OGXA 2J4LA 3WWNA 3D40A 3EK5A 3QVFA 4NDRA 2BMUA 2WXBA 2R98A 3ZZIA 2WE4A 4NDOA 4OLCA 4KZTA 3D2MA 3QURA 2JJ4A 2J4KA 2E9YA 2RD5A 2AKOA 3AB4A 3D2PA 1OHBA 4F6TA 3LKKA 4NDPB 3ZZHA 3K4OA 2BRIA 1B7BA 2AP9A 2J5VA 3TVIA 2BNEA 1GSJA 2J0WA 1GS5A 3T7BA 3QVHA 2J5TA 4USJA 3NWYA 4JZ8A 4A7XA 1Z9DA 3AB2A 3EK6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OH9 A;  4AXS A;  3KZF A;  4NDO B;  3S6G A;  4NDQ A;  3L86 A;  4AB7 A;  4JZ7 A;  2JI5 A;  2HMF A;  2JJX A;  1E19 A;  3WWM A;  3U6U A;  2J0X A;  4A7W A;  2OGX B;  2BRX A;  2BTY A;  3C20 A;  3C1M A;  3LL5 A;  2V4Y A;  3LL9 A;  4NDR B;  4Q1T A;  4I49 A;  2A1F A;  3ZZG A;  3D41 A;  1OHA A;  3C1N A;  2W21 A;  2R8V A;  2V5H A;  2WE5 A;  4NDP A;  3ZZF A;  4F6T B;  2IJ9 A;  4NDQ B;  3S6H A;  3K52 A;  2J4J A;  3S6K A;  3K4Y A;  2CDQ A;  2VA1 A;  3QUO A;  2X2W A;  3AAW A;  2BUF A;  3L76 A;  4JZ9 A;  3QUN A;  1YBD A;  3K56 A;  2BND A;  2BNF A;  3B8G A;  2OGX A;  2J4L A;  3WWN A;  3D40 A;  3EK5 A;  3QVF A;  4NDR A;  2BMU A;  2WXB A;  2R98 A;  3ZZI A;  2WE4 A;  4NDO A;  4OLC A;  4KZT A;  3D2M A;  3QUR A;  2JJ4 A;  2J4K A;  2E9Y A;  2RD5 A;  2AKO A;  3AB4 A;  3D2P A;  1OHB A;  4F6T A;  3LKK A;  4NDP B;  3ZZH A;  3K4O A;  2BRI A;  1B7B A;  2AP9 A;  2J5V A;  3TVI A;  2BNE A;  1GSJ A;  2J0W A;  1GS5 A;  3T7B A;  3QVH A;  2J5T A;  4USJ A;  3NWY A;  4JZ8 A;  4A7X A;  1Z9D A;  3AB2 A;  3EK6 A; 
#chains in the Genus database with same CATH topology
 1OH9 A;  4AXS A;  3KZF A;  4NDO B;  3S6G A;  4NDQ A;  3L86 A;  4AB7 A;  4JZ7 A;  2JI5 A;  2HMF A;  2JJX A;  1E19 A;  3WWM A;  3U6U A;  2J0X A;  4A7W A;  2OGX B;  2BRX A;  2BTY A;  3C20 A;  3C1M A;  3LL5 A;  2V4Y A;  3LL9 A;  4NDR B;  4Q1T A;  4I49 A;  2A1F A;  3ZZG A;  3D41 A;  1OHA A;  3C1N A;  2W21 A;  2R8V A;  2V5H A;  2WE5 A;  4NDP A;  3ZZF A;  4F6T B;  2IJ9 A;  4NDQ B;  3S6H A;  3K52 A;  2J4J A;  3S6K A;  3K4Y A;  2CDQ A;  2VA1 A;  3QUO A;  2X2W A;  3AAW A;  2BUF A;  3L76 A;  4JZ9 A;  3QUN A;  1YBD A;  3K56 A;  2BND A;  2BNF A;  3B8G A;  2OGX A;  2J4L A;  3WWN A;  3D40 A;  3EK5 A;  3QVF A;  4NDR A;  2BMU A;  2WXB A;  2R98 A;  3ZZI A;  2WE4 A;  4NDO A;  4OLC A;  4KZT A;  3D2M A;  3QUR A;  2JJ4 A;  2J4K A;  2E9Y A;  2RD5 A;  2AKO A;  3AB4 A;  3D2P A;  1OHB A;  4F6T A;  3LKK A;  4NDP B;  3ZZH A;  3K4O A;  2BRI A;  1B7B A;  2AP9 A;  2J5V A;  3TVI A;  2BNE A;  1GSJ A;  2J0W A;  1GS5 A;  3T7B A;  3QVH A;  2J5T A;  4USJ A;  3NWY A;  4JZ8 A;  4A7X A;  1Z9D A;  3AB2 A;  3EK6 A; 
#chains in the Genus database with same CATH homology
 1OH9 A;  4AXS A;  3KZF A;  4NDO B;  3S6G A;  4NDQ A;  3L86 A;  4AB7 A;  4JZ7 A;  2JI5 A;  2HMF A;  2JJX A;  1E19 A;  3WWM A;  3U6U A;  2J0X A;  4A7W A;  2OGX B;  2BRX A;  2BTY A;  3C20 A;  3C1M A;  3LL5 A;  2V4Y A;  3LL9 A;  4NDR B;  4Q1T A;  4I49 A;  2A1F A;  3ZZG A;  3D41 A;  1OHA A;  3C1N A;  2W21 A;  2R8V A;  2V5H A;  2WE5 A;  4NDP A;  3ZZF A;  4F6T B;  2IJ9 A;  4NDQ B;  3S6H A;  3K52 A;  2J4J A;  3S6K A;  3K4Y A;  2CDQ A;  2VA1 A;  3QUO A;  2X2W A;  3AAW A;  2BUF A;  3L76 A;  4JZ9 A;  3QUN A;  1YBD A;  3K56 A;  2BND A;  2BNF A;  3B8G A;  2OGX A;  2J4L A;  3WWN A;  3D40 A;  3EK5 A;  3QVF A;  4NDR A;  2BMU A;  2WXB A;  2R98 A;  3ZZI A;  2WE4 A;  4NDO A;  4OLC A;  4KZT A;  3D2M A;  3QUR A;  2JJ4 A;  2J4K A;  2E9Y A;  2RD5 A;  2AKO A;  3AB4 A;  3D2P A;  1OHB A;  4F6T A;  3LKK A;  4NDP B;  3ZZH A;  3K4O A;  2BRI A;  1B7B A;  2AP9 A;  2J5V A;  3TVI A;  2BNE A;  1GSJ A;  2J0W A;  1GS5 A;  3T7B A;  3QVH A;  2J5T A;  4USJ A;  3NWY A;  4JZ8 A;  4A7X A;  1Z9D A;  3AB2 A;  3EK6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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