3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
molecule keywords Carbamate kinase
molecule tags Transferase
source organism Giardia lamblia atcc 50803
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
2J4KA 2WE5A 4A7XA 3ZZFA 3ZZHA 4NDPA 3WWNA 2HMFA 2WXBA 4Q1TA 2R98A 3T7BA 4A7WA 4NDPB 2CDQA 3EK5A 3QUOA 3D40A 2E9YA 4KZTA 2BRXA 2J0XA 3D2PA 3WWMA 3L76A 4OLCA 3C1NA 4AB7A 2J5TA 2RD5A 2BRIA 2J0WA 4NDOA 1YBDA 2BTYA 3K56A 3QVFA 4AXSA 3KZFA 2J5VA 3ZZIA 4F6TB 4NDOB 2JI5A 2V5HA 2VA1A 4NDRB 3S6KA 3QUNA 2V4YA 3D2MA 2J4LA 2WE4A 4JZ7A 2OGXB 3D41A 4F6TA 1B7BA 3B8GA 4NDRA 1GS5A 2J4JA 4I49A 4JZ9A 1OHBA 3K52A 1OHAA 2R8VA 3S6GA 2OGXA 3C1MA 2W21A 2AKOA 1Z9DA 3NWYA 4JZ8A 3QVHA 4NDQA 3LL9A 3K4OA 3LKKA 4USJA 3U6UA 2A1FA 1GSJA 2IJ9A 3LL5A 2AP9A 2BMUA 4NDQB 3ZZGA 3QURA 3S6HA 2BNDA 3AAWA 2BNEA 1OH9A 2BNFA 2JJXA 3AB2A 2BUFA 2X2WA 3L86A 3AB4A 2JJ4A 3EK6A 3C20A 3TVIA 1E19A 3K4YA
chains in the Genus database with same CATH superfamily
2J4KA 2WE5A 4A7XA 3ZZFA 3ZZHA 4NDPA 3WWNA 2HMFA 2WXBA 4Q1TA 2R98A 3T7BA 4A7WA 4NDPB 2CDQA 3EK5A 3QUOA 3D40A 2E9YA 4KZTA 2BRXA 2J0XA 3D2PA 3WWMA 3L76A 4OLCA 3C1NA 4AB7A 2J5TA 2RD5A 2BRIA 2J0WA 4NDOA 1YBDA 2BTYA 3K56A 3QVFA 4AXSA 3KZFA 2J5VA 3ZZIA 4F6TB 4NDOB 2JI5A 2V5HA 2VA1A 4NDRB 3S6KA 3QUNA 2V4YA 3D2MA 2J4LA 2WE4A 4JZ7A 2OGXB 3D41A 4F6TA 1B7BA 3B8GA 4NDRA 1GS5A 2J4JA 4I49A 4JZ9A 1OHBA 3K52A 1OHAA 2R8VA 3S6GA 2OGXA 3C1MA 2W21A 2AKOA 1Z9DA 3NWYA 4JZ8A 3QVHA 4NDQA 3LL9A 3K4OA 3LKKA 4USJA 3U6UA 2A1FA 1GSJA 2IJ9A 3LL5A 2AP9A 2BMUA 4NDQB 3ZZGA 3QURA 3S6HA 2BNDA 3AAWA 2BNEA 1OH9A 2BNFA 2JJXA 3AB2A 2BUFA 2X2WA 3L86A 3AB4A 2JJ4A 3EK6A 3C20A 3TVIA 1E19A 3K4YA
chains in the Genus database with same CATH topology
2J4KA 2WE5A 4A7XA 3ZZFA 3ZZHA 4NDPA 3WWNA 2HMFA 2WXBA 4Q1TA 2R98A 3T7BA 4A7WA 4NDPB 2CDQA 3EK5A 3QUOA 3D40A 2E9YA 4KZTA 2BRXA 2J0XA 3D2PA 3WWMA 3L76A 4OLCA 3C1NA 4AB7A 2J5TA 2RD5A 2BRIA 2J0WA 4NDOA 1YBDA 2BTYA 3K56A 3QVFA 4AXSA 3KZFA 2J5VA 3ZZIA 4F6TB 4NDOB 2JI5A 2V5HA 2VA1A 4NDRB 3S6KA 3QUNA 2V4YA 3D2MA 2J4LA 2WE4A 4JZ7A 2OGXB 3D41A 4F6TA 1B7BA 3B8GA 4NDRA 1GS5A 2J4JA 4I49A 4JZ9A 1OHBA 3K52A 1OHAA 2R8VA 3S6GA 2OGXA 3C1MA 2W21A 2AKOA 1Z9DA 3NWYA 4JZ8A 3QVHA 4NDQA 3LL9A 3K4OA 3LKKA 4USJA 3U6UA 2A1FA 1GSJA 2IJ9A 3LL5A 2AP9A 2BMUA 4NDQB 3ZZGA 3QURA 3S6HA 2BNDA 3AAWA 2BNEA 1OH9A 2BNFA 2JJXA 3AB2A 2BUFA 2X2WA 3L86A 3AB4A 2JJ4A 3EK6A 3C20A 3TVIA 1E19A 3K4YA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2J4K A;  2WE5 A;  4A7X A;  3ZZF A;  3ZZH A;  4NDP A;  3WWN A;  2HMF A;  2WXB A;  4Q1T A;  2R98 A;  3T7B A;  4A7W A;  4NDP B;  2CDQ A;  3EK5 A;  3QUO A;  3D40 A;  2E9Y A;  4KZT A;  2BRX A;  2J0X A;  3D2P A;  3WWM A;  3L76 A;  4OLC A;  3C1N A;  4AB7 A;  2J5T A;  2RD5 A;  2BRI A;  2J0W A;  4NDO A;  1YBD A;  2BTY A;  3K56 A;  3QVF A;  4AXS A;  3KZF A;  2J5V A;  3ZZI A;  4F6T B;  4NDO B;  2JI5 A;  2V5H A;  2VA1 A;  4NDR B;  3S6K A;  3QUN A;  2V4Y A;  3D2M A;  2J4L A;  2WE4 A;  4JZ7 A;  2OGX B;  3D41 A;  4F6T A;  1B7B A;  3B8G A;  4NDR A;  1GS5 A;  2J4J A;  4I49 A;  4JZ9 A;  1OHB A;  3K52 A;  1OHA A;  2R8V A;  3S6G A;  2OGX A;  3C1M A;  2W21 A;  2AKO A;  1Z9D A;  3NWY A;  4JZ8 A;  3QVH A;  4NDQ A;  3LL9 A;  3K4O A;  3LKK A;  4USJ A;  3U6U A;  2A1F A;  1GSJ A;  2IJ9 A;  3LL5 A;  2AP9 A;  2BMU A;  4NDQ B;  3ZZG A;  3QUR A;  3S6H A;  2BND A;  3AAW A;  2BNE A;  1OH9 A;  2BNF A;  2JJX A;  3AB2 A;  2BUF A;  2X2W A;  3L86 A;  3AB4 A;  2JJ4 A;  3EK6 A;  3C20 A;  3TVI A;  1E19 A;  3K4Y A; 
#chains in the Genus database with same CATH topology
 2J4K A;  2WE5 A;  4A7X A;  3ZZF A;  3ZZH A;  4NDP A;  3WWN A;  2HMF A;  2WXB A;  4Q1T A;  2R98 A;  3T7B A;  4A7W A;  4NDP B;  2CDQ A;  3EK5 A;  3QUO A;  3D40 A;  2E9Y A;  4KZT A;  2BRX A;  2J0X A;  3D2P A;  3WWM A;  3L76 A;  4OLC A;  3C1N A;  4AB7 A;  2J5T A;  2RD5 A;  2BRI A;  2J0W A;  4NDO A;  1YBD A;  2BTY A;  3K56 A;  3QVF A;  4AXS A;  3KZF A;  2J5V A;  3ZZI A;  4F6T B;  4NDO B;  2JI5 A;  2V5H A;  2VA1 A;  4NDR B;  3S6K A;  3QUN A;  2V4Y A;  3D2M A;  2J4L A;  2WE4 A;  4JZ7 A;  2OGX B;  3D41 A;  4F6T A;  1B7B A;  3B8G A;  4NDR A;  1GS5 A;  2J4J A;  4I49 A;  4JZ9 A;  1OHB A;  3K52 A;  1OHA A;  2R8V A;  3S6G A;  2OGX A;  3C1M A;  2W21 A;  2AKO A;  1Z9D A;  3NWY A;  4JZ8 A;  3QVH A;  4NDQ A;  3LL9 A;  3K4O A;  3LKK A;  4USJ A;  3U6U A;  2A1F A;  1GSJ A;  2IJ9 A;  3LL5 A;  2AP9 A;  2BMU A;  4NDQ B;  3ZZG A;  3QUR A;  3S6H A;  2BND A;  3AAW A;  2BNE A;  1OH9 A;  2BNF A;  2JJX A;  3AB2 A;  2BUF A;  2X2W A;  3L86 A;  3AB4 A;  2JJ4 A;  3EK6 A;  3C20 A;  3TVI A;  1E19 A;  3K4Y A; 
#chains in the Genus database with same CATH homology
 2J4K A;  2WE5 A;  4A7X A;  3ZZF A;  3ZZH A;  4NDP A;  3WWN A;  2HMF A;  2WXB A;  4Q1T A;  2R98 A;  3T7B A;  4A7W A;  4NDP B;  2CDQ A;  3EK5 A;  3QUO A;  3D40 A;  2E9Y A;  4KZT A;  2BRX A;  2J0X A;  3D2P A;  3WWM A;  3L76 A;  4OLC A;  3C1N A;  4AB7 A;  2J5T A;  2RD5 A;  2BRI A;  2J0W A;  4NDO A;  1YBD A;  2BTY A;  3K56 A;  3QVF A;  4AXS A;  3KZF A;  2J5V A;  3ZZI A;  4F6T B;  4NDO B;  2JI5 A;  2V5H A;  2VA1 A;  4NDR B;  3S6K A;  3QUN A;  2V4Y A;  3D2M A;  2J4L A;  2WE4 A;  4JZ7 A;  2OGX B;  3D41 A;  4F6T A;  1B7B A;  3B8G A;  4NDR A;  1GS5 A;  2J4J A;  4I49 A;  4JZ9 A;  1OHB A;  3K52 A;  1OHA A;  2R8V A;  3S6G A;  2OGX A;  3C1M A;  2W21 A;  2AKO A;  1Z9D A;  3NWY A;  4JZ8 A;  3QVH A;  4NDQ A;  3LL9 A;  3K4O A;  3LKK A;  4USJ A;  3U6U A;  2A1F A;  1GSJ A;  2IJ9 A;  3LL5 A;  2AP9 A;  2BMU A;  4NDQ B;  3ZZG A;  3QUR A;  3S6H A;  2BND A;  3AAW A;  2BNE A;  1OH9 A;  2BNF A;  2JJX A;  3AB2 A;  2BUF A;  2X2W A;  3L86 A;  3AB4 A;  2JJ4 A;  3EK6 A;  3C20 A;  3TVI A;  1E19 A;  3K4Y A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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