3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
molecule tags Transferase
source organism Giardia lamblia atcc 50803
molecule keywords Carbamate kinase
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
4JZ8A 1GSJA 4F6TA 2AP9A 2J0XA 3QVFA 4NDPA 3K56A 4I49A 3ZZIA 1Z9DA 3ZZGA 2A1FA 4NDRB 2OGXB 3AB4A 2BNDA 3L86A 2BNEA 2X2WA 3ZZFA 2BNFA 2J4LA 3C1NA 3L76A 3QVHA 4NDQA 3LL5A 2OGXA 2JJXA 2JJ4A 2VA1A 3WWNA 3B8GA 1OHBA 2J4JA 4A7WA 3LKKA 1OHAA 3TVIA 1YBDA 3EK6A 2R8VA 4NDQB 3D41A 2J0WA 3S6KA 2BRXA 3C1MA 1OH9A 4JZ9A 3WWMA 4A7XA 1B7BA 3D40A 3ZZHA 3D2MA 2W21A 3K52A 2BUFA 4NDOB 2V4YA 4USJA 3LL9A 3T7BA 2J5VA 2CDQA 2R98A 2J5TA 3QURA 4JZ7A 4AXSA 4NDOA 2JI5A 3QUNA 4Q1TA 4AB7A 3K4YA 2AKOA 2HMFA 3NWYA 2RD5A 2WE5A 3AAWA 3K4OA 3S6GA 2BTYA 2E9YA 1GS5A 2BMUA 4KZTA 2J4KA 3S6HA 1E19A 2V5HA 3D2PA 4OLCA 3AB2A 4F6TB 2BRIA 2WE4A 4NDRA 3EK5A 2IJ9A 3U6UA 2WXBA 3KZFA 4NDPB 3QUOA 3C20A
chains in the Genus database with same CATH superfamily
4JZ8A 1GSJA 4F6TA 2AP9A 2J0XA 3QVFA 4NDPA 3K56A 4I49A 3ZZIA 1Z9DA 3ZZGA 2A1FA 4NDRB 2OGXB 3AB4A 2BNDA 3L86A 2BNEA 2X2WA 3ZZFA 2BNFA 2J4LA 3C1NA 3L76A 3QVHA 4NDQA 3LL5A 2OGXA 2JJXA 2JJ4A 2VA1A 3WWNA 3B8GA 1OHBA 2J4JA 4A7WA 3LKKA 1OHAA 3TVIA 1YBDA 3EK6A 2R8VA 4NDQB 3D41A 2J0WA 3S6KA 2BRXA 3C1MA 1OH9A 4JZ9A 3WWMA 4A7XA 1B7BA 3D40A 3ZZHA 3D2MA 2W21A 3K52A 2BUFA 4NDOB 2V4YA 4USJA 3LL9A 3T7BA 2J5VA 2CDQA 2R98A 2J5TA 3QURA 4JZ7A 4AXSA 4NDOA 2JI5A 3QUNA 4Q1TA 4AB7A 3K4YA 2AKOA 2HMFA 3NWYA 2RD5A 2WE5A 3AAWA 3K4OA 3S6GA 2BTYA 2E9YA 1GS5A 2BMUA 4KZTA 2J4KA 3S6HA 1E19A 2V5HA 3D2PA 4OLCA 3AB2A 4F6TB 2BRIA 2WE4A 4NDRA 3EK5A 2IJ9A 3U6UA 2WXBA 3KZFA 4NDPB 3QUOA 3C20A
chains in the Genus database with same CATH topology
4JZ8A 1GSJA 4F6TA 2AP9A 2J0XA 3QVFA 4NDPA 3K56A 4I49A 3ZZIA 1Z9DA 3ZZGA 2A1FA 4NDRB 2OGXB 3AB4A 2BNDA 3L86A 2BNEA 2X2WA 3ZZFA 2BNFA 2J4LA 3C1NA 3L76A 3QVHA 4NDQA 3LL5A 2OGXA 2JJXA 2JJ4A 2VA1A 3WWNA 3B8GA 1OHBA 2J4JA 4A7WA 3LKKA 1OHAA 3TVIA 1YBDA 3EK6A 2R8VA 4NDQB 3D41A 2J0WA 3S6KA 2BRXA 3C1MA 1OH9A 4JZ9A 3WWMA 4A7XA 1B7BA 3D40A 3ZZHA 3D2MA 2W21A 3K52A 2BUFA 4NDOB 2V4YA 4USJA 3LL9A 3T7BA 2J5VA 2CDQA 2R98A 2J5TA 3QURA 4JZ7A 4AXSA 4NDOA 2JI5A 3QUNA 4Q1TA 4AB7A 3K4YA 2AKOA 2HMFA 3NWYA 2RD5A 2WE5A 3AAWA 3K4OA 3S6GA 2BTYA 2E9YA 1GS5A 2BMUA 4KZTA 2J4KA 3S6HA 1E19A 2V5HA 3D2PA 4OLCA 3AB2A 4F6TB 2BRIA 2WE4A 4NDRA 3EK5A 2IJ9A 3U6UA 2WXBA 3KZFA 4NDPB 3QUOA 3C20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JZ8 A;  1GSJ A;  4F6T A;  2AP9 A;  2J0X A;  3QVF A;  4NDP A;  3K56 A;  4I49 A;  3ZZI A;  1Z9D A;  3ZZG A;  2A1F A;  4NDR B;  2OGX B;  3AB4 A;  2BND A;  3L86 A;  2BNE A;  2X2W A;  3ZZF A;  2BNF A;  2J4L A;  3C1N A;  3L76 A;  3QVH A;  4NDQ A;  3LL5 A;  2OGX A;  2JJX A;  2JJ4 A;  2VA1 A;  3WWN A;  3B8G A;  1OHB A;  2J4J A;  4A7W A;  3LKK A;  1OHA A;  3TVI A;  1YBD A;  3EK6 A;  2R8V A;  4NDQ B;  3D41 A;  2J0W A;  3S6K A;  2BRX A;  3C1M A;  1OH9 A;  4JZ9 A;  3WWM A;  4A7X A;  1B7B A;  3D40 A;  3ZZH A;  3D2M A;  2W21 A;  3K52 A;  2BUF A;  4NDO B;  2V4Y A;  4USJ A;  3LL9 A;  3T7B A;  2J5V A;  2CDQ A;  2R98 A;  2J5T A;  3QUR A;  4JZ7 A;  4AXS A;  4NDO A;  2JI5 A;  3QUN A;  4Q1T A;  4AB7 A;  3K4Y A;  2AKO A;  2HMF A;  3NWY A;  2RD5 A;  2WE5 A;  3AAW A;  3K4O A;  3S6G A;  2BTY A;  2E9Y A;  1GS5 A;  2BMU A;  4KZT A;  2J4K A;  3S6H A;  1E19 A;  2V5H A;  3D2P A;  4OLC A;  3AB2 A;  4F6T B;  2BRI A;  2WE4 A;  4NDR A;  3EK5 A;  2IJ9 A;  3U6U A;  2WXB A;  3KZF A;  4NDP B;  3QUO A;  3C20 A; 
#chains in the Genus database with same CATH topology
 4JZ8 A;  1GSJ A;  4F6T A;  2AP9 A;  2J0X A;  3QVF A;  4NDP A;  3K56 A;  4I49 A;  3ZZI A;  1Z9D A;  3ZZG A;  2A1F A;  4NDR B;  2OGX B;  3AB4 A;  2BND A;  3L86 A;  2BNE A;  2X2W A;  3ZZF A;  2BNF A;  2J4L A;  3C1N A;  3L76 A;  3QVH A;  4NDQ A;  3LL5 A;  2OGX A;  2JJX A;  2JJ4 A;  2VA1 A;  3WWN A;  3B8G A;  1OHB A;  2J4J A;  4A7W A;  3LKK A;  1OHA A;  3TVI A;  1YBD A;  3EK6 A;  2R8V A;  4NDQ B;  3D41 A;  2J0W A;  3S6K A;  2BRX A;  3C1M A;  1OH9 A;  4JZ9 A;  3WWM A;  4A7X A;  1B7B A;  3D40 A;  3ZZH A;  3D2M A;  2W21 A;  3K52 A;  2BUF A;  4NDO B;  2V4Y A;  4USJ A;  3LL9 A;  3T7B A;  2J5V A;  2CDQ A;  2R98 A;  2J5T A;  3QUR A;  4JZ7 A;  4AXS A;  4NDO A;  2JI5 A;  3QUN A;  4Q1T A;  4AB7 A;  3K4Y A;  2AKO A;  2HMF A;  3NWY A;  2RD5 A;  2WE5 A;  3AAW A;  3K4O A;  3S6G A;  2BTY A;  2E9Y A;  1GS5 A;  2BMU A;  4KZT A;  2J4K A;  3S6H A;  1E19 A;  2V5H A;  3D2P A;  4OLC A;  3AB2 A;  4F6T B;  2BRI A;  2WE4 A;  4NDR A;  3EK5 A;  2IJ9 A;  3U6U A;  2WXB A;  3KZF A;  4NDP B;  3QUO A;  3C20 A; 
#chains in the Genus database with same CATH homology
 4JZ8 A;  1GSJ A;  4F6T A;  2AP9 A;  2J0X A;  3QVF A;  4NDP A;  3K56 A;  4I49 A;  3ZZI A;  1Z9D A;  3ZZG A;  2A1F A;  4NDR B;  2OGX B;  3AB4 A;  2BND A;  3L86 A;  2BNE A;  2X2W A;  3ZZF A;  2BNF A;  2J4L A;  3C1N A;  3L76 A;  3QVH A;  4NDQ A;  3LL5 A;  2OGX A;  2JJX A;  2JJ4 A;  2VA1 A;  3WWN A;  3B8G A;  1OHB A;  2J4J A;  4A7W A;  3LKK A;  1OHA A;  3TVI A;  1YBD A;  3EK6 A;  2R8V A;  4NDQ B;  3D41 A;  2J0W A;  3S6K A;  2BRX A;  3C1M A;  1OH9 A;  4JZ9 A;  3WWM A;  4A7X A;  1B7B A;  3D40 A;  3ZZH A;  3D2M A;  2W21 A;  3K52 A;  2BUF A;  4NDO B;  2V4Y A;  4USJ A;  3LL9 A;  3T7B A;  2J5V A;  2CDQ A;  2R98 A;  2J5T A;  3QUR A;  4JZ7 A;  4AXS A;  4NDO A;  2JI5 A;  3QUN A;  4Q1T A;  4AB7 A;  3K4Y A;  2AKO A;  2HMF A;  3NWY A;  2RD5 A;  2WE5 A;  3AAW A;  3K4O A;  3S6G A;  2BTY A;  2E9Y A;  1GS5 A;  2BMU A;  4KZT A;  2J4K A;  3S6H A;  1E19 A;  2V5H A;  3D2P A;  4OLC A;  3AB2 A;  4F6T B;  2BRI A;  2WE4 A;  4NDR A;  3EK5 A;  2IJ9 A;  3U6U A;  2WXB A;  3KZF A;  4NDP B;  3QUO A;  3C20 A; 
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similar chains in the Genus database (?% sequence similarity)
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