3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
b'SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
molecule tags Transferase
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
4JZ9A 3U6UA 4F6TA 3QUOA 2V5HA 4JZ7A 3S6HA 3S6GA 1YBDA 1OHBA 2J4LA 2X2WA 4NDQB 3K4OA 2HMFA 2JI5A 3C1NA 4NDOA 3KZFA 2V4YA 3NWYA 4NDRB 3K52A 2J5VA 3QVFA 3LL5A 3D40A 2E9YA 3TVIA 2A1FA 4KZTA 3WWNA 3L76A 2BNEA 3EK5A 4AB7A 2WE4A 1GSJA 2J5TA 3LL9A 4USJA 4JZ8A 2AP9A 4NDQA 2IJ9A 1E19A 3EK6A 2BRXA 1OH9A 1Z9DA 3D41A 3AB4A 2R98A 2OGXB 2J4JA 3C1MA 4F6TB 2J0XA 2WE5A 3D2MA 2WXBA 2CDQA 3L86A 3QVHA 1OHAA 4NDPB 3WWMA 1B7BA 2BNFA 2BTYA 2AKOA 3B8GA 2JJXA 3AAWA 3D2PA 3LKKA 4Q1TA 4AXSA 4NDRA 3ZZFA 2J0WA 1GS5A 2BNDA 2R8VA 3S6KA 2OGXA 2JJ4A 4A7XA 4A7WA 3ZZHA 3ZZIA 3ZZGA 3T7BA 2W21A 3AB2A 4OLCA 3K56A 4NDPA 2BRIA 4I49A 3K4YA 3C20A 2VA1A 3QUNA 2RD5A 3QURA 4NDOB 2BMUA 2BUFA 2J4KA
chains in the Genus database with same CATH superfamily
4JZ9A 3U6UA 4F6TA 3QUOA 2V5HA 4JZ7A 3S6HA 3S6GA 1YBDA 1OHBA 2J4LA 2X2WA 4NDQB 3K4OA 2HMFA 2JI5A 3C1NA 4NDOA 3KZFA 2V4YA 3NWYA 4NDRB 3K52A 2J5VA 3QVFA 3LL5A 3D40A 2E9YA 3TVIA 2A1FA 4KZTA 3WWNA 3L76A 2BNEA 3EK5A 4AB7A 2WE4A 1GSJA 2J5TA 3LL9A 4USJA 4JZ8A 2AP9A 4NDQA 2IJ9A 1E19A 3EK6A 2BRXA 1OH9A 1Z9DA 3D41A 3AB4A 2R98A 2OGXB 2J4JA 3C1MA 4F6TB 2J0XA 2WE5A 3D2MA 2WXBA 2CDQA 3L86A 3QVHA 1OHAA 4NDPB 3WWMA 1B7BA 2BNFA 2BTYA 2AKOA 3B8GA 2JJXA 3AAWA 3D2PA 3LKKA 4Q1TA 4AXSA 4NDRA 3ZZFA 2J0WA 1GS5A 2BNDA 2R8VA 3S6KA 2OGXA 2JJ4A 4A7XA 4A7WA 3ZZHA 3ZZIA 3ZZGA 3T7BA 2W21A 3AB2A 4OLCA 3K56A 4NDPA 2BRIA 4I49A 3K4YA 3C20A 2VA1A 3QUNA 2RD5A 3QURA 4NDOB 2BMUA 2BUFA 2J4KA
chains in the Genus database with same CATH topology
4JZ9A 3U6UA 4F6TA 3QUOA 2V5HA 4JZ7A 3S6HA 3S6GA 1YBDA 1OHBA 2J4LA 2X2WA 4NDQB 3K4OA 2HMFA 2JI5A 3C1NA 4NDOA 3KZFA 2V4YA 3NWYA 4NDRB 3K52A 2J5VA 3QVFA 3LL5A 3D40A 2E9YA 3TVIA 2A1FA 4KZTA 3WWNA 3L76A 2BNEA 3EK5A 4AB7A 2WE4A 1GSJA 2J5TA 3LL9A 4USJA 4JZ8A 2AP9A 4NDQA 2IJ9A 1E19A 3EK6A 2BRXA 1OH9A 1Z9DA 3D41A 3AB4A 2R98A 2OGXB 2J4JA 3C1MA 4F6TB 2J0XA 2WE5A 3D2MA 2WXBA 2CDQA 3L86A 3QVHA 1OHAA 4NDPB 3WWMA 1B7BA 2BNFA 2BTYA 2AKOA 3B8GA 2JJXA 3AAWA 3D2PA 3LKKA 4Q1TA 4AXSA 4NDRA 3ZZFA 2J0WA 1GS5A 2BNDA 2R8VA 3S6KA 2OGXA 2JJ4A 4A7XA 4A7WA 3ZZHA 3ZZIA 3ZZGA 3T7BA 2W21A 3AB2A 4OLCA 3K56A 4NDPA 2BRIA 4I49A 3K4YA 3C20A 2VA1A 3QUNA 2RD5A 3QURA 4NDOB 2BMUA 2BUFA 2J4KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JZ9 A;  3U6U A;  4F6T A;  3QUO A;  2V5H A;  4JZ7 A;  3S6H A;  3S6G A;  1YBD A;  1OHB A;  2J4L A;  2X2W A;  4NDQ B;  3K4O A;  2HMF A;  2JI5 A;  3C1N A;  4NDO A;  3KZF A;  2V4Y A;  3NWY A;  4NDR B;  3K52 A;  2J5V A;  3QVF A;  3LL5 A;  3D40 A;  2E9Y A;  3TVI A;  2A1F A;  4KZT A;  3WWN A;  3L76 A;  2BNE A;  3EK5 A;  4AB7 A;  2WE4 A;  1GSJ A;  2J5T A;  3LL9 A;  4USJ A;  4JZ8 A;  2AP9 A;  4NDQ A;  2IJ9 A;  1E19 A;  3EK6 A;  2BRX A;  1OH9 A;  1Z9D A;  3D41 A;  3AB4 A;  2R98 A;  2OGX B;  2J4J A;  3C1M A;  4F6T B;  2J0X A;  2WE5 A;  3D2M A;  2WXB A;  2CDQ A;  3L86 A;  3QVH A;  1OHA A;  4NDP B;  3WWM A;  1B7B A;  2BNF A;  2BTY A;  2AKO A;  3B8G A;  2JJX A;  3AAW A;  3D2P A;  3LKK A;  4Q1T A;  4AXS A;  4NDR A;  3ZZF A;  2J0W A;  1GS5 A;  2BND A;  2R8V A;  3S6K A;  2OGX A;  2JJ4 A;  4A7X A;  4A7W A;  3ZZH A;  3ZZI A;  3ZZG A;  3T7B A;  2W21 A;  3AB2 A;  4OLC A;  3K56 A;  4NDP A;  2BRI A;  4I49 A;  3K4Y A;  3C20 A;  2VA1 A;  3QUN A;  2RD5 A;  3QUR A;  4NDO B;  2BMU A;  2BUF A;  2J4K A; 
#chains in the Genus database with same CATH topology
 4JZ9 A;  3U6U A;  4F6T A;  3QUO A;  2V5H A;  4JZ7 A;  3S6H A;  3S6G A;  1YBD A;  1OHB A;  2J4L A;  2X2W A;  4NDQ B;  3K4O A;  2HMF A;  2JI5 A;  3C1N A;  4NDO A;  3KZF A;  2V4Y A;  3NWY A;  4NDR B;  3K52 A;  2J5V A;  3QVF A;  3LL5 A;  3D40 A;  2E9Y A;  3TVI A;  2A1F A;  4KZT A;  3WWN A;  3L76 A;  2BNE A;  3EK5 A;  4AB7 A;  2WE4 A;  1GSJ A;  2J5T A;  3LL9 A;  4USJ A;  4JZ8 A;  2AP9 A;  4NDQ A;  2IJ9 A;  1E19 A;  3EK6 A;  2BRX A;  1OH9 A;  1Z9D A;  3D41 A;  3AB4 A;  2R98 A;  2OGX B;  2J4J A;  3C1M A;  4F6T B;  2J0X A;  2WE5 A;  3D2M A;  2WXB A;  2CDQ A;  3L86 A;  3QVH A;  1OHA A;  4NDP B;  3WWM A;  1B7B A;  2BNF A;  2BTY A;  2AKO A;  3B8G A;  2JJX A;  3AAW A;  3D2P A;  3LKK A;  4Q1T A;  4AXS A;  4NDR A;  3ZZF A;  2J0W A;  1GS5 A;  2BND A;  2R8V A;  3S6K A;  2OGX A;  2JJ4 A;  4A7X A;  4A7W A;  3ZZH A;  3ZZI A;  3ZZG A;  3T7B A;  2W21 A;  3AB2 A;  4OLC A;  3K56 A;  4NDP A;  2BRI A;  4I49 A;  3K4Y A;  3C20 A;  2VA1 A;  3QUN A;  2RD5 A;  3QUR A;  4NDO B;  2BMU A;  2BUF A;  2J4K A; 
#chains in the Genus database with same CATH homology
 4JZ9 A;  3U6U A;  4F6T A;  3QUO A;  2V5H A;  4JZ7 A;  3S6H A;  3S6G A;  1YBD A;  1OHB A;  2J4L A;  2X2W A;  4NDQ B;  3K4O A;  2HMF A;  2JI5 A;  3C1N A;  4NDO A;  3KZF A;  2V4Y A;  3NWY A;  4NDR B;  3K52 A;  2J5V A;  3QVF A;  3LL5 A;  3D40 A;  2E9Y A;  3TVI A;  2A1F A;  4KZT A;  3WWN A;  3L76 A;  2BNE A;  3EK5 A;  4AB7 A;  2WE4 A;  1GSJ A;  2J5T A;  3LL9 A;  4USJ A;  4JZ8 A;  2AP9 A;  4NDQ A;  2IJ9 A;  1E19 A;  3EK6 A;  2BRX A;  1OH9 A;  1Z9D A;  3D41 A;  3AB4 A;  2R98 A;  2OGX B;  2J4J A;  3C1M A;  4F6T B;  2J0X A;  2WE5 A;  3D2M A;  2WXB A;  2CDQ A;  3L86 A;  3QVH A;  1OHA A;  4NDP B;  3WWM A;  1B7B A;  2BNF A;  2BTY A;  2AKO A;  3B8G A;  2JJX A;  3AAW A;  3D2P A;  3LKK A;  4Q1T A;  4AXS A;  4NDR A;  3ZZF A;  2J0W A;  1GS5 A;  2BND A;  2R8V A;  3S6K A;  2OGX A;  2JJ4 A;  4A7X A;  4A7W A;  3ZZH A;  3ZZI A;  3ZZG A;  3T7B A;  2W21 A;  3AB2 A;  4OLC A;  3K56 A;  4NDP A;  2BRI A;  4I49 A;  3K4Y A;  3C20 A;  2VA1 A;  3QUN A;  2RD5 A;  3QUR A;  4NDO B;  2BMU A;  2BUF A;  2J4K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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