2RD5A

Structural basis for the regulation of n-acetylglutamate kinase by pii in arabidopsis thaliana
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
281
structure length
281
Chain Sequence
DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Acetylglutamate kinase-like protein
publication title Structural Basis for the Regulation of N-Acetylglutamate Kinase by PII in Arabidopsis thaliana.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 91
structure length 281
sequence length 281
chains with identical sequence B
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2rd5A00
3TVIA 3U6UA 2J0WA 3D2MA 4NDPB 4A7WA 4NDPA 3S6HA 3D40A 3S6GA 2J5VA 2BRXA 1OH9A 2JJ4A 3ZZHA 3QVFA 2JI5A 3ZZGA 2AP9A 2V4YA 1YBDA 3D41A 3C1NA 2WXBA 2BTYA 4USJA 4NDQB 4NDQA 4NDOB 4NDOA 1OHBA 4NDRB 4NDRA 3K4YA 3KZFA 4KZTA 3ZZIA 2JJXA 2BNDA 2BMUA 3QURA 4OLCA 1OHAA 3L86A 4JZ7A 1Z9DA 2R8VA 3K56A 3LL5A 2OGXB 2OGXA 4A7XA 2VA1A 1GSJA 3C1MA 4JZ8A 3K4OA 4AXSA 4Q1TA 3QUOA 2J4KA 3D2PA 3WWMA 2J5TA 3LKKA 2J4JA 4F6TB 2BNEA 4F6TA 3QVHA 3T7BA 2J0XA 2BUFA 3ZZFA 2CDQA 3LL9A 3AB2A 2IJ9A 3QUNA 3AB4A 2J4LA 3EK5A 2W21A 3L76A 2RD5A 2WE4A 2AKOA 2BRIA 4JZ9A 3C20A 2E9YA 2X2WA 3AAWA 3S6KA 3K52A 1B7BA 2R98A 2A1FA 1GS5A 4AB7A 3NWYA 2WE5A 4I49A 2V5HA 3EK6A 3WWNA 2HMFA 3B8GA 1E19A 2BNFA
chains in the Genus database with same CATH superfamily
3TVIA 3U6UA 2J0WA 3D2MA 4NDPB 4A7WA 4NDPA 3S6HA 3D40A 3S6GA 2J5VA 2BRXA 1OH9A 2JJ4A 3ZZHA 3QVFA 2JI5A 3ZZGA 2AP9A 2V4YA 1YBDA 3D41A 3C1NA 2WXBA 2BTYA 4USJA 4NDQB 4NDQA 4NDOB 4NDOA 1OHBA 4NDRB 4NDRA 3K4YA 3KZFA 4KZTA 3ZZIA 2JJXA 2BNDA 2BMUA 3QURA 4OLCA 1OHAA 3L86A 4JZ7A 1Z9DA 2R8VA 3K56A 3LL5A 2OGXB 2OGXA 4A7XA 2VA1A 1GSJA 3C1MA 4JZ8A 3K4OA 4AXSA 4Q1TA 3QUOA 2J4KA 3D2PA 3WWMA 2J5TA 3LKKA 2J4JA 4F6TB 2BNEA 4F6TA 3QVHA 3T7BA 2J0XA 2BUFA 3ZZFA 2CDQA 3LL9A 3AB2A 2IJ9A 3QUNA 3AB4A 2J4LA 3EK5A 2W21A 3L76A 2RD5A 2WE4A 2AKOA 2BRIA 4JZ9A 3C20A 2E9YA 2X2WA 3AAWA 3S6KA 3K52A 1B7BA 2R98A 2A1FA 1GS5A 4AB7A 3NWYA 2WE5A 4I49A 2V5HA 3EK6A 3WWNA 2HMFA 3B8GA 1E19A 2BNFA
chains in the Genus database with same CATH topology
3TVIA 3U6UA 2J0WA 3D2MA 4NDPB 4A7WA 4NDPA 3S6HA 3D40A 3S6GA 2J5VA 2BRXA 1OH9A 2JJ4A 3ZZHA 3QVFA 2JI5A 3ZZGA 2AP9A 2V4YA 1YBDA 3D41A 3C1NA 2WXBA 2BTYA 4USJA 4NDQB 4NDQA 4NDOB 4NDOA 1OHBA 4NDRB 4NDRA 3K4YA 3KZFA 4KZTA 3ZZIA 2JJXA 2BNDA 2BMUA 3QURA 4OLCA 1OHAA 3L86A 4JZ7A 1Z9DA 2R8VA 3K56A 3LL5A 2OGXB 2OGXA 4A7XA 2VA1A 1GSJA 3C1MA 4JZ8A 3K4OA 4AXSA 4Q1TA 3QUOA 2J4KA 3D2PA 3WWMA 2J5TA 3LKKA 2J4JA 4F6TB 2BNEA 4F6TA 3QVHA 3T7BA 2J0XA 2BUFA 3ZZFA 2CDQA 3LL9A 3AB2A 2IJ9A 3QUNA 3AB4A 2J4LA 3EK5A 2W21A 3L76A 2RD5A 2WE4A 2AKOA 2BRIA 4JZ9A 3C20A 2E9YA 2X2WA 3AAWA 3S6KA 3K52A 1B7BA 2R98A 2A1FA 1GS5A 4AB7A 3NWYA 2WE5A 4I49A 2V5HA 3EK6A 3WWNA 2HMFA 3B8GA 1E19A 2BNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TVI A;  3U6U A;  2J0W A;  3D2M A;  4NDP B;  4A7W A;  4NDP A;  3S6H A;  3D40 A;  3S6G A;  2J5V A;  2BRX A;  1OH9 A;  2JJ4 A;  3ZZH A;  3QVF A;  2JI5 A;  3ZZG A;  2AP9 A;  2V4Y A;  1YBD A;  3D41 A;  3C1N A;  2WXB A;  2BTY A;  4USJ A;  4NDQ B;  4NDQ A;  4NDO B;  4NDO A;  1OHB A;  4NDR B;  4NDR A;  3K4Y A;  3KZF A;  4KZT A;  3ZZI A;  2JJX A;  2BND A;  2BMU A;  3QUR A;  4OLC A;  1OHA A;  3L86 A;  4JZ7 A;  1Z9D A;  2R8V A;  3K56 A;  3LL5 A;  2OGX B;  2OGX A;  4A7X A;  2VA1 A;  1GSJ A;  3C1M A;  4JZ8 A;  3K4O A;  4AXS A;  4Q1T A;  3QUO A;  2J4K A;  3D2P A;  3WWM A;  2J5T A;  3LKK A;  2J4J A;  4F6T B;  2BNE A;  4F6T A;  3QVH A;  3T7B A;  2J0X A;  2BUF A;  3ZZF A;  2CDQ A;  3LL9 A;  3AB2 A;  2IJ9 A;  3QUN A;  3AB4 A;  2J4L A;  3EK5 A;  2W21 A;  3L76 A;  2RD5 A;  2WE4 A;  2AKO A;  2BRI A;  4JZ9 A;  3C20 A;  2E9Y A;  2X2W A;  3AAW A;  3S6K A;  3K52 A;  1B7B A;  2R98 A;  2A1F A;  1GS5 A;  4AB7 A;  3NWY A;  2WE5 A;  4I49 A;  2V5H A;  3EK6 A;  3WWN A;  2HMF A;  3B8G A;  1E19 A;  2BNF A; 
#chains in the Genus database with same CATH topology
 3TVI A;  3U6U A;  2J0W A;  3D2M A;  4NDP B;  4A7W A;  4NDP A;  3S6H A;  3D40 A;  3S6G A;  2J5V A;  2BRX A;  1OH9 A;  2JJ4 A;  3ZZH A;  3QVF A;  2JI5 A;  3ZZG A;  2AP9 A;  2V4Y A;  1YBD A;  3D41 A;  3C1N A;  2WXB A;  2BTY A;  4USJ A;  4NDQ B;  4NDQ A;  4NDO B;  4NDO A;  1OHB A;  4NDR B;  4NDR A;  3K4Y A;  3KZF A;  4KZT A;  3ZZI A;  2JJX A;  2BND A;  2BMU A;  3QUR A;  4OLC A;  1OHA A;  3L86 A;  4JZ7 A;  1Z9D A;  2R8V A;  3K56 A;  3LL5 A;  2OGX B;  2OGX A;  4A7X A;  2VA1 A;  1GSJ A;  3C1M A;  4JZ8 A;  3K4O A;  4AXS A;  4Q1T A;  3QUO A;  2J4K A;  3D2P A;  3WWM A;  2J5T A;  3LKK A;  2J4J A;  4F6T B;  2BNE A;  4F6T A;  3QVH A;  3T7B A;  2J0X A;  2BUF A;  3ZZF A;  2CDQ A;  3LL9 A;  3AB2 A;  2IJ9 A;  3QUN A;  3AB4 A;  2J4L A;  3EK5 A;  2W21 A;  3L76 A;  2RD5 A;  2WE4 A;  2AKO A;  2BRI A;  4JZ9 A;  3C20 A;  2E9Y A;  2X2W A;  3AAW A;  3S6K A;  3K52 A;  1B7B A;  2R98 A;  2A1F A;  1GS5 A;  4AB7 A;  3NWY A;  2WE5 A;  4I49 A;  2V5H A;  3EK6 A;  3WWN A;  2HMF A;  3B8G A;  1E19 A;  2BNF A; 
#chains in the Genus database with same CATH homology
 3TVI A;  3U6U A;  2J0W A;  3D2M A;  4NDP B;  4A7W A;  4NDP A;  3S6H A;  3D40 A;  3S6G A;  2J5V A;  2BRX A;  1OH9 A;  2JJ4 A;  3ZZH A;  3QVF A;  2JI5 A;  3ZZG A;  2AP9 A;  2V4Y A;  1YBD A;  3D41 A;  3C1N A;  2WXB A;  2BTY A;  4USJ A;  4NDQ B;  4NDQ A;  4NDO B;  4NDO A;  1OHB A;  4NDR B;  4NDR A;  3K4Y A;  3KZF A;  4KZT A;  3ZZI A;  2JJX A;  2BND A;  2BMU A;  3QUR A;  4OLC A;  1OHA A;  3L86 A;  4JZ7 A;  1Z9D A;  2R8V A;  3K56 A;  3LL5 A;  2OGX B;  2OGX A;  4A7X A;  2VA1 A;  1GSJ A;  3C1M A;  4JZ8 A;  3K4O A;  4AXS A;  4Q1T A;  3QUO A;  2J4K A;  3D2P A;  3WWM A;  2J5T A;  3LKK A;  2J4J A;  4F6T B;  2BNE A;  4F6T A;  3QVH A;  3T7B A;  2J0X A;  2BUF A;  3ZZF A;  2CDQ A;  3LL9 A;  3AB2 A;  2IJ9 A;  3QUN A;  3AB4 A;  2J4L A;  3EK5 A;  2W21 A;  3L76 A;  2RD5 A;  2WE4 A;  2AKO A;  2BRI A;  4JZ9 A;  3C20 A;  2E9Y A;  2X2W A;  3AAW A;  3S6K A;  3K52 A;  1B7B A;  2R98 A;  2A1F A;  1GS5 A;  4AB7 A;  3NWY A;  2WE5 A;  4I49 A;  2V5H A;  3EK6 A;  3WWN A;  2HMF A;  3B8G A;  1E19 A;  2BNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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