4USJA

N-acetylglutamate kinase from arabidopsis thaliana in complex with pii from chlamydomonas reinhardtii
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
281
structure length
281
Chain Sequence
DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Transferase
molecule keywords ACETYLGLUTAMATE KINASE, CHLOROPLASTIC
publication title A Widespread Glutamine-Sensing Mechanism in the Plant Kingdom.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 95
structure length 281
sequence length 281
chains with identical sequence B
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2014-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4usjA00
2V5HA 3U6UA 3B8GA 4OLCA 2W21A 3QURA 3WWMA 4JZ8A 2BNFA 4JZ9A 3TVIA 2JJ4A 2J5TA 4NDRB 3NWYA 3ZZGA 2R8VA 2IJ9A 3ZZFA 4A7XA 4NDPA 4NDOA 3S6GA 4F6TA 2BMUA 2J0XA 1B7BA 2J0WA 2WE5A 3ZZIA 1Z9DA 1E19A 4JZ7A 2BNEA 2AP9A 4AXSA 3KZFA 2AKOA 2BUFA 3QUOA 3D40A 1YBDA 3AB2A 4A7WA 4KZTA 3ZZHA 3LKKA 3QUNA 3EK6A 2BRIA 3C1NA 4Q1TA 3L76A 2OGXA 3AB4A 2V4YA 3D2PA 1OHBA 3C1MA 3D2MA 4NDQA 2JI5A 2VA1A 2X2WA 2RD5A 3T7BA 4NDPB 2J4JA 3LL9A 4NDOB 3L86A 4F6TB 2R98A 3K56A 2J4LA 3K4OA 2E9YA 3QVHA 3K52A 3C20A 2BRXA 2JJXA 2BTYA 3QVFA 2J5VA 3LL5A 2OGXB 1OHAA 2A1FA 1GSJA 4USJA 1GS5A 3EK5A 4NDRA 1OH9A 3S6HA 4NDQB 3S6KA 3WWNA 4AB7A 2WE4A 2CDQA 2J4KA 3AAWA 2HMFA 3K4YA 2BNDA 3D41A 4I49A 2WXBA
chains in the Genus database with same CATH superfamily
2V5HA 3U6UA 3B8GA 4OLCA 2W21A 3QURA 3WWMA 4JZ8A 2BNFA 4JZ9A 3TVIA 2JJ4A 2J5TA 4NDRB 3NWYA 3ZZGA 2R8VA 2IJ9A 3ZZFA 4A7XA 4NDPA 4NDOA 3S6GA 4F6TA 2BMUA 2J0XA 1B7BA 2J0WA 2WE5A 3ZZIA 1Z9DA 1E19A 4JZ7A 2BNEA 2AP9A 4AXSA 3KZFA 2AKOA 2BUFA 3QUOA 3D40A 1YBDA 3AB2A 4A7WA 4KZTA 3ZZHA 3LKKA 3QUNA 3EK6A 2BRIA 3C1NA 4Q1TA 3L76A 2OGXA 3AB4A 2V4YA 3D2PA 1OHBA 3C1MA 3D2MA 4NDQA 2JI5A 2VA1A 2X2WA 2RD5A 3T7BA 4NDPB 2J4JA 3LL9A 4NDOB 3L86A 4F6TB 2R98A 3K56A 2J4LA 3K4OA 2E9YA 3QVHA 3K52A 3C20A 2BRXA 2JJXA 2BTYA 3QVFA 2J5VA 3LL5A 2OGXB 1OHAA 2A1FA 1GSJA 4USJA 1GS5A 3EK5A 4NDRA 1OH9A 3S6HA 4NDQB 3S6KA 3WWNA 4AB7A 2WE4A 2CDQA 2J4KA 3AAWA 2HMFA 3K4YA 2BNDA 3D41A 4I49A 2WXBA
chains in the Genus database with same CATH topology
2V5HA 3U6UA 3B8GA 4OLCA 2W21A 3QURA 3WWMA 4JZ8A 2BNFA 4JZ9A 3TVIA 2JJ4A 2J5TA 4NDRB 3NWYA 3ZZGA 2R8VA 2IJ9A 3ZZFA 4A7XA 4NDPA 4NDOA 3S6GA 4F6TA 2BMUA 2J0XA 1B7BA 2J0WA 2WE5A 3ZZIA 1Z9DA 1E19A 4JZ7A 2BNEA 2AP9A 4AXSA 3KZFA 2AKOA 2BUFA 3QUOA 3D40A 1YBDA 3AB2A 4A7WA 4KZTA 3ZZHA 3LKKA 3QUNA 3EK6A 2BRIA 3C1NA 4Q1TA 3L76A 2OGXA 3AB4A 2V4YA 3D2PA 1OHBA 3C1MA 3D2MA 4NDQA 2JI5A 2VA1A 2X2WA 2RD5A 3T7BA 4NDPB 2J4JA 3LL9A 4NDOB 3L86A 4F6TB 2R98A 3K56A 2J4LA 3K4OA 2E9YA 3QVHA 3K52A 3C20A 2BRXA 2JJXA 2BTYA 3QVFA 2J5VA 3LL5A 2OGXB 1OHAA 2A1FA 1GSJA 4USJA 1GS5A 3EK5A 4NDRA 1OH9A 3S6HA 4NDQB 3S6KA 3WWNA 4AB7A 2WE4A 2CDQA 2J4KA 3AAWA 2HMFA 3K4YA 2BNDA 3D41A 4I49A 2WXBA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2V5H A;  3U6U A;  3B8G A;  4OLC A;  2W21 A;  3QUR A;  3WWM A;  4JZ8 A;  2BNF A;  4JZ9 A;  3TVI A;  2JJ4 A;  2J5T A;  4NDR B;  3NWY A;  3ZZG A;  2R8V A;  2IJ9 A;  3ZZF A;  4A7X A;  4NDP A;  4NDO A;  3S6G A;  4F6T A;  2BMU A;  2J0X A;  1B7B A;  2J0W A;  2WE5 A;  3ZZI A;  1Z9D A;  1E19 A;  4JZ7 A;  2BNE A;  2AP9 A;  4AXS A;  3KZF A;  2AKO A;  2BUF A;  3QUO A;  3D40 A;  1YBD A;  3AB2 A;  4A7W A;  4KZT A;  3ZZH A;  3LKK A;  3QUN A;  3EK6 A;  2BRI A;  3C1N A;  4Q1T A;  3L76 A;  2OGX A;  3AB4 A;  2V4Y A;  3D2P A;  1OHB A;  3C1M A;  3D2M A;  4NDQ A;  2JI5 A;  2VA1 A;  2X2W A;  2RD5 A;  3T7B A;  4NDP B;  2J4J A;  3LL9 A;  4NDO B;  3L86 A;  4F6T B;  2R98 A;  3K56 A;  2J4L A;  3K4O A;  2E9Y A;  3QVH A;  3K52 A;  3C20 A;  2BRX A;  2JJX A;  2BTY A;  3QVF A;  2J5V A;  3LL5 A;  2OGX B;  1OHA A;  2A1F A;  1GSJ A;  4USJ A;  1GS5 A;  3EK5 A;  4NDR A;  1OH9 A;  3S6H A;  4NDQ B;  3S6K A;  3WWN A;  4AB7 A;  2WE4 A;  2CDQ A;  2J4K A;  3AAW A;  2HMF A;  3K4Y A;  2BND A;  3D41 A;  4I49 A;  2WXB A; 
#chains in the Genus database with same CATH topology
 2V5H A;  3U6U A;  3B8G A;  4OLC A;  2W21 A;  3QUR A;  3WWM A;  4JZ8 A;  2BNF A;  4JZ9 A;  3TVI A;  2JJ4 A;  2J5T A;  4NDR B;  3NWY A;  3ZZG A;  2R8V A;  2IJ9 A;  3ZZF A;  4A7X A;  4NDP A;  4NDO A;  3S6G A;  4F6T A;  2BMU A;  2J0X A;  1B7B A;  2J0W A;  2WE5 A;  3ZZI A;  1Z9D A;  1E19 A;  4JZ7 A;  2BNE A;  2AP9 A;  4AXS A;  3KZF A;  2AKO A;  2BUF A;  3QUO A;  3D40 A;  1YBD A;  3AB2 A;  4A7W A;  4KZT A;  3ZZH A;  3LKK A;  3QUN A;  3EK6 A;  2BRI A;  3C1N A;  4Q1T A;  3L76 A;  2OGX A;  3AB4 A;  2V4Y A;  3D2P A;  1OHB A;  3C1M A;  3D2M A;  4NDQ A;  2JI5 A;  2VA1 A;  2X2W A;  2RD5 A;  3T7B A;  4NDP B;  2J4J A;  3LL9 A;  4NDO B;  3L86 A;  4F6T B;  2R98 A;  3K56 A;  2J4L A;  3K4O A;  2E9Y A;  3QVH A;  3K52 A;  3C20 A;  2BRX A;  2JJX A;  2BTY A;  3QVF A;  2J5V A;  3LL5 A;  2OGX B;  1OHA A;  2A1F A;  1GSJ A;  4USJ A;  1GS5 A;  3EK5 A;  4NDR A;  1OH9 A;  3S6H A;  4NDQ B;  3S6K A;  3WWN A;  4AB7 A;  2WE4 A;  2CDQ A;  2J4K A;  3AAW A;  2HMF A;  3K4Y A;  2BND A;  3D41 A;  4I49 A;  2WXB A; 
#chains in the Genus database with same CATH homology
 2V5H A;  3U6U A;  3B8G A;  4OLC A;  2W21 A;  3QUR A;  3WWM A;  4JZ8 A;  2BNF A;  4JZ9 A;  3TVI A;  2JJ4 A;  2J5T A;  4NDR B;  3NWY A;  3ZZG A;  2R8V A;  2IJ9 A;  3ZZF A;  4A7X A;  4NDP A;  4NDO A;  3S6G A;  4F6T A;  2BMU A;  2J0X A;  1B7B A;  2J0W A;  2WE5 A;  3ZZI A;  1Z9D A;  1E19 A;  4JZ7 A;  2BNE A;  2AP9 A;  4AXS A;  3KZF A;  2AKO A;  2BUF A;  3QUO A;  3D40 A;  1YBD A;  3AB2 A;  4A7W A;  4KZT A;  3ZZH A;  3LKK A;  3QUN A;  3EK6 A;  2BRI A;  3C1N A;  4Q1T A;  3L76 A;  2OGX A;  3AB4 A;  2V4Y A;  3D2P A;  1OHB A;  3C1M A;  3D2M A;  4NDQ A;  2JI5 A;  2VA1 A;  2X2W A;  2RD5 A;  3T7B A;  4NDP B;  2J4J A;  3LL9 A;  4NDO B;  3L86 A;  4F6T B;  2R98 A;  3K56 A;  2J4L A;  3K4O A;  2E9Y A;  3QVH A;  3K52 A;  3C20 A;  2BRX A;  2JJX A;  2BTY A;  3QVF A;  2J5V A;  3LL5 A;  2OGX B;  1OHA A;  2A1F A;  1GSJ A;  4USJ A;  1GS5 A;  3EK5 A;  4NDR A;  1OH9 A;  3S6H A;  4NDQ B;  3S6K A;  3WWN A;  4AB7 A;  2WE4 A;  2CDQ A;  2J4K A;  3AAW A;  2HMF A;  3K4Y A;  2BND A;  3D41 A;  4I49 A;  2WXB A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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