2BMUA

Ump kinase from pyrococcus furiosus complexed with its substrate ump and its substrate analog amppnp
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
225
structure length
225
Chain Sequence
MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title The Crystal Structure of Pyrococcus Furiosus Ump Kinase Provides Insight Into Catalysis and Regulation in Microbial Pyrimidine Nucleotide Biosynthesis.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 72
structure length 225
sequence length 225
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2bmuA00
2BRIA 3WWMA 4NDOA 3ZZFA 3K4YA 3L86A 1OH9A 3WWNA 1YBDA 3QURA 2J5TA 3ZZGA 2R98A 2JJ4A 2JJXA 2J0WA 3T7BA 2J0XA 3QUNA 2AKOA 2OGXB 2CDQA 3C1MA 2BMUA 4NDOB 3LL9A 4JZ7A 4JZ8A 4USJA 4KZTA 3S6KA 3AB2A 2WXBA 2BNEA 3ZZIA 1B7BA 3QUOA 4I49A 3K4OA 4NDPA 3LL5A 3D2PA 3QVHA 2HMFA 2IJ9A 2J4LA 2R8VA 3L76A 3U6UA 2BNFA 2E9YA 2VA1A 4A7XA 4JZ9A 4OLCA 4F6TA 3KZFA 3AB4A 4NDQA 1GSJA 1E19A 4NDRA 3K56A 1Z9DA 1OHBA 2BUFA 3NWYA 2WE4A 2JI5A 3EK5A 3S6GA 4A7WA 2BRXA 3QVFA 1GS5A 4NDPB 2AP9A 3EK6A 2X2WA 3C1NA 3AAWA 4F6TB 2A1FA 3S6HA 2V5HA 2V4YA 2J4KA 4NDQB 3TVIA 4Q1TA 4NDRB 2W21A 4AB7A 1OHAA 3B8GA 2RD5A 3LKKA 2BNDA 2WE5A 4AXSA 3K52A 3D41A 3D2MA 3C20A 3D40A 2BTYA 2OGXA 2J4JA 3ZZHA 2J5VA
chains in the Genus database with same CATH superfamily
2BRIA 3WWMA 4NDOA 3ZZFA 3K4YA 3L86A 1OH9A 3WWNA 1YBDA 3QURA 2J5TA 3ZZGA 2R98A 2JJ4A 2JJXA 2J0WA 3T7BA 2J0XA 3QUNA 2AKOA 2OGXB 2CDQA 3C1MA 2BMUA 4NDOB 3LL9A 4JZ7A 4JZ8A 4USJA 4KZTA 3S6KA 3AB2A 2WXBA 2BNEA 3ZZIA 1B7BA 3QUOA 4I49A 3K4OA 4NDPA 3LL5A 3D2PA 3QVHA 2HMFA 2IJ9A 2J4LA 2R8VA 3L76A 3U6UA 2BNFA 2E9YA 2VA1A 4A7XA 4JZ9A 4OLCA 4F6TA 3KZFA 3AB4A 4NDQA 1GSJA 1E19A 4NDRA 3K56A 1Z9DA 1OHBA 2BUFA 3NWYA 2WE4A 2JI5A 3EK5A 3S6GA 4A7WA 2BRXA 3QVFA 1GS5A 4NDPB 2AP9A 3EK6A 2X2WA 3C1NA 3AAWA 4F6TB 2A1FA 3S6HA 2V5HA 2V4YA 2J4KA 4NDQB 3TVIA 4Q1TA 4NDRB 2W21A 4AB7A 1OHAA 3B8GA 2RD5A 3LKKA 2BNDA 2WE5A 4AXSA 3K52A 3D41A 3D2MA 3C20A 3D40A 2BTYA 2OGXA 2J4JA 3ZZHA 2J5VA
chains in the Genus database with same CATH topology
2BRIA 3WWMA 4NDOA 3ZZFA 3K4YA 3L86A 1OH9A 3WWNA 1YBDA 3QURA 2J5TA 3ZZGA 2R98A 2JJ4A 2JJXA 2J0WA 3T7BA 2J0XA 3QUNA 2AKOA 2OGXB 2CDQA 3C1MA 2BMUA 4NDOB 3LL9A 4JZ7A 4JZ8A 4USJA 4KZTA 3S6KA 3AB2A 2WXBA 2BNEA 3ZZIA 1B7BA 3QUOA 4I49A 3K4OA 4NDPA 3LL5A 3D2PA 3QVHA 2HMFA 2IJ9A 2J4LA 2R8VA 3L76A 3U6UA 2BNFA 2E9YA 2VA1A 4A7XA 4JZ9A 4OLCA 4F6TA 3KZFA 3AB4A 4NDQA 1GSJA 1E19A 4NDRA 3K56A 1Z9DA 1OHBA 2BUFA 3NWYA 2WE4A 2JI5A 3EK5A 3S6GA 4A7WA 2BRXA 3QVFA 1GS5A 4NDPB 2AP9A 3EK6A 2X2WA 3C1NA 3AAWA 4F6TB 2A1FA 3S6HA 2V5HA 2V4YA 2J4KA 4NDQB 3TVIA 4Q1TA 4NDRB 2W21A 4AB7A 1OHAA 3B8GA 2RD5A 3LKKA 2BNDA 2WE5A 4AXSA 3K52A 3D41A 3D2MA 3C20A 3D40A 2BTYA 2OGXA 2J4JA 3ZZHA 2J5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BRI A;  3WWM A;  4NDO A;  3ZZF A;  3K4Y A;  3L86 A;  1OH9 A;  3WWN A;  1YBD A;  3QUR A;  2J5T A;  3ZZG A;  2R98 A;  2JJ4 A;  2JJX A;  2J0W A;  3T7B A;  2J0X A;  3QUN A;  2AKO A;  2OGX B;  2CDQ A;  3C1M A;  2BMU A;  4NDO B;  3LL9 A;  4JZ7 A;  4JZ8 A;  4USJ A;  4KZT A;  3S6K A;  3AB2 A;  2WXB A;  2BNE A;  3ZZI A;  1B7B A;  3QUO A;  4I49 A;  3K4O A;  4NDP A;  3LL5 A;  3D2P A;  3QVH A;  2HMF A;  2IJ9 A;  2J4L A;  2R8V A;  3L76 A;  3U6U A;  2BNF A;  2E9Y A;  2VA1 A;  4A7X A;  4JZ9 A;  4OLC A;  4F6T A;  3KZF A;  3AB4 A;  4NDQ A;  1GSJ A;  1E19 A;  4NDR A;  3K56 A;  1Z9D A;  1OHB A;  2BUF A;  3NWY A;  2WE4 A;  2JI5 A;  3EK5 A;  3S6G A;  4A7W A;  2BRX A;  3QVF A;  1GS5 A;  4NDP B;  2AP9 A;  3EK6 A;  2X2W A;  3C1N A;  3AAW A;  4F6T B;  2A1F A;  3S6H A;  2V5H A;  2V4Y A;  2J4K A;  4NDQ B;  3TVI A;  4Q1T A;  4NDR B;  2W21 A;  4AB7 A;  1OHA A;  3B8G A;  2RD5 A;  3LKK A;  2BND A;  2WE5 A;  4AXS A;  3K52 A;  3D41 A;  3D2M A;  3C20 A;  3D40 A;  2BTY A;  2OGX A;  2J4J A;  3ZZH A;  2J5V A; 
#chains in the Genus database with same CATH topology
 2BRI A;  3WWM A;  4NDO A;  3ZZF A;  3K4Y A;  3L86 A;  1OH9 A;  3WWN A;  1YBD A;  3QUR A;  2J5T A;  3ZZG A;  2R98 A;  2JJ4 A;  2JJX A;  2J0W A;  3T7B A;  2J0X A;  3QUN A;  2AKO A;  2OGX B;  2CDQ A;  3C1M A;  2BMU A;  4NDO B;  3LL9 A;  4JZ7 A;  4JZ8 A;  4USJ A;  4KZT A;  3S6K A;  3AB2 A;  2WXB A;  2BNE A;  3ZZI A;  1B7B A;  3QUO A;  4I49 A;  3K4O A;  4NDP A;  3LL5 A;  3D2P A;  3QVH A;  2HMF A;  2IJ9 A;  2J4L A;  2R8V A;  3L76 A;  3U6U A;  2BNF A;  2E9Y A;  2VA1 A;  4A7X A;  4JZ9 A;  4OLC A;  4F6T A;  3KZF A;  3AB4 A;  4NDQ A;  1GSJ A;  1E19 A;  4NDR A;  3K56 A;  1Z9D A;  1OHB A;  2BUF A;  3NWY A;  2WE4 A;  2JI5 A;  3EK5 A;  3S6G A;  4A7W A;  2BRX A;  3QVF A;  1GS5 A;  4NDP B;  2AP9 A;  3EK6 A;  2X2W A;  3C1N A;  3AAW A;  4F6T B;  2A1F A;  3S6H A;  2V5H A;  2V4Y A;  2J4K A;  4NDQ B;  3TVI A;  4Q1T A;  4NDR B;  2W21 A;  4AB7 A;  1OHA A;  3B8G A;  2RD5 A;  3LKK A;  2BND A;  2WE5 A;  4AXS A;  3K52 A;  3D41 A;  3D2M A;  3C20 A;  3D40 A;  2BTY A;  2OGX A;  2J4J A;  3ZZH A;  2J5V A; 
#chains in the Genus database with same CATH homology
 2BRI A;  3WWM A;  4NDO A;  3ZZF A;  3K4Y A;  3L86 A;  1OH9 A;  3WWN A;  1YBD A;  3QUR A;  2J5T A;  3ZZG A;  2R98 A;  2JJ4 A;  2JJX A;  2J0W A;  3T7B A;  2J0X A;  3QUN A;  2AKO A;  2OGX B;  2CDQ A;  3C1M A;  2BMU A;  4NDO B;  3LL9 A;  4JZ7 A;  4JZ8 A;  4USJ A;  4KZT A;  3S6K A;  3AB2 A;  2WXB A;  2BNE A;  3ZZI A;  1B7B A;  3QUO A;  4I49 A;  3K4O A;  4NDP A;  3LL5 A;  3D2P A;  3QVH A;  2HMF A;  2IJ9 A;  2J4L A;  2R8V A;  3L76 A;  3U6U A;  2BNF A;  2E9Y A;  2VA1 A;  4A7X A;  4JZ9 A;  4OLC A;  4F6T A;  3KZF A;  3AB4 A;  4NDQ A;  1GSJ A;  1E19 A;  4NDR A;  3K56 A;  1Z9D A;  1OHB A;  2BUF A;  3NWY A;  2WE4 A;  2JI5 A;  3EK5 A;  3S6G A;  4A7W A;  2BRX A;  3QVF A;  1GS5 A;  4NDP B;  2AP9 A;  3EK6 A;  2X2W A;  3C1N A;  3AAW A;  4F6T B;  2A1F A;  3S6H A;  2V5H A;  2V4Y A;  2J4K A;  4NDQ B;  3TVI A;  4Q1T A;  4NDR B;  2W21 A;  4AB7 A;  1OHA A;  3B8G A;  2RD5 A;  3LKK A;  2BND A;  2WE5 A;  4AXS A;  3K52 A;  3D41 A;  3D2M A;  3C20 A;  3D40 A;  2BTY A;  2OGX A;  2J4J A;  3ZZH A;  2J5V A; 
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similar chains in the pdb database (?% sequence similarity)

 
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