4JZ8A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 111
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz8A00
3WWMA 4JZ9A 2X2WA 3EK6A 2J4LA 3B8GA 3U6UA 4F6TB 2A1FA 2J4KA 2E9YA 4NDOB 2V4YA 4AXSA 1GS5A 3QURA 4AB7A 4NDRB 3S6HA 2BTYA 3AAWA 4JZ8A 2IJ9A 3K56A 3EK5A 2JJ4A 1Z9DA 2J0WA 3L86A 2AKOA 2R8VA 2J0XA 2WE5A 3C1MA 2BMUA 3WWNA 4A7WA 2W21A 3ZZHA 2BUFA 3ZZFA 4OLCA 3TVIA 3T7BA 2J4JA 2BNFA 3QVFA 2OGXA 3QUOA 4NDPA 2BRXA 2J5VA 1OHAA 4NDQA 3K52A 3AB4A 3LL5A 4F6TA 3ZZGA 3D41A 1GSJA 3K4YA 3S6KA 2OGXB 4NDPB 3QUNA 3NWYA 3D2MA 3L76A 3S6GA 4KZTA 4NDQB 2JJXA 2BNDA 2AP9A 2VA1A 3AB2A 4Q1TA 3ZZIA 2BRIA 3K4OA 3LKKA 3D2PA 3QVHA 2WE4A 3D40A 3C1NA 4A7XA 2JI5A 1B7BA 2CDQA 4JZ7A 2HMFA 3C20A 2V5HA 3KZFA 1OHBA 4NDOA 1E19A 2WXBA 2R98A 4USJA 2BNEA 1YBDA 4NDRA 1OH9A 3LL9A 2J5TA 4I49A 2RD5A
chains in the Genus database with same CATH superfamily
3WWMA 4JZ9A 2X2WA 3EK6A 2J4LA 3B8GA 3U6UA 4F6TB 2A1FA 2J4KA 2E9YA 4NDOB 2V4YA 4AXSA 1GS5A 3QURA 4AB7A 4NDRB 3S6HA 2BTYA 3AAWA 4JZ8A 2IJ9A 3K56A 3EK5A 2JJ4A 1Z9DA 2J0WA 3L86A 2AKOA 2R8VA 2J0XA 2WE5A 3C1MA 2BMUA 3WWNA 4A7WA 2W21A 3ZZHA 2BUFA 3ZZFA 4OLCA 3TVIA 3T7BA 2J4JA 2BNFA 3QVFA 2OGXA 3QUOA 4NDPA 2BRXA 2J5VA 1OHAA 4NDQA 3K52A 3AB4A 3LL5A 4F6TA 3ZZGA 3D41A 1GSJA 3K4YA 3S6KA 2OGXB 4NDPB 3QUNA 3NWYA 3D2MA 3L76A 3S6GA 4KZTA 4NDQB 2JJXA 2BNDA 2AP9A 2VA1A 3AB2A 4Q1TA 3ZZIA 2BRIA 3K4OA 3LKKA 3D2PA 3QVHA 2WE4A 3D40A 3C1NA 4A7XA 2JI5A 1B7BA 2CDQA 4JZ7A 2HMFA 3C20A 2V5HA 3KZFA 1OHBA 4NDOA 1E19A 2WXBA 2R98A 4USJA 2BNEA 1YBDA 4NDRA 1OH9A 3LL9A 2J5TA 4I49A 2RD5A
chains in the Genus database with same CATH topology
3WWMA 4JZ9A 2X2WA 3EK6A 2J4LA 3B8GA 3U6UA 4F6TB 2A1FA 2J4KA 2E9YA 4NDOB 2V4YA 4AXSA 1GS5A 3QURA 4AB7A 4NDRB 3S6HA 2BTYA 3AAWA 4JZ8A 2IJ9A 3K56A 3EK5A 2JJ4A 1Z9DA 2J0WA 3L86A 2AKOA 2R8VA 2J0XA 2WE5A 3C1MA 2BMUA 3WWNA 4A7WA 2W21A 3ZZHA 2BUFA 3ZZFA 4OLCA 3TVIA 3T7BA 2J4JA 2BNFA 3QVFA 2OGXA 3QUOA 4NDPA 2BRXA 2J5VA 1OHAA 4NDQA 3K52A 3AB4A 3LL5A 4F6TA 3ZZGA 3D41A 1GSJA 3K4YA 3S6KA 2OGXB 4NDPB 3QUNA 3NWYA 3D2MA 3L76A 3S6GA 4KZTA 4NDQB 2JJXA 2BNDA 2AP9A 2VA1A 3AB2A 4Q1TA 3ZZIA 2BRIA 3K4OA 3LKKA 3D2PA 3QVHA 2WE4A 3D40A 3C1NA 4A7XA 2JI5A 1B7BA 2CDQA 4JZ7A 2HMFA 3C20A 2V5HA 3KZFA 1OHBA 4NDOA 1E19A 2WXBA 2R98A 4USJA 2BNEA 1YBDA 4NDRA 1OH9A 3LL9A 2J5TA 4I49A 2RD5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WWM A;  4JZ9 A;  2X2W A;  3EK6 A;  2J4L A;  3B8G A;  3U6U A;  4F6T B;  2A1F A;  2J4K A;  2E9Y A;  4NDO B;  2V4Y A;  4AXS A;  1GS5 A;  3QUR A;  4AB7 A;  4NDR B;  3S6H A;  2BTY A;  3AAW A;  4JZ8 A;  2IJ9 A;  3K56 A;  3EK5 A;  2JJ4 A;  1Z9D A;  2J0W A;  3L86 A;  2AKO A;  2R8V A;  2J0X A;  2WE5 A;  3C1M A;  2BMU A;  3WWN A;  4A7W A;  2W21 A;  3ZZH A;  2BUF A;  3ZZF A;  4OLC A;  3TVI A;  3T7B A;  2J4J A;  2BNF A;  3QVF A;  2OGX A;  3QUO A;  4NDP A;  2BRX A;  2J5V A;  1OHA A;  4NDQ A;  3K52 A;  3AB4 A;  3LL5 A;  4F6T A;  3ZZG A;  3D41 A;  1GSJ A;  3K4Y A;  3S6K A;  2OGX B;  4NDP B;  3QUN A;  3NWY A;  3D2M A;  3L76 A;  3S6G A;  4KZT A;  4NDQ B;  2JJX A;  2BND A;  2AP9 A;  2VA1 A;  3AB2 A;  4Q1T A;  3ZZI A;  2BRI A;  3K4O A;  3LKK A;  3D2P A;  3QVH A;  2WE4 A;  3D40 A;  3C1N A;  4A7X A;  2JI5 A;  1B7B A;  2CDQ A;  4JZ7 A;  2HMF A;  3C20 A;  2V5H A;  3KZF A;  1OHB A;  4NDO A;  1E19 A;  2WXB A;  2R98 A;  4USJ A;  2BNE A;  1YBD A;  4NDR A;  1OH9 A;  3LL9 A;  2J5T A;  4I49 A;  2RD5 A; 
#chains in the Genus database with same CATH topology
 3WWM A;  4JZ9 A;  2X2W A;  3EK6 A;  2J4L A;  3B8G A;  3U6U A;  4F6T B;  2A1F A;  2J4K A;  2E9Y A;  4NDO B;  2V4Y A;  4AXS A;  1GS5 A;  3QUR A;  4AB7 A;  4NDR B;  3S6H A;  2BTY A;  3AAW A;  4JZ8 A;  2IJ9 A;  3K56 A;  3EK5 A;  2JJ4 A;  1Z9D A;  2J0W A;  3L86 A;  2AKO A;  2R8V A;  2J0X A;  2WE5 A;  3C1M A;  2BMU A;  3WWN A;  4A7W A;  2W21 A;  3ZZH A;  2BUF A;  3ZZF A;  4OLC A;  3TVI A;  3T7B A;  2J4J A;  2BNF A;  3QVF A;  2OGX A;  3QUO A;  4NDP A;  2BRX A;  2J5V A;  1OHA A;  4NDQ A;  3K52 A;  3AB4 A;  3LL5 A;  4F6T A;  3ZZG A;  3D41 A;  1GSJ A;  3K4Y A;  3S6K A;  2OGX B;  4NDP B;  3QUN A;  3NWY A;  3D2M A;  3L76 A;  3S6G A;  4KZT A;  4NDQ B;  2JJX A;  2BND A;  2AP9 A;  2VA1 A;  3AB2 A;  4Q1T A;  3ZZI A;  2BRI A;  3K4O A;  3LKK A;  3D2P A;  3QVH A;  2WE4 A;  3D40 A;  3C1N A;  4A7X A;  2JI5 A;  1B7B A;  2CDQ A;  4JZ7 A;  2HMF A;  3C20 A;  2V5H A;  3KZF A;  1OHB A;  4NDO A;  1E19 A;  2WXB A;  2R98 A;  4USJ A;  2BNE A;  1YBD A;  4NDR A;  1OH9 A;  3LL9 A;  2J5T A;  4I49 A;  2RD5 A; 
#chains in the Genus database with same CATH homology
 3WWM A;  4JZ9 A;  2X2W A;  3EK6 A;  2J4L A;  3B8G A;  3U6U A;  4F6T B;  2A1F A;  2J4K A;  2E9Y A;  4NDO B;  2V4Y A;  4AXS A;  1GS5 A;  3QUR A;  4AB7 A;  4NDR B;  3S6H A;  2BTY A;  3AAW A;  4JZ8 A;  2IJ9 A;  3K56 A;  3EK5 A;  2JJ4 A;  1Z9D A;  2J0W A;  3L86 A;  2AKO A;  2R8V A;  2J0X A;  2WE5 A;  3C1M A;  2BMU A;  3WWN A;  4A7W A;  2W21 A;  3ZZH A;  2BUF A;  3ZZF A;  4OLC A;  3TVI A;  3T7B A;  2J4J A;  2BNF A;  3QVF A;  2OGX A;  3QUO A;  4NDP A;  2BRX A;  2J5V A;  1OHA A;  4NDQ A;  3K52 A;  3AB4 A;  3LL5 A;  4F6T A;  3ZZG A;  3D41 A;  1GSJ A;  3K4Y A;  3S6K A;  2OGX B;  4NDP B;  3QUN A;  3NWY A;  3D2M A;  3L76 A;  3S6G A;  4KZT A;  4NDQ B;  2JJX A;  2BND A;  2AP9 A;  2VA1 A;  3AB2 A;  4Q1T A;  3ZZI A;  2BRI A;  3K4O A;  3LKK A;  3D2P A;  3QVH A;  2WE4 A;  3D40 A;  3C1N A;  4A7X A;  2JI5 A;  1B7B A;  2CDQ A;  4JZ7 A;  2HMF A;  3C20 A;  2V5H A;  3KZF A;  1OHB A;  4NDO A;  1E19 A;  2WXB A;  2R98 A;  4USJ A;  2BNE A;  1YBD A;  4NDR A;  1OH9 A;  3LL9 A;  2J5T A;  4I49 A;  2RD5 A; 
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