4JZ8A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Giardia lamblia
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
molecule keywords Carbamate kinase
total genus 111
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz8A00
2J5TA 4NDRB 3LL9A 2J4LA 1Z9DA 2A1FA 3D40A 2R8VA 2BRXA 2BTYA 3K4OA 1GSJA 3AAWA 3EK5A 2BMUA 3LKKA 2J4JA 3ZZHA 2BNEA 3D2MA 3WWMA 3S6HA 3D2PA 2X2WA 1OHAA 3AB2A 3AB4A 4JZ8A 3S6GA 2V4YA 4KZTA 3ZZIA 2J5VA 2BUFA 2WXBA 4NDOB 2JJXA 4F6TA 2J0WA 4I49A 3ZZFA 3TVIA 2J4KA 2WE5A 2VA1A 4A7WA 1E19A 2AKOA 2HMFA 3QVFA 4F6TB 3K4YA 1YBDA 3B8GA 3T7BA 4USJA 3K52A 3EK6A 2OGXA 4OLCA 4JZ9A 3QURA 2JJ4A 3C1NA 2JI5A 2R98A 1B7BA 4NDPA 3S6KA 2AP9A 2BNDA 3ZZGA 2RD5A 2E9YA 3NWYA 4NDQA 4AB7A 2WE4A 4NDRA 2BRIA 3K56A 3QUOA 2CDQA 3D41A 3KZFA 4JZ7A 1OH9A 3WWNA 4NDQB 3C20A 3L86A 3U6UA 2BNFA 1GS5A 2J0XA 1OHBA 4AXSA 4Q1TA 2OGXB 2W21A 3LL5A 4A7XA 2IJ9A 4NDOA 4NDPB 3QUNA 2V5HA 3C1MA 3QVHA 3L76A
chains in the Genus database with same CATH superfamily
2J5TA 4NDRB 3LL9A 2J4LA 1Z9DA 2A1FA 3D40A 2R8VA 2BRXA 2BTYA 3K4OA 1GSJA 3AAWA 3EK5A 2BMUA 3LKKA 2J4JA 3ZZHA 2BNEA 3D2MA 3WWMA 3S6HA 3D2PA 2X2WA 1OHAA 3AB2A 3AB4A 4JZ8A 3S6GA 2V4YA 4KZTA 3ZZIA 2J5VA 2BUFA 2WXBA 4NDOB 2JJXA 4F6TA 2J0WA 4I49A 3ZZFA 3TVIA 2J4KA 2WE5A 2VA1A 4A7WA 1E19A 2AKOA 2HMFA 3QVFA 4F6TB 3K4YA 1YBDA 3B8GA 3T7BA 4USJA 3K52A 3EK6A 2OGXA 4OLCA 4JZ9A 3QURA 2JJ4A 3C1NA 2JI5A 2R98A 1B7BA 4NDPA 3S6KA 2AP9A 2BNDA 3ZZGA 2RD5A 2E9YA 3NWYA 4NDQA 4AB7A 2WE4A 4NDRA 2BRIA 3K56A 3QUOA 2CDQA 3D41A 3KZFA 4JZ7A 1OH9A 3WWNA 4NDQB 3C20A 3L86A 3U6UA 2BNFA 1GS5A 2J0XA 1OHBA 4AXSA 4Q1TA 2OGXB 2W21A 3LL5A 4A7XA 2IJ9A 4NDOA 4NDPB 3QUNA 2V5HA 3C1MA 3QVHA 3L76A
chains in the Genus database with same CATH topology
2J5TA 4NDRB 3LL9A 2J4LA 1Z9DA 2A1FA 3D40A 2R8VA 2BRXA 2BTYA 3K4OA 1GSJA 3AAWA 3EK5A 2BMUA 3LKKA 2J4JA 3ZZHA 2BNEA 3D2MA 3WWMA 3S6HA 3D2PA 2X2WA 1OHAA 3AB2A 3AB4A 4JZ8A 3S6GA 2V4YA 4KZTA 3ZZIA 2J5VA 2BUFA 2WXBA 4NDOB 2JJXA 4F6TA 2J0WA 4I49A 3ZZFA 3TVIA 2J4KA 2WE5A 2VA1A 4A7WA 1E19A 2AKOA 2HMFA 3QVFA 4F6TB 3K4YA 1YBDA 3B8GA 3T7BA 4USJA 3K52A 3EK6A 2OGXA 4OLCA 4JZ9A 3QURA 2JJ4A 3C1NA 2JI5A 2R98A 1B7BA 4NDPA 3S6KA 2AP9A 2BNDA 3ZZGA 2RD5A 2E9YA 3NWYA 4NDQA 4AB7A 2WE4A 4NDRA 2BRIA 3K56A 3QUOA 2CDQA 3D41A 3KZFA 4JZ7A 1OH9A 3WWNA 4NDQB 3C20A 3L86A 3U6UA 2BNFA 1GS5A 2J0XA 1OHBA 4AXSA 4Q1TA 2OGXB 2W21A 3LL5A 4A7XA 2IJ9A 4NDOA 4NDPB 3QUNA 2V5HA 3C1MA 3QVHA 3L76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J5T A;  4NDR B;  3LL9 A;  2J4L A;  1Z9D A;  2A1F A;  3D40 A;  2R8V A;  2BRX A;  2BTY A;  3K4O A;  1GSJ A;  3AAW A;  3EK5 A;  2BMU A;  3LKK A;  2J4J A;  3ZZH A;  2BNE A;  3D2M A;  3WWM A;  3S6H A;  3D2P A;  2X2W A;  1OHA A;  3AB2 A;  3AB4 A;  4JZ8 A;  3S6G A;  2V4Y A;  4KZT A;  3ZZI A;  2J5V A;  2BUF A;  2WXB A;  4NDO B;  2JJX A;  4F6T A;  2J0W A;  4I49 A;  3ZZF A;  3TVI A;  2J4K A;  2WE5 A;  2VA1 A;  4A7W A;  1E19 A;  2AKO A;  2HMF A;  3QVF A;  4F6T B;  3K4Y A;  1YBD A;  3B8G A;  3T7B A;  4USJ A;  3K52 A;  3EK6 A;  2OGX A;  4OLC A;  4JZ9 A;  3QUR A;  2JJ4 A;  3C1N A;  2JI5 A;  2R98 A;  1B7B A;  4NDP A;  3S6K A;  2AP9 A;  2BND A;  3ZZG A;  2RD5 A;  2E9Y A;  3NWY A;  4NDQ A;  4AB7 A;  2WE4 A;  4NDR A;  2BRI A;  3K56 A;  3QUO A;  2CDQ A;  3D41 A;  3KZF A;  4JZ7 A;  1OH9 A;  3WWN A;  4NDQ B;  3C20 A;  3L86 A;  3U6U A;  2BNF A;  1GS5 A;  2J0X A;  1OHB A;  4AXS A;  4Q1T A;  2OGX B;  2W21 A;  3LL5 A;  4A7X A;  2IJ9 A;  4NDO A;  4NDP B;  3QUN A;  2V5H A;  3C1M A;  3QVH A;  3L76 A; 
#chains in the Genus database with same CATH topology
 2J5T A;  4NDR B;  3LL9 A;  2J4L A;  1Z9D A;  2A1F A;  3D40 A;  2R8V A;  2BRX A;  2BTY A;  3K4O A;  1GSJ A;  3AAW A;  3EK5 A;  2BMU A;  3LKK A;  2J4J A;  3ZZH A;  2BNE A;  3D2M A;  3WWM A;  3S6H A;  3D2P A;  2X2W A;  1OHA A;  3AB2 A;  3AB4 A;  4JZ8 A;  3S6G A;  2V4Y A;  4KZT A;  3ZZI A;  2J5V A;  2BUF A;  2WXB A;  4NDO B;  2JJX A;  4F6T A;  2J0W A;  4I49 A;  3ZZF A;  3TVI A;  2J4K A;  2WE5 A;  2VA1 A;  4A7W A;  1E19 A;  2AKO A;  2HMF A;  3QVF A;  4F6T B;  3K4Y A;  1YBD A;  3B8G A;  3T7B A;  4USJ A;  3K52 A;  3EK6 A;  2OGX A;  4OLC A;  4JZ9 A;  3QUR A;  2JJ4 A;  3C1N A;  2JI5 A;  2R98 A;  1B7B A;  4NDP A;  3S6K A;  2AP9 A;  2BND A;  3ZZG A;  2RD5 A;  2E9Y A;  3NWY A;  4NDQ A;  4AB7 A;  2WE4 A;  4NDR A;  2BRI A;  3K56 A;  3QUO A;  2CDQ A;  3D41 A;  3KZF A;  4JZ7 A;  1OH9 A;  3WWN A;  4NDQ B;  3C20 A;  3L86 A;  3U6U A;  2BNF A;  1GS5 A;  2J0X A;  1OHB A;  4AXS A;  4Q1T A;  2OGX B;  2W21 A;  3LL5 A;  4A7X A;  2IJ9 A;  4NDO A;  4NDP B;  3QUN A;  2V5H A;  3C1M A;  3QVH A;  3L76 A; 
#chains in the Genus database with same CATH homology
 2J5T A;  4NDR B;  3LL9 A;  2J4L A;  1Z9D A;  2A1F A;  3D40 A;  2R8V A;  2BRX A;  2BTY A;  3K4O A;  1GSJ A;  3AAW A;  3EK5 A;  2BMU A;  3LKK A;  2J4J A;  3ZZH A;  2BNE A;  3D2M A;  3WWM A;  3S6H A;  3D2P A;  2X2W A;  1OHA A;  3AB2 A;  3AB4 A;  4JZ8 A;  3S6G A;  2V4Y A;  4KZT A;  3ZZI A;  2J5V A;  2BUF A;  2WXB A;  4NDO B;  2JJX A;  4F6T A;  2J0W A;  4I49 A;  3ZZF A;  3TVI A;  2J4K A;  2WE5 A;  2VA1 A;  4A7W A;  1E19 A;  2AKO A;  2HMF A;  3QVF A;  4F6T B;  3K4Y A;  1YBD A;  3B8G A;  3T7B A;  4USJ A;  3K52 A;  3EK6 A;  2OGX A;  4OLC A;  4JZ9 A;  3QUR A;  2JJ4 A;  3C1N A;  2JI5 A;  2R98 A;  1B7B A;  4NDP A;  3S6K A;  2AP9 A;  2BND A;  3ZZG A;  2RD5 A;  2E9Y A;  3NWY A;  4NDQ A;  4AB7 A;  2WE4 A;  4NDR A;  2BRI A;  3K56 A;  3QUO A;  2CDQ A;  3D41 A;  3KZF A;  4JZ7 A;  1OH9 A;  3WWN A;  4NDQ B;  3C20 A;  3L86 A;  3U6U A;  2BNF A;  1GS5 A;  2J0X A;  1OHB A;  4AXS A;  4Q1T A;  2OGX B;  2W21 A;  3LL5 A;  4A7X A;  2IJ9 A;  4NDO A;  4NDP B;  3QUN A;  2V5H A;  3C1M A;  3QVH A;  3L76 A; 
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