4JZ8A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 111
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz8A00
2OGXB 3WWNA 3AB2A 3ZZHA 3EK6A 2BUFA 1OH9A 3QUOA 3ZZGA 2RD5A 3C1MA 3S6HA 2WE4A 2WXBA 2J5VA 4NDOA 2J0XA 4JZ8A 4F6TB 3S6KA 1B7BA 3LL5A 2BRXA 2JI5A 2WE5A 2V4YA 2BTYA 4I49A 3U6UA 1GSJA 3AB4A 4NDRA 4AB7A 4JZ7A 3L76A 3D2MA 2BRIA 2X2WA 3ZZIA 4NDQB 3QVFA 1Z9DA 3S6GA 3L86A 3EK5A 4NDPB 3QUNA 2J4LA 4AXSA 3K52A 4OLCA 1OHBA 3WWMA 3D40A 3LKKA 2OGXA 2CDQA 4KZTA 2HMFA 3ZZFA 2A1FA 3QURA 3K56A 3LL9A 4Q1TA 4USJA 3B8GA 2BNDA 4JZ9A 4NDOB 1YBDA 2J4JA 2VA1A 4F6TA 4A7XA 3D2PA 3K4YA 2AP9A 1OHAA 4NDRB 2JJXA 2JJ4A 3C20A 2J4KA 2J5TA 2R98A 2W21A 4NDQA 4A7WA 3D41A 3QVHA 3T7BA 2R8VA 3C1NA 3KZFA 1GS5A 2E9YA 3AAWA 4NDPA 2IJ9A 2BMUA 1E19A 3TVIA 2V5HA 2BNFA 2AKOA 2BNEA 2J0WA 3K4OA 3NWYA
chains in the Genus database with same CATH superfamily
2OGXB 3WWNA 3AB2A 3ZZHA 3EK6A 2BUFA 1OH9A 3QUOA 3ZZGA 2RD5A 3C1MA 3S6HA 2WE4A 2WXBA 2J5VA 4NDOA 2J0XA 4JZ8A 4F6TB 3S6KA 1B7BA 3LL5A 2BRXA 2JI5A 2WE5A 2V4YA 2BTYA 4I49A 3U6UA 1GSJA 3AB4A 4NDRA 4AB7A 4JZ7A 3L76A 3D2MA 2BRIA 2X2WA 3ZZIA 4NDQB 3QVFA 1Z9DA 3S6GA 3L86A 3EK5A 4NDPB 3QUNA 2J4LA 4AXSA 3K52A 4OLCA 1OHBA 3WWMA 3D40A 3LKKA 2OGXA 2CDQA 4KZTA 2HMFA 3ZZFA 2A1FA 3QURA 3K56A 3LL9A 4Q1TA 4USJA 3B8GA 2BNDA 4JZ9A 4NDOB 1YBDA 2J4JA 2VA1A 4F6TA 4A7XA 3D2PA 3K4YA 2AP9A 1OHAA 4NDRB 2JJXA 2JJ4A 3C20A 2J4KA 2J5TA 2R98A 2W21A 4NDQA 4A7WA 3D41A 3QVHA 3T7BA 2R8VA 3C1NA 3KZFA 1GS5A 2E9YA 3AAWA 4NDPA 2IJ9A 2BMUA 1E19A 3TVIA 2V5HA 2BNFA 2AKOA 2BNEA 2J0WA 3K4OA 3NWYA
chains in the Genus database with same CATH topology
2OGXB 3WWNA 3AB2A 3ZZHA 3EK6A 2BUFA 1OH9A 3QUOA 3ZZGA 2RD5A 3C1MA 3S6HA 2WE4A 2WXBA 2J5VA 4NDOA 2J0XA 4JZ8A 4F6TB 3S6KA 1B7BA 3LL5A 2BRXA 2JI5A 2WE5A 2V4YA 2BTYA 4I49A 3U6UA 1GSJA 3AB4A 4NDRA 4AB7A 4JZ7A 3L76A 3D2MA 2BRIA 2X2WA 3ZZIA 4NDQB 3QVFA 1Z9DA 3S6GA 3L86A 3EK5A 4NDPB 3QUNA 2J4LA 4AXSA 3K52A 4OLCA 1OHBA 3WWMA 3D40A 3LKKA 2OGXA 2CDQA 4KZTA 2HMFA 3ZZFA 2A1FA 3QURA 3K56A 3LL9A 4Q1TA 4USJA 3B8GA 2BNDA 4JZ9A 4NDOB 1YBDA 2J4JA 2VA1A 4F6TA 4A7XA 3D2PA 3K4YA 2AP9A 1OHAA 4NDRB 2JJXA 2JJ4A 3C20A 2J4KA 2J5TA 2R98A 2W21A 4NDQA 4A7WA 3D41A 3QVHA 3T7BA 2R8VA 3C1NA 3KZFA 1GS5A 2E9YA 3AAWA 4NDPA 2IJ9A 2BMUA 1E19A 3TVIA 2V5HA 2BNFA 2AKOA 2BNEA 2J0WA 3K4OA 3NWYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OGX B;  3WWN A;  3AB2 A;  3ZZH A;  3EK6 A;  2BUF A;  1OH9 A;  3QUO A;  3ZZG A;  2RD5 A;  3C1M A;  3S6H A;  2WE4 A;  2WXB A;  2J5V A;  4NDO A;  2J0X A;  4JZ8 A;  4F6T B;  3S6K A;  1B7B A;  3LL5 A;  2BRX A;  2JI5 A;  2WE5 A;  2V4Y A;  2BTY A;  4I49 A;  3U6U A;  1GSJ A;  3AB4 A;  4NDR A;  4AB7 A;  4JZ7 A;  3L76 A;  3D2M A;  2BRI A;  2X2W A;  3ZZI A;  4NDQ B;  3QVF A;  1Z9D A;  3S6G A;  3L86 A;  3EK5 A;  4NDP B;  3QUN A;  2J4L A;  4AXS A;  3K52 A;  4OLC A;  1OHB A;  3WWM A;  3D40 A;  3LKK A;  2OGX A;  2CDQ A;  4KZT A;  2HMF A;  3ZZF A;  2A1F A;  3QUR A;  3K56 A;  3LL9 A;  4Q1T A;  4USJ A;  3B8G A;  2BND A;  4JZ9 A;  4NDO B;  1YBD A;  2J4J A;  2VA1 A;  4F6T A;  4A7X A;  3D2P A;  3K4Y A;  2AP9 A;  1OHA A;  4NDR B;  2JJX A;  2JJ4 A;  3C20 A;  2J4K A;  2J5T A;  2R98 A;  2W21 A;  4NDQ A;  4A7W A;  3D41 A;  3QVH A;  3T7B A;  2R8V A;  3C1N A;  3KZF A;  1GS5 A;  2E9Y A;  3AAW A;  4NDP A;  2IJ9 A;  2BMU A;  1E19 A;  3TVI A;  2V5H A;  2BNF A;  2AKO A;  2BNE A;  2J0W A;  3K4O A;  3NWY A; 
#chains in the Genus database with same CATH topology
 2OGX B;  3WWN A;  3AB2 A;  3ZZH A;  3EK6 A;  2BUF A;  1OH9 A;  3QUO A;  3ZZG A;  2RD5 A;  3C1M A;  3S6H A;  2WE4 A;  2WXB A;  2J5V A;  4NDO A;  2J0X A;  4JZ8 A;  4F6T B;  3S6K A;  1B7B A;  3LL5 A;  2BRX A;  2JI5 A;  2WE5 A;  2V4Y A;  2BTY A;  4I49 A;  3U6U A;  1GSJ A;  3AB4 A;  4NDR A;  4AB7 A;  4JZ7 A;  3L76 A;  3D2M A;  2BRI A;  2X2W A;  3ZZI A;  4NDQ B;  3QVF A;  1Z9D A;  3S6G A;  3L86 A;  3EK5 A;  4NDP B;  3QUN A;  2J4L A;  4AXS A;  3K52 A;  4OLC A;  1OHB A;  3WWM A;  3D40 A;  3LKK A;  2OGX A;  2CDQ A;  4KZT A;  2HMF A;  3ZZF A;  2A1F A;  3QUR A;  3K56 A;  3LL9 A;  4Q1T A;  4USJ A;  3B8G A;  2BND A;  4JZ9 A;  4NDO B;  1YBD A;  2J4J A;  2VA1 A;  4F6T A;  4A7X A;  3D2P A;  3K4Y A;  2AP9 A;  1OHA A;  4NDR B;  2JJX A;  2JJ4 A;  3C20 A;  2J4K A;  2J5T A;  2R98 A;  2W21 A;  4NDQ A;  4A7W A;  3D41 A;  3QVH A;  3T7B A;  2R8V A;  3C1N A;  3KZF A;  1GS5 A;  2E9Y A;  3AAW A;  4NDP A;  2IJ9 A;  2BMU A;  1E19 A;  3TVI A;  2V5H A;  2BNF A;  2AKO A;  2BNE A;  2J0W A;  3K4O A;  3NWY A; 
#chains in the Genus database with same CATH homology
 2OGX B;  3WWN A;  3AB2 A;  3ZZH A;  3EK6 A;  2BUF A;  1OH9 A;  3QUO A;  3ZZG A;  2RD5 A;  3C1M A;  3S6H A;  2WE4 A;  2WXB A;  2J5V A;  4NDO A;  2J0X A;  4JZ8 A;  4F6T B;  3S6K A;  1B7B A;  3LL5 A;  2BRX A;  2JI5 A;  2WE5 A;  2V4Y A;  2BTY A;  4I49 A;  3U6U A;  1GSJ A;  3AB4 A;  4NDR A;  4AB7 A;  4JZ7 A;  3L76 A;  3D2M A;  2BRI A;  2X2W A;  3ZZI A;  4NDQ B;  3QVF A;  1Z9D A;  3S6G A;  3L86 A;  3EK5 A;  4NDP B;  3QUN A;  2J4L A;  4AXS A;  3K52 A;  4OLC A;  1OHB A;  3WWM A;  3D40 A;  3LKK A;  2OGX A;  2CDQ A;  4KZT A;  2HMF A;  3ZZF A;  2A1F A;  3QUR A;  3K56 A;  3LL9 A;  4Q1T A;  4USJ A;  3B8G A;  2BND A;  4JZ9 A;  4NDO B;  1YBD A;  2J4J A;  2VA1 A;  4F6T A;  4A7X A;  3D2P A;  3K4Y A;  2AP9 A;  1OHA A;  4NDR B;  2JJX A;  2JJ4 A;  3C20 A;  2J4K A;  2J5T A;  2R98 A;  2W21 A;  4NDQ A;  4A7W A;  3D41 A;  3QVH A;  3T7B A;  2R8V A;  3C1N A;  3KZF A;  1GS5 A;  2E9Y A;  3AAW A;  4NDP A;  2IJ9 A;  2BMU A;  1E19 A;  3TVI A;  2V5H A;  2BNF A;  2AKO A;  2BNE A;  2J0W A;  3K4O A;  3NWY A; 
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