4JZ8A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
total genus 111
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz8A00
3ZZIA 3AB4A 3LKKA 2V4YA 2WE4A 1OHBA 2J5VA 1E19A 4NDRB 4USJA 2BNFA 3TVIA 2R98A 3K4YA 2E9YA 3S6KA 4Q1TA 4AXSA 1GS5A 2J4LA 4AB7A 3WWNA 4KZTA 3QUOA 3LL5A 3ZZHA 2BNEA 2RD5A 3K52A 2WE5A 3QUNA 4NDQA 4I49A 3D40A 2JJXA 2IJ9A 2A1FA 2AKOA 3ZZGA 4NDQB 3K4OA 4NDRA 2BRIA 1OH9A 3L76A 4A7WA 2J0XA 3EK6A 3WWMA 4F6TB 2R8VA 3ZZFA 4A7XA 2BTYA 4OLCA 2J0WA 4NDOB 3L86A 4NDPB 3EK5A 3S6GA 1OHAA 3AB2A 2OGXB 3K56A 2HMFA 3D41A 2BUFA 3C1NA 3D2PA 2CDQA 2J4JA 2X2WA 3NWYA 2W21A 4F6TA 3AAWA 2J4KA 2VA1A 1Z9DA 2AP9A 4NDOA 4NDPA 3B8GA 2OGXA 3QURA 3QVHA 1B7BA 3C1MA 2BNDA 3U6UA 2J5TA 2BMUA 3S6HA 1YBDA 1GSJA 3LL9A 4JZ8A 3QVFA 3C20A 3T7BA 2V5HA 3KZFA 2JJ4A 4JZ7A 4JZ9A 2JI5A 2WXBA 3D2MA 2BRXA
chains in the Genus database with same CATH superfamily
3ZZIA 3AB4A 3LKKA 2V4YA 2WE4A 1OHBA 2J5VA 1E19A 4NDRB 4USJA 2BNFA 3TVIA 2R98A 3K4YA 2E9YA 3S6KA 4Q1TA 4AXSA 1GS5A 2J4LA 4AB7A 3WWNA 4KZTA 3QUOA 3LL5A 3ZZHA 2BNEA 2RD5A 3K52A 2WE5A 3QUNA 4NDQA 4I49A 3D40A 2JJXA 2IJ9A 2A1FA 2AKOA 3ZZGA 4NDQB 3K4OA 4NDRA 2BRIA 1OH9A 3L76A 4A7WA 2J0XA 3EK6A 3WWMA 4F6TB 2R8VA 3ZZFA 4A7XA 2BTYA 4OLCA 2J0WA 4NDOB 3L86A 4NDPB 3EK5A 3S6GA 1OHAA 3AB2A 2OGXB 3K56A 2HMFA 3D41A 2BUFA 3C1NA 3D2PA 2CDQA 2J4JA 2X2WA 3NWYA 2W21A 4F6TA 3AAWA 2J4KA 2VA1A 1Z9DA 2AP9A 4NDOA 4NDPA 3B8GA 2OGXA 3QURA 3QVHA 1B7BA 3C1MA 2BNDA 3U6UA 2J5TA 2BMUA 3S6HA 1YBDA 1GSJA 3LL9A 4JZ8A 3QVFA 3C20A 3T7BA 2V5HA 3KZFA 2JJ4A 4JZ7A 4JZ9A 2JI5A 2WXBA 3D2MA 2BRXA
chains in the Genus database with same CATH topology
3ZZIA 3AB4A 3LKKA 2V4YA 2WE4A 1OHBA 2J5VA 1E19A 4NDRB 4USJA 2BNFA 3TVIA 2R98A 3K4YA 2E9YA 3S6KA 4Q1TA 4AXSA 1GS5A 2J4LA 4AB7A 3WWNA 4KZTA 3QUOA 3LL5A 3ZZHA 2BNEA 2RD5A 3K52A 2WE5A 3QUNA 4NDQA 4I49A 3D40A 2JJXA 2IJ9A 2A1FA 2AKOA 3ZZGA 4NDQB 3K4OA 4NDRA 2BRIA 1OH9A 3L76A 4A7WA 2J0XA 3EK6A 3WWMA 4F6TB 2R8VA 3ZZFA 4A7XA 2BTYA 4OLCA 2J0WA 4NDOB 3L86A 4NDPB 3EK5A 3S6GA 1OHAA 3AB2A 2OGXB 3K56A 2HMFA 3D41A 2BUFA 3C1NA 3D2PA 2CDQA 2J4JA 2X2WA 3NWYA 2W21A 4F6TA 3AAWA 2J4KA 2VA1A 1Z9DA 2AP9A 4NDOA 4NDPA 3B8GA 2OGXA 3QURA 3QVHA 1B7BA 3C1MA 2BNDA 3U6UA 2J5TA 2BMUA 3S6HA 1YBDA 1GSJA 3LL9A 4JZ8A 3QVFA 3C20A 3T7BA 2V5HA 3KZFA 2JJ4A 4JZ7A 4JZ9A 2JI5A 2WXBA 3D2MA 2BRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZZI A;  3AB4 A;  3LKK A;  2V4Y A;  2WE4 A;  1OHB A;  2J5V A;  1E19 A;  4NDR B;  4USJ A;  2BNF A;  3TVI A;  2R98 A;  3K4Y A;  2E9Y A;  3S6K A;  4Q1T A;  4AXS A;  1GS5 A;  2J4L A;  4AB7 A;  3WWN A;  4KZT A;  3QUO A;  3LL5 A;  3ZZH A;  2BNE A;  2RD5 A;  3K52 A;  2WE5 A;  3QUN A;  4NDQ A;  4I49 A;  3D40 A;  2JJX A;  2IJ9 A;  2A1F A;  2AKO A;  3ZZG A;  4NDQ B;  3K4O A;  4NDR A;  2BRI A;  1OH9 A;  3L76 A;  4A7W A;  2J0X A;  3EK6 A;  3WWM A;  4F6T B;  2R8V A;  3ZZF A;  4A7X A;  2BTY A;  4OLC A;  2J0W A;  4NDO B;  3L86 A;  4NDP B;  3EK5 A;  3S6G A;  1OHA A;  3AB2 A;  2OGX B;  3K56 A;  2HMF A;  3D41 A;  2BUF A;  3C1N A;  3D2P A;  2CDQ A;  2J4J A;  2X2W A;  3NWY A;  2W21 A;  4F6T A;  3AAW A;  2J4K A;  2VA1 A;  1Z9D A;  2AP9 A;  4NDO A;  4NDP A;  3B8G A;  2OGX A;  3QUR A;  3QVH A;  1B7B A;  3C1M A;  2BND A;  3U6U A;  2J5T A;  2BMU A;  3S6H A;  1YBD A;  1GSJ A;  3LL9 A;  4JZ8 A;  3QVF A;  3C20 A;  3T7B A;  2V5H A;  3KZF A;  2JJ4 A;  4JZ7 A;  4JZ9 A;  2JI5 A;  2WXB A;  3D2M A;  2BRX A; 
#chains in the Genus database with same CATH topology
 3ZZI A;  3AB4 A;  3LKK A;  2V4Y A;  2WE4 A;  1OHB A;  2J5V A;  1E19 A;  4NDR B;  4USJ A;  2BNF A;  3TVI A;  2R98 A;  3K4Y A;  2E9Y A;  3S6K A;  4Q1T A;  4AXS A;  1GS5 A;  2J4L A;  4AB7 A;  3WWN A;  4KZT A;  3QUO A;  3LL5 A;  3ZZH A;  2BNE A;  2RD5 A;  3K52 A;  2WE5 A;  3QUN A;  4NDQ A;  4I49 A;  3D40 A;  2JJX A;  2IJ9 A;  2A1F A;  2AKO A;  3ZZG A;  4NDQ B;  3K4O A;  4NDR A;  2BRI A;  1OH9 A;  3L76 A;  4A7W A;  2J0X A;  3EK6 A;  3WWM A;  4F6T B;  2R8V A;  3ZZF A;  4A7X A;  2BTY A;  4OLC A;  2J0W A;  4NDO B;  3L86 A;  4NDP B;  3EK5 A;  3S6G A;  1OHA A;  3AB2 A;  2OGX B;  3K56 A;  2HMF A;  3D41 A;  2BUF A;  3C1N A;  3D2P A;  2CDQ A;  2J4J A;  2X2W A;  3NWY A;  2W21 A;  4F6T A;  3AAW A;  2J4K A;  2VA1 A;  1Z9D A;  2AP9 A;  4NDO A;  4NDP A;  3B8G A;  2OGX A;  3QUR A;  3QVH A;  1B7B A;  3C1M A;  2BND A;  3U6U A;  2J5T A;  2BMU A;  3S6H A;  1YBD A;  1GSJ A;  3LL9 A;  4JZ8 A;  3QVF A;  3C20 A;  3T7B A;  2V5H A;  3KZF A;  2JJ4 A;  4JZ7 A;  4JZ9 A;  2JI5 A;  2WXB A;  3D2M A;  2BRX A; 
#chains in the Genus database with same CATH homology
 3ZZI A;  3AB4 A;  3LKK A;  2V4Y A;  2WE4 A;  1OHB A;  2J5V A;  1E19 A;  4NDR B;  4USJ A;  2BNF A;  3TVI A;  2R98 A;  3K4Y A;  2E9Y A;  3S6K A;  4Q1T A;  4AXS A;  1GS5 A;  2J4L A;  4AB7 A;  3WWN A;  4KZT A;  3QUO A;  3LL5 A;  3ZZH A;  2BNE A;  2RD5 A;  3K52 A;  2WE5 A;  3QUN A;  4NDQ A;  4I49 A;  3D40 A;  2JJX A;  2IJ9 A;  2A1F A;  2AKO A;  3ZZG A;  4NDQ B;  3K4O A;  4NDR A;  2BRI A;  1OH9 A;  3L76 A;  4A7W A;  2J0X A;  3EK6 A;  3WWM A;  4F6T B;  2R8V A;  3ZZF A;  4A7X A;  2BTY A;  4OLC A;  2J0W A;  4NDO B;  3L86 A;  4NDP B;  3EK5 A;  3S6G A;  1OHA A;  3AB2 A;  2OGX B;  3K56 A;  2HMF A;  3D41 A;  2BUF A;  3C1N A;  3D2P A;  2CDQ A;  2J4J A;  2X2W A;  3NWY A;  2W21 A;  4F6T A;  3AAW A;  2J4K A;  2VA1 A;  1Z9D A;  2AP9 A;  4NDO A;  4NDP A;  3B8G A;  2OGX A;  3QUR A;  3QVH A;  1B7B A;  3C1M A;  2BND A;  3U6U A;  2J5T A;  2BMU A;  3S6H A;  1YBD A;  1GSJ A;  3LL9 A;  4JZ8 A;  3QVF A;  3C20 A;  3T7B A;  2V5H A;  3KZF A;  2JJ4 A;  4JZ7 A;  4JZ9 A;  2JI5 A;  2WXB A;  3D2M A;  2BRX A; 
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