4JZ8A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
molecule keywords Carbamate kinase
total genus 111
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz8A00
2V4YA 4NDRB 1B7BA 2JI5A 2WE5A 3C20A 4NDPB 3AB2A 4Q1TA 4OLCA 1OH9A 3WWMA 2BNFA 3ZZFA 3B8GA 2WXBA 3EK6A 3S6HA 2OGXA 4NDQB 1E19A 3C1MA 3NWYA 4NDOA 2J4KA 4F6TA 4JZ9A 3EK5A 2BUFA 2J0XA 3S6GA 1GS5A 3K52A 3L86A 3K56A 2E9YA 3QUNA 4A7XA 2BTYA 2VA1A 2J5TA 3LKKA 2J5VA 4KZTA 3QVFA 2BMUA 2W21A 1OHBA 2J4LA 3TVIA 3D41A 3WWNA 3K4YA 3LL9A 1GSJA 4F6TB 3QVHA 4USJA 3QUOA 2RD5A 2CDQA 4AB7A 2OGXB 3C1NA 1Z9DA 1OHAA 3D40A 2BRIA 3K4OA 1YBDA 3T7BA 2R98A 4A7WA 2V5HA 2J0WA 2R8VA 2AP9A 4NDPA 2BNEA 4JZ7A 2X2WA 3ZZIA 2J4JA 2A1FA 2JJXA 3L76A 3AB4A 2HMFA 4NDQA 3D2MA 3KZFA 3AAWA 3ZZHA 2AKOA 2BNDA 4I49A 3ZZGA 4NDOB 2IJ9A 2JJ4A 2BRXA 3LL5A 3D2PA 4JZ8A 4AXSA 4NDRA 3S6KA 3U6UA 3QURA 2WE4A
chains in the Genus database with same CATH superfamily
2V4YA 4NDRB 1B7BA 2JI5A 2WE5A 3C20A 4NDPB 3AB2A 4Q1TA 4OLCA 1OH9A 3WWMA 2BNFA 3ZZFA 3B8GA 2WXBA 3EK6A 3S6HA 2OGXA 4NDQB 1E19A 3C1MA 3NWYA 4NDOA 2J4KA 4F6TA 4JZ9A 3EK5A 2BUFA 2J0XA 3S6GA 1GS5A 3K52A 3L86A 3K56A 2E9YA 3QUNA 4A7XA 2BTYA 2VA1A 2J5TA 3LKKA 2J5VA 4KZTA 3QVFA 2BMUA 2W21A 1OHBA 2J4LA 3TVIA 3D41A 3WWNA 3K4YA 3LL9A 1GSJA 4F6TB 3QVHA 4USJA 3QUOA 2RD5A 2CDQA 4AB7A 2OGXB 3C1NA 1Z9DA 1OHAA 3D40A 2BRIA 3K4OA 1YBDA 3T7BA 2R98A 4A7WA 2V5HA 2J0WA 2R8VA 2AP9A 4NDPA 2BNEA 4JZ7A 2X2WA 3ZZIA 2J4JA 2A1FA 2JJXA 3L76A 3AB4A 2HMFA 4NDQA 3D2MA 3KZFA 3AAWA 3ZZHA 2AKOA 2BNDA 4I49A 3ZZGA 4NDOB 2IJ9A 2JJ4A 2BRXA 3LL5A 3D2PA 4JZ8A 4AXSA 4NDRA 3S6KA 3U6UA 3QURA 2WE4A
chains in the Genus database with same CATH topology
2V4YA 4NDRB 1B7BA 2JI5A 2WE5A 3C20A 4NDPB 3AB2A 4Q1TA 4OLCA 1OH9A 3WWMA 2BNFA 3ZZFA 3B8GA 2WXBA 3EK6A 3S6HA 2OGXA 4NDQB 1E19A 3C1MA 3NWYA 4NDOA 2J4KA 4F6TA 4JZ9A 3EK5A 2BUFA 2J0XA 3S6GA 1GS5A 3K52A 3L86A 3K56A 2E9YA 3QUNA 4A7XA 2BTYA 2VA1A 2J5TA 3LKKA 2J5VA 4KZTA 3QVFA 2BMUA 2W21A 1OHBA 2J4LA 3TVIA 3D41A 3WWNA 3K4YA 3LL9A 1GSJA 4F6TB 3QVHA 4USJA 3QUOA 2RD5A 2CDQA 4AB7A 2OGXB 3C1NA 1Z9DA 1OHAA 3D40A 2BRIA 3K4OA 1YBDA 3T7BA 2R98A 4A7WA 2V5HA 2J0WA 2R8VA 2AP9A 4NDPA 2BNEA 4JZ7A 2X2WA 3ZZIA 2J4JA 2A1FA 2JJXA 3L76A 3AB4A 2HMFA 4NDQA 3D2MA 3KZFA 3AAWA 3ZZHA 2AKOA 2BNDA 4I49A 3ZZGA 4NDOB 2IJ9A 2JJ4A 2BRXA 3LL5A 3D2PA 4JZ8A 4AXSA 4NDRA 3S6KA 3U6UA 3QURA 2WE4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V4Y A;  4NDR B;  1B7B A;  2JI5 A;  2WE5 A;  3C20 A;  4NDP B;  3AB2 A;  4Q1T A;  4OLC A;  1OH9 A;  3WWM A;  2BNF A;  3ZZF A;  3B8G A;  2WXB A;  3EK6 A;  3S6H A;  2OGX A;  4NDQ B;  1E19 A;  3C1M A;  3NWY A;  4NDO A;  2J4K A;  4F6T A;  4JZ9 A;  3EK5 A;  2BUF A;  2J0X A;  3S6G A;  1GS5 A;  3K52 A;  3L86 A;  3K56 A;  2E9Y A;  3QUN A;  4A7X A;  2BTY A;  2VA1 A;  2J5T A;  3LKK A;  2J5V A;  4KZT A;  3QVF A;  2BMU A;  2W21 A;  1OHB A;  2J4L A;  3TVI A;  3D41 A;  3WWN A;  3K4Y A;  3LL9 A;  1GSJ A;  4F6T B;  3QVH A;  4USJ A;  3QUO A;  2RD5 A;  2CDQ A;  4AB7 A;  2OGX B;  3C1N A;  1Z9D A;  1OHA A;  3D40 A;  2BRI A;  3K4O A;  1YBD A;  3T7B A;  2R98 A;  4A7W A;  2V5H A;  2J0W A;  2R8V A;  2AP9 A;  4NDP A;  2BNE A;  4JZ7 A;  2X2W A;  3ZZI A;  2J4J A;  2A1F A;  2JJX A;  3L76 A;  3AB4 A;  2HMF A;  4NDQ A;  3D2M A;  3KZF A;  3AAW A;  3ZZH A;  2AKO A;  2BND A;  4I49 A;  3ZZG A;  4NDO B;  2IJ9 A;  2JJ4 A;  2BRX A;  3LL5 A;  3D2P A;  4JZ8 A;  4AXS A;  4NDR A;  3S6K A;  3U6U A;  3QUR A;  2WE4 A; 
#chains in the Genus database with same CATH topology
 2V4Y A;  4NDR B;  1B7B A;  2JI5 A;  2WE5 A;  3C20 A;  4NDP B;  3AB2 A;  4Q1T A;  4OLC A;  1OH9 A;  3WWM A;  2BNF A;  3ZZF A;  3B8G A;  2WXB A;  3EK6 A;  3S6H A;  2OGX A;  4NDQ B;  1E19 A;  3C1M A;  3NWY A;  4NDO A;  2J4K A;  4F6T A;  4JZ9 A;  3EK5 A;  2BUF A;  2J0X A;  3S6G A;  1GS5 A;  3K52 A;  3L86 A;  3K56 A;  2E9Y A;  3QUN A;  4A7X A;  2BTY A;  2VA1 A;  2J5T A;  3LKK A;  2J5V A;  4KZT A;  3QVF A;  2BMU A;  2W21 A;  1OHB A;  2J4L A;  3TVI A;  3D41 A;  3WWN A;  3K4Y A;  3LL9 A;  1GSJ A;  4F6T B;  3QVH A;  4USJ A;  3QUO A;  2RD5 A;  2CDQ A;  4AB7 A;  2OGX B;  3C1N A;  1Z9D A;  1OHA A;  3D40 A;  2BRI A;  3K4O A;  1YBD A;  3T7B A;  2R98 A;  4A7W A;  2V5H A;  2J0W A;  2R8V A;  2AP9 A;  4NDP A;  2BNE A;  4JZ7 A;  2X2W A;  3ZZI A;  2J4J A;  2A1F A;  2JJX A;  3L76 A;  3AB4 A;  2HMF A;  4NDQ A;  3D2M A;  3KZF A;  3AAW A;  3ZZH A;  2AKO A;  2BND A;  4I49 A;  3ZZG A;  4NDO B;  2IJ9 A;  2JJ4 A;  2BRX A;  3LL5 A;  3D2P A;  4JZ8 A;  4AXS A;  4NDR A;  3S6K A;  3U6U A;  3QUR A;  2WE4 A; 
#chains in the Genus database with same CATH homology
 2V4Y A;  4NDR B;  1B7B A;  2JI5 A;  2WE5 A;  3C20 A;  4NDP B;  3AB2 A;  4Q1T A;  4OLC A;  1OH9 A;  3WWM A;  2BNF A;  3ZZF A;  3B8G A;  2WXB A;  3EK6 A;  3S6H A;  2OGX A;  4NDQ B;  1E19 A;  3C1M A;  3NWY A;  4NDO A;  2J4K A;  4F6T A;  4JZ9 A;  3EK5 A;  2BUF A;  2J0X A;  3S6G A;  1GS5 A;  3K52 A;  3L86 A;  3K56 A;  2E9Y A;  3QUN A;  4A7X A;  2BTY A;  2VA1 A;  2J5T A;  3LKK A;  2J5V A;  4KZT A;  3QVF A;  2BMU A;  2W21 A;  1OHB A;  2J4L A;  3TVI A;  3D41 A;  3WWN A;  3K4Y A;  3LL9 A;  1GSJ A;  4F6T B;  3QVH A;  4USJ A;  3QUO A;  2RD5 A;  2CDQ A;  4AB7 A;  2OGX B;  3C1N A;  1Z9D A;  1OHA A;  3D40 A;  2BRI A;  3K4O A;  1YBD A;  3T7B A;  2R98 A;  4A7W A;  2V5H A;  2J0W A;  2R8V A;  2AP9 A;  4NDP A;  2BNE A;  4JZ7 A;  2X2W A;  3ZZI A;  2J4J A;  2A1F A;  2JJX A;  3L76 A;  3AB4 A;  2HMF A;  4NDQ A;  3D2M A;  3KZF A;  3AAW A;  3ZZH A;  2AKO A;  2BND A;  4I49 A;  3ZZG A;  4NDO B;  2IJ9 A;  2JJ4 A;  2BRX A;  3LL5 A;  3D2P A;  4JZ8 A;  4AXS A;  4NDR A;  3S6K A;  3U6U A;  3QUR A;  2WE4 A; 
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