The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
88
|
sequence length |
300
|
structure length |
292
|
Chain Sequence |
TLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRKRH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Bases of Feed-Back Control of Arginine Biosynthesis, Revealed by the Structure of Two Hexameric N-Acetylglutamate Kinases, from Thermotoga Maritima and Pseudomonas Aeruginosa
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Pseudomonas aeruginosa
|
| molecule keywords |
ACETYLGLUTAMATE KINASE
|
| total genus |
88
|
| structure length |
292
|
| sequence length |
300
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J, K, L
|
| ec nomenclature |
ec
2.7.2.8: Acetylglutamate kinase. |
| pdb deposition date | 2005-06-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00696 | AA_kinase | Amino acid kinase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B; #chains in the Genus database with same CATH topology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B; #chains in the Genus database with same CATH homology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B;
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