3GQHA

Crystal structure of the bacteriophage phi29 gene product 12 c-terminal fragment
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
163
structure length
163
Chain Sequence
DFAEYFESLGGQVIETGYLVTLEKGKIRKAEKGEKIIGVISETAGFVLGESSFEWQGAVLKNEFGGIIYEEVTTEDGVKFKRPLPNPDFDPNKNYIPRSQRREWHVVGLLGQIAVRIDETVKQGHSIDAVGGVATDGDNFIVQEITTPYTKEKGYGVAIVLVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Bacillus phage phi29
publication title Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
pubmed doi rcsb
molecule keywords Preneck appendage protein
total genus 24
structure length 163
sequence length 163
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 3gqhA01
4.10.80.40 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 succinate dehydrogenase protein domain 3gqhA02
1KFYA 3P4PA 3VR9A 2WDRA 4YTNA 1TD3A 5C2TA 2WQYA 3AE3A 4YSYA 2WDQA 3AE9A 1NENA 2H89A 4KX6A 1YQ3A 1KF6A 3SFDA 1YQ4A 5C3JA 1TD0A 2WU5A 3AEAA 2WS3A 1VD0A 3AE7A 3AEFA 1C5EA 3AEDA 3VRBA 4YTPA 3AE8A 1TCZA 2ACZA 4YXDA 2WU2A 2FBWA 3SFEA 3AE6A 3AEBA 3P4RA 3AECA 3AE4A 2WP9A 4YSXA 2H88A 1TD4A 3AE5A 3AE1A 3GQHA 3VRAA 4YSZA 1ZP0A 3SUCA 3AEGA 3CIRA 3P4SA 3VR8A 1L0VA 3AEEA 1NEKA 2B76A 3GQKA 2WDVA 3P4QA 3AE2A 3ABVA 4YTMA 1ZOYA 4YT0A
chains in the Genus database with same CATH superfamily
2PZSA 4YTNA 5C2TA 1TD3A 3AE3A 1D4M4 1HXS4 1RHI4 2H89A 1PIV4 2X5ID 3FI7A 2RS54 1AR64 1BEV4 1TCZA 1R084 2WU2A 3AEBA 1XHZA 4YSXA 1TD4A 3AE1A 1VBC4 1K5MD 3VRAA 3SUCA 3AEGA 1PO14 1Z7S4 3AEEA 3JBG4 3P4QA 3ABVA 2RR14 4YT0A 1KFYA 1RUJ4 4YSYA 1NENA 1RUF4 1RUG4 2PLV4 2WU5A 1AR74 3AEAA 1VBA4 3VRBA 3AEDA 2EX3A 3AE8A 2FBWA 3SFEA 3AE6A 1RUC4 4Q4Y4 1HRV4 1EV14 2R7FA 4Q4W4 3J8F4 1PVC4 1POV0 2PYJA 3GQHA 1VBD4 4YSZA 1MQTD 3VR8A 1VBE4 1AL24 1NEKA 2B76A 3P4PA 3VR9A 2WQYA 2WDQA 4KX6A 4GB34 1R094 1YQ4A 2WS3A 4YTPA 1NCQD 3P4RA 3AECA 3AE4A 3JD74 1AR84 1NA1D 2PY5A 1COV4 1XHXA 4PDWD 1RVF4 4RHV4 1ZP0A 1RUD4 2RMU4 2R064 2PW9A 3GQKA 1PO24 3AE2A 1ZOYA 4Q4V4 2R074 2WDRA 1VRH4 4Q4X4 3AE9A 3SFDA 1KF6A 1YQ3A 5C3JA 1TD0A 1RMU4 3AE7A 1VD0A 3AEFA 1OOPD 1C5EA 1HRI4 2R044 4YXDA 2ACZA 1VBB4 2RS14 2RM24 1RUH4 2PYLA 1EAH4 1RUI4 2HWC4 2WP9A 1ASJ4 2H88A 1AR94 3AE5A 3CIRA 3P4SA 1RUE4 1L0VA 2WDVA 4YTMA 2HWB4 2RS34 1H8TD 1XI1A
chains in the Genus database with same CATH topology
1KFYA 3P4PA 3VR9A 2WDRA 4YTNA 1TD3A 5C2TA 2WQYA 3AE3A 4YSYA 2WDQA 3AE9A 1NENA 2H89A 4KX6A 1YQ3A 1KF6A 3SFDA 1YQ4A 5C3JA 1TD0A 2WU5A 3AEAA 2WS3A 1VD0A 3AE7A 3AEFA 1C5EA 3AEDA 3VRBA 4YTPA 3AE8A 1TCZA 2ACZA 4YXDA 2WU2A 2FBWA 3SFEA 3AE6A 3AEBA 3P4RA 3AECA 3AE4A 2WP9A 4YSXA 2H88A 1TD4A 3AE5A 3AE1A 3GQHA 3VRAA 4YSZA 1ZP0A 3SUCA 3AEGA 3CIRA 3P4SA 3VR8A 1L0VA 3AEEA 1NEKA 2B76A 3GQKA 2WDVA 3P4QA 3AE2A 3ABVA 4YTMA 1ZOYA 4YT0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KFY A;  3P4P A;  3VR9 A;  2WDR A;  4YTN A;  1TD3 A;  5C2T A;  2WQY A;  3AE3 A;  4YSY A;  2WDQ A;  3AE9 A;  1NEN A;  2H89 A;  4KX6 A;  1YQ3 A;  1KF6 A;  3SFD A;  1YQ4 A;  5C3J A;  1TD0 A;  2WU5 A;  3AEA A;  2WS3 A;  1VD0 A;  3AE7 A;  3AEF A;  1C5E A;  3AED A;  3VRB A;  4YTP A;  3AE8 A;  1TCZ A;  2ACZ A;  4YXD A;  2WU2 A;  2FBW A;  3SFE A;  3AE6 A;  3AEB A;  3P4R A;  3AEC A;  3AE4 A;  2WP9 A;  4YSX A;  2H88 A;  1TD4 A;  3AE5 A;  3AE1 A;  3GQH A;  3VRA A;  4YSZ A;  1ZP0 A;  3SUC A;  3AEG A;  3CIR A;  3P4S A;  3VR8 A;  1L0V A;  3AEE A;  1NEK A;  2B76 A;  3GQK A;  2WDV A;  3P4Q A;  3AE2 A;  3ABV A;  4YTM A;  1ZOY A;  4YT0 A; 
#chains in the Genus database with same CATH topology
 2PZS A;  4YTN A;  5C2T A;  1TD3 A;  3AE3 A;  1D4M 4;  1HXS 4;  1RHI 4;  2H89 A;  1PIV 4;  2X5I D;  3FI7 A;  2RS5 4;  1AR6 4;  1BEV 4;  1TCZ A;  1R08 4;  2WU2 A;  3AEB A;  1XHZ A;  4YSX A;  1TD4 A;  3AE1 A;  1VBC 4;  1K5M D;  3VRA A;  3SUC A;  3AEG A;  1PO1 4;  1Z7S 4;  3AEE A;  3JBG 4;  3P4Q A;  3ABV A;  2RR1 4;  4YT0 A;  1KFY A;  1RUJ 4;  4YSY A;  1NEN A;  1RUF 4;  1RUG 4;  2PLV 4;  2WU5 A;  1AR7 4;  3AEA A;  1VBA 4;  3VRB A;  3AED A;  2EX3 A;  3AE8 A;  2FBW A;  3SFE A;  3AE6 A;  1RUC 4;  4Q4Y 4;  1HRV 4;  1EV1 4;  2R7F A;  4Q4W 4;  3J8F 4;  1PVC 4;  1POV 0;  2PYJ A;  3GQH A;  1VBD 4;  4YSZ A;  1MQT D;  3VR8 A;  1VBE 4;  1AL2 4;  1NEK A;  2B76 A;  3P4P A;  3VR9 A;  2WQY A;  2WDQ A;  4KX6 A;  4GB3 4;  1R09 4;  1YQ4 A;  2WS3 A;  4YTP A;  1NCQ D;  3P4R A;  3AEC A;  3AE4 A;  3JD7 4;  1AR8 4;  1NA1 D;  2PY5 A;  1COV 4;  1XHX A;  4PDW D;  1RVF 4;  4RHV 4;  1ZP0 A;  1RUD 4;  2RMU 4;  2R06 4;  2PW9 A;  3GQK A;  1PO2 4;  3AE2 A;  1ZOY A;  4Q4V 4;  2R07 4;  2WDR A;  1VRH 4;  4Q4X 4;  3AE9 A;  3SFD A;  1KF6 A;  1YQ3 A;  5C3J A;  1TD0 A;  1RMU 4;  3AE7 A;  1VD0 A;  3AEF A;  1OOP D;  1C5E A;  1HRI 4;  2R04 4;  4YXD A;  2ACZ A;  1VBB 4;  2RS1 4;  2RM2 4;  1RUH 4;  2PYL A;  1EAH 4;  1RUI 4;  2HWC 4;  2WP9 A;  1ASJ 4;  2H88 A;  1AR9 4;  3AE5 A;  3CIR A;  3P4S A;  1RUE 4;  1L0V A;  2WDV A;  4YTM A;  2HWB 4;  2RS3 4;  1H8T D;  1XI1 A; 
#chains in the Genus database with same CATH homology
 1KFY A;  3P4P A;  3VR9 A;  2WDR A;  4YTN A;  1TD3 A;  5C2T A;  2WQY A;  3AE3 A;  4YSY A;  2WDQ A;  3AE9 A;  1NEN A;  2H89 A;  4KX6 A;  1YQ3 A;  1KF6 A;  3SFD A;  1YQ4 A;  5C3J A;  1TD0 A;  2WU5 A;  3AEA A;  2WS3 A;  1VD0 A;  3AE7 A;  3AEF A;  1C5E A;  3AED A;  3VRB A;  4YTP A;  3AE8 A;  1TCZ A;  2ACZ A;  4YXD A;  2WU2 A;  2FBW A;  3SFE A;  3AE6 A;  3AEB A;  3P4R A;  3AEC A;  3AE4 A;  2WP9 A;  4YSX A;  2H88 A;  1TD4 A;  3AE5 A;  3AE1 A;  3GQH A;  3VRA A;  4YSZ A;  1ZP0 A;  3SUC A;  3AEG A;  3CIR A;  3P4S A;  3VR8 A;  1L0V A;  3AEE A;  1NEK A;  2B76 A;  3GQK A;  2WDV A;  3P4Q A;  3AE2 A;  3ABV A;  4YTM A;  1ZOY A;  4YT0 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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