3GQKA

Crystal structure of the bacteriophage phi29 gene product 12 c-terminal fragment in complex with atp
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
163
structure length
163
Chain Sequence
DFAEYFESLGGQVIETGYLVTLEKGKIRKAEKGEKIIGVISETAGFVLGESSFEWQGAVLKNEFGGIIYEEVTTEDGVKFKRPLPNPDFDPNKNYIPRSQRREWHVVGLLGQIAVRIDETVKQGHSIDAVGGVATDGDNFIVQEITTPYTKEKGYGVAIVLVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Bacillus phage phi29
publication title Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
pubmed doi rcsb
molecule keywords Preneck appendage protein
total genus 23
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 3gqkA01
4.10.80.40 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 succinate dehydrogenase protein domain 3gqkA02
3AECA 1L0VA 2WDQA 3AEBA 3AEGA 3SFDA 1ZOYA 4YSXA 1VD0A 3AE1A 3CIRA 3AEAA 3AE9A 1NENA 3VR9A 3P4RA 2WS3A 3AE2A 3AE6A 1TD4A 4YTNA 1KF6A 2B76A 1KFYA 2FBWA 3VR8A 2H88A 1ZP0A 2H89A 4YTMA 2ACZA 3VRAA 2WU5A 1YQ3A 2WP9A 5C3JA 4KX6A 5C2TA 2WDRA 3GQHA 3P4PA 3SFEA 3AEFA 3AEDA 1NEKA 3VRBA 1TD0A 4YTPA 3P4QA 4YT0A 1TCZA 3AE5A 3GQKA 3ABVA 3AE4A 1YQ4A 3AE8A 3P4SA 2WQYA 4YSYA 3SUCA 3AEEA 4YSZA 2WDVA 3AE3A 1C5EA 1TD3A 4YXDA 3AE7A 2WU2A
chains in the Genus database with same CATH superfamily
1L0VA 1VBE4 2RS54 1VBB4 2PYLA 3CIRA 1EAH4 1RUF4 1RUJ4 1XI1A 2B76A 1ZP0A 3VRAA 2R044 2PZSA 2HWC4 1YQ3A 2RMU4 2WP9A 2X5ID 3GQHA 2RM24 1RUI4 3AEFA 1TD0A 1PVC4 1MQTD 3AE8A 1NA1D 4YSYA 1HRI4 3SUCA 3AEEA 3AE3A 2PLV4 1VRH4 1TD3A 3AE7A 1VBD4 3AECA 1RUG4 1VD0A 3AEAA 1PO24 1COV4 1NENA 1VBC4 3P4RA 1AR64 2R074 3VR8A 1RHI4 2ACZA 2RS34 3JBG4 4Q4W4 1HRV4 4KX6A 5C3JA 1POV0 3P4PA 1XHXA 2RS14 1HXS4 2RR14 2PYJA 1TCZA 3P4SA 1RMU4 1RUH4 3AE4A 1YQ4A 2PY5A 1D4M4 2R7FA 3J8F4 1AR84 3SFDA 4YSXA 3AE1A 3AE9A 1AL24 3AE6A 1RUC4 4YTNA 1KFYA 1RUD4 1ASJ4 1K5MD 1BEV4 2WU5A 1R094 1NCQD 1RUE4 3JD74 1EV14 3FI7A 3SFEA 3VRBA 1PIV4 4PDWD 3P4QA 3GQKA 4YSZA 2WDVA 5C2TA 4YXDA 1R084 2WDQA 3AEBA 3AEGA 4Q4X4 1ZOYA 1H8TD 3VR9A 2WS3A 3AE2A 1AR74 1VBA4 1TD4A 1KF6A 1OOPD 2FBWA 1XHZA 2H88A 1AR94 2H89A 4YTMA 1RVF4 4Q4V4 1PO14 2R064 1Z7S4 2WDRA 4Q4Y4 4RHV4 4GB34 3AEDA 1NEKA 2HWB4 4YTPA 4YT0A 2EX3A 3AE5A 3ABVA 2WQYA 2PW9A 1C5EA 2WU2A
chains in the Genus database with same CATH topology
3AECA 1L0VA 2WDQA 3AEBA 3AEGA 3SFDA 1ZOYA 4YSXA 1VD0A 3AE1A 3CIRA 3AEAA 3AE9A 1NENA 3VR9A 3P4RA 2WS3A 3AE2A 3AE6A 1TD4A 4YTNA 1KF6A 2B76A 1KFYA 2FBWA 3VR8A 2H88A 1ZP0A 2H89A 4YTMA 2ACZA 3VRAA 2WU5A 1YQ3A 2WP9A 5C3JA 4KX6A 5C2TA 2WDRA 3GQHA 3P4PA 3SFEA 3AEFA 3AEDA 1NEKA 3VRBA 1TD0A 4YTPA 3P4QA 4YT0A 1TCZA 3AE5A 3GQKA 3ABVA 3AE4A 1YQ4A 3AE8A 3P4SA 2WQYA 4YSYA 3SUCA 3AEEA 4YSZA 2WDVA 3AE3A 1C5EA 1TD3A 4YXDA 3AE7A 2WU2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AEC A;  1L0V A;  2WDQ A;  3AEB A;  3AEG A;  3SFD A;  1ZOY A;  4YSX A;  1VD0 A;  3AE1 A;  3CIR A;  3AEA A;  3AE9 A;  1NEN A;  3VR9 A;  3P4R A;  2WS3 A;  3AE2 A;  3AE6 A;  1TD4 A;  4YTN A;  1KF6 A;  2B76 A;  1KFY A;  2FBW A;  3VR8 A;  2H88 A;  1ZP0 A;  2H89 A;  4YTM A;  2ACZ A;  3VRA A;  2WU5 A;  1YQ3 A;  2WP9 A;  5C3J A;  4KX6 A;  5C2T A;  2WDR A;  3GQH A;  3P4P A;  3SFE A;  3AEF A;  3AED A;  1NEK A;  3VRB A;  1TD0 A;  4YTP A;  3P4Q A;  4YT0 A;  1TCZ A;  3AE5 A;  3GQK A;  3ABV A;  3AE4 A;  1YQ4 A;  3AE8 A;  3P4S A;  2WQY A;  4YSY A;  3SUC A;  3AEE A;  4YSZ A;  2WDV A;  3AE3 A;  1C5E A;  1TD3 A;  4YXD A;  3AE7 A;  2WU2 A; 
#chains in the Genus database with same CATH topology
 1L0V A;  1VBE 4;  2RS5 4;  1VBB 4;  2PYL A;  3CIR A;  1EAH 4;  1RUF 4;  1RUJ 4;  1XI1 A;  2B76 A;  1ZP0 A;  3VRA A;  2R04 4;  2PZS A;  2HWC 4;  1YQ3 A;  2RMU 4;  2WP9 A;  2X5I D;  3GQH A;  2RM2 4;  1RUI 4;  3AEF A;  1TD0 A;  1PVC 4;  1MQT D;  3AE8 A;  1NA1 D;  4YSY A;  1HRI 4;  3SUC A;  3AEE A;  3AE3 A;  2PLV 4;  1VRH 4;  1TD3 A;  3AE7 A;  1VBD 4;  3AEC A;  1RUG 4;  1VD0 A;  3AEA A;  1PO2 4;  1COV 4;  1NEN A;  1VBC 4;  3P4R A;  1AR6 4;  2R07 4;  3VR8 A;  1RHI 4;  2ACZ A;  2RS3 4;  3JBG 4;  4Q4W 4;  1HRV 4;  4KX6 A;  5C3J A;  1POV 0;  3P4P A;  1XHX A;  2RS1 4;  1HXS 4;  2RR1 4;  2PYJ A;  1TCZ A;  3P4S A;  1RMU 4;  1RUH 4;  3AE4 A;  1YQ4 A;  2PY5 A;  1D4M 4;  2R7F A;  3J8F 4;  1AR8 4;  3SFD A;  4YSX A;  3AE1 A;  3AE9 A;  1AL2 4;  3AE6 A;  1RUC 4;  4YTN A;  1KFY A;  1RUD 4;  1ASJ 4;  1K5M D;  1BEV 4;  2WU5 A;  1R09 4;  1NCQ D;  1RUE 4;  3JD7 4;  1EV1 4;  3FI7 A;  3SFE A;  3VRB A;  1PIV 4;  4PDW D;  3P4Q A;  3GQK A;  4YSZ A;  2WDV A;  5C2T A;  4YXD A;  1R08 4;  2WDQ A;  3AEB A;  3AEG A;  4Q4X 4;  1ZOY A;  1H8T D;  3VR9 A;  2WS3 A;  3AE2 A;  1AR7 4;  1VBA 4;  1TD4 A;  1KF6 A;  1OOP D;  2FBW A;  1XHZ A;  2H88 A;  1AR9 4;  2H89 A;  4YTM A;  1RVF 4;  4Q4V 4;  1PO1 4;  2R06 4;  1Z7S 4;  2WDR A;  4Q4Y 4;  4RHV 4;  4GB3 4;  3AED A;  1NEK A;  2HWB 4;  4YTP A;  4YT0 A;  2EX3 A;  3AE5 A;  3ABV A;  2WQY A;  2PW9 A;  1C5E A;  2WU2 A; 
#chains in the Genus database with same CATH homology
 3AEC A;  1L0V A;  2WDQ A;  3AEB A;  3AEG A;  3SFD A;  1ZOY A;  4YSX A;  1VD0 A;  3AE1 A;  3CIR A;  3AEA A;  3AE9 A;  1NEN A;  3VR9 A;  3P4R A;  2WS3 A;  3AE2 A;  3AE6 A;  1TD4 A;  4YTN A;  1KF6 A;  2B76 A;  1KFY A;  2FBW A;  3VR8 A;  2H88 A;  1ZP0 A;  2H89 A;  4YTM A;  2ACZ A;  3VRA A;  2WU5 A;  1YQ3 A;  2WP9 A;  5C3J A;  4KX6 A;  5C2T A;  2WDR A;  3GQH A;  3P4P A;  3SFE A;  3AEF A;  3AED A;  1NEK A;  3VRB A;  1TD0 A;  4YTP A;  3P4Q A;  4YT0 A;  1TCZ A;  3AE5 A;  3GQK A;  3ABV A;  3AE4 A;  1YQ4 A;  3AE8 A;  3P4S A;  2WQY A;  4YSY A;  3SUC A;  3AEE A;  4YSZ A;  2WDV A;  3AE3 A;  1C5E A;  1TD3 A;  4YXD A;  3AE7 A;  2WU2 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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