3LL5A

Crystal structure of t. acidophilum isopentenyl phosphate kinase product complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
246
structure length
233
Chain Sequence
TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Transferase
source organism Thermoplasma acidophilum
publication title X-ray structures of isopentenyl phosphate kinase.
pubmed doi rcsb
molecule keywords Gamma-glutamyl kinase related protein
total genus 61
structure length 233
sequence length 246
chains with identical sequence B, C, D
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3ll5A00
2BNDA 1GSJA 3S6GA 2J4JA 3TVIA 3AB4A 1OH9A 1OHBA 1E19A 4JZ9A 2J4LA 2V5HA 4NDQB 4KZTA 3QUNA 4NDOB 2OGXB 3LL5A 2E9YA 3EK5A 2WE5A 2V4YA 3D2MA 2HMFA 2BRXA 3L86A 2JI5A 4NDRA 2AP9A 3K52A 4JZ8A 3WWNA 3LKKA 2IJ9A 3T7BA 3AAWA 3EK6A 3QVFA 4Q1TA 3S6KA 2W21A 2VA1A 2J4KA 3NWYA 2J5TA 4A7XA 1YBDA 4NDPB 2BNFA 2WE4A 3QUOA 1B7BA 3K4YA 2BRIA 3D40A 4NDQA 3C1NA 4F6TB 3D41A 4NDOA 2OGXA 2RD5A 1OHAA 3C1MA 4USJA 2WXBA 3K4OA 3ZZIA 4OLCA 4A7WA 3D2PA 3LL9A 2A1FA 3ZZFA 3AB2A 3U6UA 3KZFA 2BNEA 3K56A 3S6HA 1Z9DA 4JZ7A 4AXSA 2JJ4A 4NDPA 3QURA 2AKOA 2BMUA 3B8GA 2R98A 3QVHA 3L76A 2J5VA 4I49A 2BTYA 1GS5A 2BUFA 2J0XA 2X2WA 3ZZHA 2JJXA 2R8VA 2J0WA 3C20A 4F6TA 4NDRB 3ZZGA 3WWMA 2CDQA 4AB7A
chains in the Genus database with same CATH superfamily
2BNDA 1GSJA 3S6GA 2J4JA 3TVIA 3AB4A 1OH9A 1OHBA 1E19A 4JZ9A 2J4LA 2V5HA 4NDQB 4KZTA 3QUNA 4NDOB 2OGXB 3LL5A 2E9YA 3EK5A 2WE5A 2V4YA 3D2MA 2HMFA 2BRXA 3L86A 2JI5A 4NDRA 2AP9A 3K52A 4JZ8A 3WWNA 3LKKA 2IJ9A 3T7BA 3AAWA 3EK6A 3QVFA 4Q1TA 3S6KA 2W21A 2VA1A 2J4KA 3NWYA 2J5TA 4A7XA 1YBDA 4NDPB 2BNFA 2WE4A 3QUOA 1B7BA 3K4YA 2BRIA 3D40A 4NDQA 3C1NA 4F6TB 3D41A 4NDOA 2OGXA 2RD5A 1OHAA 3C1MA 4USJA 2WXBA 3K4OA 3ZZIA 4OLCA 4A7WA 3D2PA 3LL9A 2A1FA 3ZZFA 3AB2A 3U6UA 3KZFA 2BNEA 3K56A 3S6HA 1Z9DA 4JZ7A 4AXSA 2JJ4A 4NDPA 3QURA 2AKOA 2BMUA 3B8GA 2R98A 3QVHA 3L76A 2J5VA 4I49A 2BTYA 1GS5A 2BUFA 2J0XA 2X2WA 3ZZHA 2JJXA 2R8VA 2J0WA 3C20A 4F6TA 4NDRB 3ZZGA 3WWMA 2CDQA 4AB7A
chains in the Genus database with same CATH topology
2BNDA 1GSJA 3S6GA 2J4JA 3TVIA 3AB4A 1OH9A 1OHBA 1E19A 4JZ9A 2J4LA 2V5HA 4NDQB 4KZTA 3QUNA 4NDOB 2OGXB 3LL5A 2E9YA 3EK5A 2WE5A 2V4YA 3D2MA 2HMFA 2BRXA 3L86A 2JI5A 4NDRA 2AP9A 3K52A 4JZ8A 3WWNA 3LKKA 2IJ9A 3T7BA 3AAWA 3EK6A 3QVFA 4Q1TA 3S6KA 2W21A 2VA1A 2J4KA 3NWYA 2J5TA 4A7XA 1YBDA 4NDPB 2BNFA 2WE4A 3QUOA 1B7BA 3K4YA 2BRIA 3D40A 4NDQA 3C1NA 4F6TB 3D41A 4NDOA 2OGXA 2RD5A 1OHAA 3C1MA 4USJA 2WXBA 3K4OA 3ZZIA 4OLCA 4A7WA 3D2PA 3LL9A 2A1FA 3ZZFA 3AB2A 3U6UA 3KZFA 2BNEA 3K56A 3S6HA 1Z9DA 4JZ7A 4AXSA 2JJ4A 4NDPA 3QURA 2AKOA 2BMUA 3B8GA 2R98A 3QVHA 3L76A 2J5VA 4I49A 2BTYA 1GS5A 2BUFA 2J0XA 2X2WA 3ZZHA 2JJXA 2R8VA 2J0WA 3C20A 4F6TA 4NDRB 3ZZGA 3WWMA 2CDQA 4AB7A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2BND A;  1GSJ A;  3S6G A;  2J4J A;  3TVI A;  3AB4 A;  1OH9 A;  1OHB A;  1E19 A;  4JZ9 A;  2J4L A;  2V5H A;  4NDQ B;  4KZT A;  3QUN A;  4NDO B;  2OGX B;  3LL5 A;  2E9Y A;  3EK5 A;  2WE5 A;  2V4Y A;  3D2M A;  2HMF A;  2BRX A;  3L86 A;  2JI5 A;  4NDR A;  2AP9 A;  3K52 A;  4JZ8 A;  3WWN A;  3LKK A;  2IJ9 A;  3T7B A;  3AAW A;  3EK6 A;  3QVF A;  4Q1T A;  3S6K A;  2W21 A;  2VA1 A;  2J4K A;  3NWY A;  2J5T A;  4A7X A;  1YBD A;  4NDP B;  2BNF A;  2WE4 A;  3QUO A;  1B7B A;  3K4Y A;  2BRI A;  3D40 A;  4NDQ A;  3C1N A;  4F6T B;  3D41 A;  4NDO A;  2OGX A;  2RD5 A;  1OHA A;  3C1M A;  4USJ A;  2WXB A;  3K4O A;  3ZZI A;  4OLC A;  4A7W A;  3D2P A;  3LL9 A;  2A1F A;  3ZZF A;  3AB2 A;  3U6U A;  3KZF A;  2BNE A;  3K56 A;  3S6H A;  1Z9D A;  4JZ7 A;  4AXS A;  2JJ4 A;  4NDP A;  3QUR A;  2AKO A;  2BMU A;  3B8G A;  2R98 A;  3QVH A;  3L76 A;  2J5V A;  4I49 A;  2BTY A;  1GS5 A;  2BUF A;  2J0X A;  2X2W A;  3ZZH A;  2JJX A;  2R8V A;  2J0W A;  3C20 A;  4F6T A;  4NDR B;  3ZZG A;  3WWM A;  2CDQ A;  4AB7 A; 
#chains in the Genus database with same CATH topology
 2BND A;  1GSJ A;  3S6G A;  2J4J A;  3TVI A;  3AB4 A;  1OH9 A;  1OHB A;  1E19 A;  4JZ9 A;  2J4L A;  2V5H A;  4NDQ B;  4KZT A;  3QUN A;  4NDO B;  2OGX B;  3LL5 A;  2E9Y A;  3EK5 A;  2WE5 A;  2V4Y A;  3D2M A;  2HMF A;  2BRX A;  3L86 A;  2JI5 A;  4NDR A;  2AP9 A;  3K52 A;  4JZ8 A;  3WWN A;  3LKK A;  2IJ9 A;  3T7B A;  3AAW A;  3EK6 A;  3QVF A;  4Q1T A;  3S6K A;  2W21 A;  2VA1 A;  2J4K A;  3NWY A;  2J5T A;  4A7X A;  1YBD A;  4NDP B;  2BNF A;  2WE4 A;  3QUO A;  1B7B A;  3K4Y A;  2BRI A;  3D40 A;  4NDQ A;  3C1N A;  4F6T B;  3D41 A;  4NDO A;  2OGX A;  2RD5 A;  1OHA A;  3C1M A;  4USJ A;  2WXB A;  3K4O A;  3ZZI A;  4OLC A;  4A7W A;  3D2P A;  3LL9 A;  2A1F A;  3ZZF A;  3AB2 A;  3U6U A;  3KZF A;  2BNE A;  3K56 A;  3S6H A;  1Z9D A;  4JZ7 A;  4AXS A;  2JJ4 A;  4NDP A;  3QUR A;  2AKO A;  2BMU A;  3B8G A;  2R98 A;  3QVH A;  3L76 A;  2J5V A;  4I49 A;  2BTY A;  1GS5 A;  2BUF A;  2J0X A;  2X2W A;  3ZZH A;  2JJX A;  2R8V A;  2J0W A;  3C20 A;  4F6T A;  4NDR B;  3ZZG A;  3WWM A;  2CDQ A;  4AB7 A; 
#chains in the Genus database with same CATH homology
 2BND A;  1GSJ A;  3S6G A;  2J4J A;  3TVI A;  3AB4 A;  1OH9 A;  1OHB A;  1E19 A;  4JZ9 A;  2J4L A;  2V5H A;  4NDQ B;  4KZT A;  3QUN A;  4NDO B;  2OGX B;  3LL5 A;  2E9Y A;  3EK5 A;  2WE5 A;  2V4Y A;  3D2M A;  2HMF A;  2BRX A;  3L86 A;  2JI5 A;  4NDR A;  2AP9 A;  3K52 A;  4JZ8 A;  3WWN A;  3LKK A;  2IJ9 A;  3T7B A;  3AAW A;  3EK6 A;  3QVF A;  4Q1T A;  3S6K A;  2W21 A;  2VA1 A;  2J4K A;  3NWY A;  2J5T A;  4A7X A;  1YBD A;  4NDP B;  2BNF A;  2WE4 A;  3QUO A;  1B7B A;  3K4Y A;  2BRI A;  3D40 A;  4NDQ A;  3C1N A;  4F6T B;  3D41 A;  4NDO A;  2OGX A;  2RD5 A;  1OHA A;  3C1M A;  4USJ A;  2WXB A;  3K4O A;  3ZZI A;  4OLC A;  4A7W A;  3D2P A;  3LL9 A;  2A1F A;  3ZZF A;  3AB2 A;  3U6U A;  3KZF A;  2BNE A;  3K56 A;  3S6H A;  1Z9D A;  4JZ7 A;  4AXS A;  2JJ4 A;  4NDP A;  3QUR A;  2AKO A;  2BMU A;  3B8G A;  2R98 A;  3QVH A;  3L76 A;  2J5V A;  4I49 A;  2BTY A;  1GS5 A;  2BUF A;  2J0X A;  2X2W A;  3ZZH A;  2JJX A;  2R8V A;  2J0W A;  3C20 A;  4F6T A;  4NDR B;  3ZZG A;  3WWM A;  2CDQ A;  4AB7 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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