The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
sequence length |
234
|
structure length |
234
|
Chain Sequence |
NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of Helicobacter Pylori Uridylate Kinase: Insight Into Release of the Product Udp
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Helicobacter pylori
|
| molecule keywords |
URIDYLATE KINASE
|
| total genus |
77
|
| structure length |
234
|
| sequence length |
234
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
2.7.4.22: UMP kinase. |
| pdb deposition date | 2011-11-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00696 | AA_kinase | Amino acid kinase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B; #chains in the Genus database with same CATH topology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B; #chains in the Genus database with same CATH homology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 1Z9D A; 2BTY A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B;
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