4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
molecule keywords CARBAMATE KINASE
molecule tags Oxidoreductase
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
4NDOB 1GSJA 3S6GA 2AP9A 3L76A 2RD5A 2BRIA 3QVHA 1E19A 3NWYA 4A7WA 2IJ9A 2R8VA 3TVIA 3C1NA 4I49A 4NDPB 3AB4A 1Z9DA 3AAWA 4NDQB 3ZZIA 2V4YA 3D2MA 3D41A 3S6KA 4NDRA 2BRXA 3QVFA 2J5TA 3QUNA 4USJA 2CDQA 2HMFA 4AB7A 3D2PA 3U6UA 4NDQA 4JZ8A 3ZZHA 3EK5A 3T7BA 2J5VA 2OGXA 2WE5A 4NDOA 2A1FA 2JI5A 2W21A 3ZZFA 4AXSA 1OHAA 2J4KA 3LKKA 2R98A 3WWNA 4KZTA 2WXBA 2J4LA 3ZZGA 3C20A 2BNFA 2BTYA 2JJXA 2WE4A 2V5HA 3K56A 3L86A 3AB2A 2J0XA 4NDPA 4JZ7A 3QUOA 1B7BA 2BNEA 4OLCA 3LL5A 3K52A 2J4JA 3D40A 4A7XA 4F6TB 2BNDA 3QURA 4Q1TA 3B8GA 3C1MA 1OHBA 1OH9A 3LL9A 2BUFA 2AKOA 3S6HA 2VA1A 4NDRB 4F6TA 2X2WA 3K4YA 1GS5A 3EK6A 2BMUA 2E9YA 2JJ4A 4JZ9A 2J0WA 3WWMA 3K4OA 1YBDA 2OGXB 3KZFA
chains in the Genus database with same CATH superfamily
4NDOB 1GSJA 3S6GA 2AP9A 3L76A 2RD5A 2BRIA 3QVHA 1E19A 3NWYA 4A7WA 2IJ9A 2R8VA 3TVIA 3C1NA 4I49A 4NDPB 3AB4A 1Z9DA 3AAWA 4NDQB 3ZZIA 2V4YA 3D2MA 3D41A 3S6KA 4NDRA 2BRXA 3QVFA 2J5TA 3QUNA 4USJA 2CDQA 2HMFA 4AB7A 3D2PA 3U6UA 4NDQA 4JZ8A 3ZZHA 3EK5A 3T7BA 2J5VA 2OGXA 2WE5A 4NDOA 2A1FA 2JI5A 2W21A 3ZZFA 4AXSA 1OHAA 2J4KA 3LKKA 2R98A 3WWNA 4KZTA 2WXBA 2J4LA 3ZZGA 3C20A 2BNFA 2BTYA 2JJXA 2WE4A 2V5HA 3K56A 3L86A 3AB2A 2J0XA 4NDPA 4JZ7A 3QUOA 1B7BA 2BNEA 4OLCA 3LL5A 3K52A 2J4JA 3D40A 4A7XA 4F6TB 2BNDA 3QURA 4Q1TA 3B8GA 3C1MA 1OHBA 1OH9A 3LL9A 2BUFA 2AKOA 3S6HA 2VA1A 4NDRB 4F6TA 2X2WA 3K4YA 1GS5A 3EK6A 2BMUA 2E9YA 2JJ4A 4JZ9A 2J0WA 3WWMA 3K4OA 1YBDA 2OGXB 3KZFA
chains in the Genus database with same CATH topology
4NDOB 1GSJA 3S6GA 2AP9A 3L76A 2RD5A 2BRIA 3QVHA 1E19A 3NWYA 4A7WA 2IJ9A 2R8VA 3TVIA 3C1NA 4I49A 4NDPB 3AB4A 1Z9DA 3AAWA 4NDQB 3ZZIA 2V4YA 3D2MA 3D41A 3S6KA 4NDRA 2BRXA 3QVFA 2J5TA 3QUNA 4USJA 2CDQA 2HMFA 4AB7A 3D2PA 3U6UA 4NDQA 4JZ8A 3ZZHA 3EK5A 3T7BA 2J5VA 2OGXA 2WE5A 4NDOA 2A1FA 2JI5A 2W21A 3ZZFA 4AXSA 1OHAA 2J4KA 3LKKA 2R98A 3WWNA 4KZTA 2WXBA 2J4LA 3ZZGA 3C20A 2BNFA 2BTYA 2JJXA 2WE4A 2V5HA 3K56A 3L86A 3AB2A 2J0XA 4NDPA 4JZ7A 3QUOA 1B7BA 2BNEA 4OLCA 3LL5A 3K52A 2J4JA 3D40A 4A7XA 4F6TB 2BNDA 3QURA 4Q1TA 3B8GA 3C1MA 1OHBA 1OH9A 3LL9A 2BUFA 2AKOA 3S6HA 2VA1A 4NDRB 4F6TA 2X2WA 3K4YA 1GS5A 3EK6A 2BMUA 2E9YA 2JJ4A 4JZ9A 2J0WA 3WWMA 3K4OA 1YBDA 2OGXB 3KZFA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4NDO B;  1GSJ A;  3S6G A;  2AP9 A;  3L76 A;  2RD5 A;  2BRI A;  3QVH A;  1E19 A;  3NWY A;  4A7W A;  2IJ9 A;  2R8V A;  3TVI A;  3C1N A;  4I49 A;  4NDP B;  3AB4 A;  1Z9D A;  3AAW A;  4NDQ B;  3ZZI A;  2V4Y A;  3D2M A;  3D41 A;  3S6K A;  4NDR A;  2BRX A;  3QVF A;  2J5T A;  3QUN A;  4USJ A;  2CDQ A;  2HMF A;  4AB7 A;  3D2P A;  3U6U A;  4NDQ A;  4JZ8 A;  3ZZH A;  3EK5 A;  3T7B A;  2J5V A;  2OGX A;  2WE5 A;  4NDO A;  2A1F A;  2JI5 A;  2W21 A;  3ZZF A;  4AXS A;  1OHA A;  2J4K A;  3LKK A;  2R98 A;  3WWN A;  4KZT A;  2WXB A;  2J4L A;  3ZZG A;  3C20 A;  2BNF A;  2BTY A;  2JJX A;  2WE4 A;  2V5H A;  3K56 A;  3L86 A;  3AB2 A;  2J0X A;  4NDP A;  4JZ7 A;  3QUO A;  1B7B A;  2BNE A;  4OLC A;  3LL5 A;  3K52 A;  2J4J A;  3D40 A;  4A7X A;  4F6T B;  2BND A;  3QUR A;  4Q1T A;  3B8G A;  3C1M A;  1OHB A;  1OH9 A;  3LL9 A;  2BUF A;  2AKO A;  3S6H A;  2VA1 A;  4NDR B;  4F6T A;  2X2W A;  3K4Y A;  1GS5 A;  3EK6 A;  2BMU A;  2E9Y A;  2JJ4 A;  4JZ9 A;  2J0W A;  3WWM A;  3K4O A;  1YBD A;  2OGX B;  3KZF A; 
#chains in the Genus database with same CATH topology
 4NDO B;  1GSJ A;  3S6G A;  2AP9 A;  3L76 A;  2RD5 A;  2BRI A;  3QVH A;  1E19 A;  3NWY A;  4A7W A;  2IJ9 A;  2R8V A;  3TVI A;  3C1N A;  4I49 A;  4NDP B;  3AB4 A;  1Z9D A;  3AAW A;  4NDQ B;  3ZZI A;  2V4Y A;  3D2M A;  3D41 A;  3S6K A;  4NDR A;  2BRX A;  3QVF A;  2J5T A;  3QUN A;  4USJ A;  2CDQ A;  2HMF A;  4AB7 A;  3D2P A;  3U6U A;  4NDQ A;  4JZ8 A;  3ZZH A;  3EK5 A;  3T7B A;  2J5V A;  2OGX A;  2WE5 A;  4NDO A;  2A1F A;  2JI5 A;  2W21 A;  3ZZF A;  4AXS A;  1OHA A;  2J4K A;  3LKK A;  2R98 A;  3WWN A;  4KZT A;  2WXB A;  2J4L A;  3ZZG A;  3C20 A;  2BNF A;  2BTY A;  2JJX A;  2WE4 A;  2V5H A;  3K56 A;  3L86 A;  3AB2 A;  2J0X A;  4NDP A;  4JZ7 A;  3QUO A;  1B7B A;  2BNE A;  4OLC A;  3LL5 A;  3K52 A;  2J4J A;  3D40 A;  4A7X A;  4F6T B;  2BND A;  3QUR A;  4Q1T A;  3B8G A;  3C1M A;  1OHB A;  1OH9 A;  3LL9 A;  2BUF A;  2AKO A;  3S6H A;  2VA1 A;  4NDR B;  4F6T A;  2X2W A;  3K4Y A;  1GS5 A;  3EK6 A;  2BMU A;  2E9Y A;  2JJ4 A;  4JZ9 A;  2J0W A;  3WWM A;  3K4O A;  1YBD A;  2OGX B;  3KZF A; 
#chains in the Genus database with same CATH homology
 4NDO B;  1GSJ A;  3S6G A;  2AP9 A;  3L76 A;  2RD5 A;  2BRI A;  3QVH A;  1E19 A;  3NWY A;  4A7W A;  2IJ9 A;  2R8V A;  3TVI A;  3C1N A;  4I49 A;  4NDP B;  3AB4 A;  1Z9D A;  3AAW A;  4NDQ B;  3ZZI A;  2V4Y A;  3D2M A;  3D41 A;  3S6K A;  4NDR A;  2BRX A;  3QVF A;  2J5T A;  3QUN A;  4USJ A;  2CDQ A;  2HMF A;  4AB7 A;  3D2P A;  3U6U A;  4NDQ A;  4JZ8 A;  3ZZH A;  3EK5 A;  3T7B A;  2J5V A;  2OGX A;  2WE5 A;  4NDO A;  2A1F A;  2JI5 A;  2W21 A;  3ZZF A;  4AXS A;  1OHA A;  2J4K A;  3LKK A;  2R98 A;  3WWN A;  4KZT A;  2WXB A;  2J4L A;  3ZZG A;  3C20 A;  2BNF A;  2BTY A;  2JJX A;  2WE4 A;  2V5H A;  3K56 A;  3L86 A;  3AB2 A;  2J0X A;  4NDP A;  4JZ7 A;  3QUO A;  1B7B A;  2BNE A;  4OLC A;  3LL5 A;  3K52 A;  2J4J A;  3D40 A;  4A7X A;  4F6T B;  2BND A;  3QUR A;  4Q1T A;  3B8G A;  3C1M A;  1OHB A;  1OH9 A;  3LL9 A;  2BUF A;  2AKO A;  3S6H A;  2VA1 A;  4NDR B;  4F6T A;  2X2W A;  3K4Y A;  1GS5 A;  3EK6 A;  2BMU A;  2E9Y A;  2JJ4 A;  4JZ9 A;  2J0W A;  3WWM A;  3K4O A;  1YBD A;  2OGX B;  3KZF A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite