4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
molecule keywords CARBAMATE KINASE
molecule tags Oxidoreductase
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
4AXSA 3C1MA 2J5VA 3ZZIA 3LL5A 3TVIA 2JI5A 2BNEA 2BMUA 2J0XA 3AB2A 2AKOA 3EK6A 4F6TA 3NWYA 4AB7A 3B8GA 3S6KA 3C1NA 2WE4A 3D41A 2J4KA 3LL9A 4NDOB 3AB4A 2JJXA 2JJ4A 2BTYA 2RD5A 4NDRB 2V5HA 4I49A 2BNFA 3AAWA 3QVHA 3QUOA 2IJ9A 2J5TA 2W21A 2CDQA 3ZZHA 1GSJA 1B7BA 2VA1A 3QURA 3C20A 2WXBA 3KZFA 1GS5A 4JZ7A 2A1FA 2WE5A 3T7BA 2OGXB 2X2WA 3L76A 4NDPA 3QUNA 4NDOA 4NDPB 4JZ9A 4NDRA 4NDQA 1OHAA 4NDQB 3ZZFA 4A7WA 3LKKA 4A7XA 2R98A 2AP9A 2J0WA 3K56A 3L86A 2BNDA 2OGXA 1OHBA 3ZZGA 2J4JA 3D40A 1YBDA 2BRXA 3K4OA 2HMFA 3D2MA 3S6HA 4KZTA 4USJA 3WWNA 2J4LA 4OLCA 1OH9A 3U6UA 3QVFA 4JZ8A 3K52A 4F6TB 3D2PA 2R8VA 1Z9DA 2E9YA 3WWMA 1E19A 2BRIA 3K4YA 2V4YA 3S6GA 4Q1TA 2BUFA 3EK5A
chains in the Genus database with same CATH superfamily
4AXSA 3C1MA 2J5VA 3ZZIA 3LL5A 3TVIA 2JI5A 2BNEA 2BMUA 2J0XA 3AB2A 2AKOA 3EK6A 4F6TA 3NWYA 4AB7A 3B8GA 3S6KA 3C1NA 2WE4A 3D41A 2J4KA 3LL9A 4NDOB 3AB4A 2JJXA 2JJ4A 2BTYA 2RD5A 4NDRB 2V5HA 4I49A 2BNFA 3AAWA 3QVHA 3QUOA 2IJ9A 2J5TA 2W21A 2CDQA 3ZZHA 1GSJA 1B7BA 2VA1A 3QURA 3C20A 2WXBA 3KZFA 1GS5A 4JZ7A 2A1FA 2WE5A 3T7BA 2OGXB 2X2WA 3L76A 4NDPA 3QUNA 4NDOA 4NDPB 4JZ9A 4NDRA 4NDQA 1OHAA 4NDQB 3ZZFA 4A7WA 3LKKA 4A7XA 2R98A 2AP9A 2J0WA 3K56A 3L86A 2BNDA 2OGXA 1OHBA 3ZZGA 2J4JA 3D40A 1YBDA 2BRXA 3K4OA 2HMFA 3D2MA 3S6HA 4KZTA 4USJA 3WWNA 2J4LA 4OLCA 1OH9A 3U6UA 3QVFA 4JZ8A 3K52A 4F6TB 3D2PA 2R8VA 1Z9DA 2E9YA 3WWMA 1E19A 2BRIA 3K4YA 2V4YA 3S6GA 4Q1TA 2BUFA 3EK5A
chains in the Genus database with same CATH topology
4AXSA 3C1MA 2J5VA 3ZZIA 3LL5A 3TVIA 2JI5A 2BNEA 2BMUA 2J0XA 3AB2A 2AKOA 3EK6A 4F6TA 3NWYA 4AB7A 3B8GA 3S6KA 3C1NA 2WE4A 3D41A 2J4KA 3LL9A 4NDOB 3AB4A 2JJXA 2JJ4A 2BTYA 2RD5A 4NDRB 2V5HA 4I49A 2BNFA 3AAWA 3QVHA 3QUOA 2IJ9A 2J5TA 2W21A 2CDQA 3ZZHA 1GSJA 1B7BA 2VA1A 3QURA 3C20A 2WXBA 3KZFA 1GS5A 4JZ7A 2A1FA 2WE5A 3T7BA 2OGXB 2X2WA 3L76A 4NDPA 3QUNA 4NDOA 4NDPB 4JZ9A 4NDRA 4NDQA 1OHAA 4NDQB 3ZZFA 4A7WA 3LKKA 4A7XA 2R98A 2AP9A 2J0WA 3K56A 3L86A 2BNDA 2OGXA 1OHBA 3ZZGA 2J4JA 3D40A 1YBDA 2BRXA 3K4OA 2HMFA 3D2MA 3S6HA 4KZTA 4USJA 3WWNA 2J4LA 4OLCA 1OH9A 3U6UA 3QVFA 4JZ8A 3K52A 4F6TB 3D2PA 2R8VA 1Z9DA 2E9YA 3WWMA 1E19A 2BRIA 3K4YA 2V4YA 3S6GA 4Q1TA 2BUFA 3EK5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4AXS A;  3C1M A;  2J5V A;  3ZZI A;  3LL5 A;  3TVI A;  2JI5 A;  2BNE A;  2BMU A;  2J0X A;  3AB2 A;  2AKO A;  3EK6 A;  4F6T A;  3NWY A;  4AB7 A;  3B8G A;  3S6K A;  3C1N A;  2WE4 A;  3D41 A;  2J4K A;  3LL9 A;  4NDO B;  3AB4 A;  2JJX A;  2JJ4 A;  2BTY A;  2RD5 A;  4NDR B;  2V5H A;  4I49 A;  2BNF A;  3AAW A;  3QVH A;  3QUO A;  2IJ9 A;  2J5T A;  2W21 A;  2CDQ A;  3ZZH A;  1GSJ A;  1B7B A;  2VA1 A;  3QUR A;  3C20 A;  2WXB A;  3KZF A;  1GS5 A;  4JZ7 A;  2A1F A;  2WE5 A;  3T7B A;  2OGX B;  2X2W A;  3L76 A;  4NDP A;  3QUN A;  4NDO A;  4NDP B;  4JZ9 A;  4NDR A;  4NDQ A;  1OHA A;  4NDQ B;  3ZZF A;  4A7W A;  3LKK A;  4A7X A;  2R98 A;  2AP9 A;  2J0W A;  3K56 A;  3L86 A;  2BND A;  2OGX A;  1OHB A;  3ZZG A;  2J4J A;  3D40 A;  1YBD A;  2BRX A;  3K4O A;  2HMF A;  3D2M A;  3S6H A;  4KZT A;  4USJ A;  3WWN A;  2J4L A;  4OLC A;  1OH9 A;  3U6U A;  3QVF A;  4JZ8 A;  3K52 A;  4F6T B;  3D2P A;  2R8V A;  1Z9D A;  2E9Y A;  3WWM A;  1E19 A;  2BRI A;  3K4Y A;  2V4Y A;  3S6G A;  4Q1T A;  2BUF A;  3EK5 A; 
#chains in the Genus database with same CATH topology
 4AXS A;  3C1M A;  2J5V A;  3ZZI A;  3LL5 A;  3TVI A;  2JI5 A;  2BNE A;  2BMU A;  2J0X A;  3AB2 A;  2AKO A;  3EK6 A;  4F6T A;  3NWY A;  4AB7 A;  3B8G A;  3S6K A;  3C1N A;  2WE4 A;  3D41 A;  2J4K A;  3LL9 A;  4NDO B;  3AB4 A;  2JJX A;  2JJ4 A;  2BTY A;  2RD5 A;  4NDR B;  2V5H A;  4I49 A;  2BNF A;  3AAW A;  3QVH A;  3QUO A;  2IJ9 A;  2J5T A;  2W21 A;  2CDQ A;  3ZZH A;  1GSJ A;  1B7B A;  2VA1 A;  3QUR A;  3C20 A;  2WXB A;  3KZF A;  1GS5 A;  4JZ7 A;  2A1F A;  2WE5 A;  3T7B A;  2OGX B;  2X2W A;  3L76 A;  4NDP A;  3QUN A;  4NDO A;  4NDP B;  4JZ9 A;  4NDR A;  4NDQ A;  1OHA A;  4NDQ B;  3ZZF A;  4A7W A;  3LKK A;  4A7X A;  2R98 A;  2AP9 A;  2J0W A;  3K56 A;  3L86 A;  2BND A;  2OGX A;  1OHB A;  3ZZG A;  2J4J A;  3D40 A;  1YBD A;  2BRX A;  3K4O A;  2HMF A;  3D2M A;  3S6H A;  4KZT A;  4USJ A;  3WWN A;  2J4L A;  4OLC A;  1OH9 A;  3U6U A;  3QVF A;  4JZ8 A;  3K52 A;  4F6T B;  3D2P A;  2R8V A;  1Z9D A;  2E9Y A;  3WWM A;  1E19 A;  2BRI A;  3K4Y A;  2V4Y A;  3S6G A;  4Q1T A;  2BUF A;  3EK5 A; 
#chains in the Genus database with same CATH homology
 4AXS A;  3C1M A;  2J5V A;  3ZZI A;  3LL5 A;  3TVI A;  2JI5 A;  2BNE A;  2BMU A;  2J0X A;  3AB2 A;  2AKO A;  3EK6 A;  4F6T A;  3NWY A;  4AB7 A;  3B8G A;  3S6K A;  3C1N A;  2WE4 A;  3D41 A;  2J4K A;  3LL9 A;  4NDO B;  3AB4 A;  2JJX A;  2JJ4 A;  2BTY A;  2RD5 A;  4NDR B;  2V5H A;  4I49 A;  2BNF A;  3AAW A;  3QVH A;  3QUO A;  2IJ9 A;  2J5T A;  2W21 A;  2CDQ A;  3ZZH A;  1GSJ A;  1B7B A;  2VA1 A;  3QUR A;  3C20 A;  2WXB A;  3KZF A;  1GS5 A;  4JZ7 A;  2A1F A;  2WE5 A;  3T7B A;  2OGX B;  2X2W A;  3L76 A;  4NDP A;  3QUN A;  4NDO A;  4NDP B;  4JZ9 A;  4NDR A;  4NDQ A;  1OHA A;  4NDQ B;  3ZZF A;  4A7W A;  3LKK A;  4A7X A;  2R98 A;  2AP9 A;  2J0W A;  3K56 A;  3L86 A;  2BND A;  2OGX A;  1OHB A;  3ZZG A;  2J4J A;  3D40 A;  1YBD A;  2BRX A;  3K4O A;  2HMF A;  3D2M A;  3S6H A;  4KZT A;  4USJ A;  3WWN A;  2J4L A;  4OLC A;  1OH9 A;  3U6U A;  3QVF A;  4JZ8 A;  3K52 A;  4F6T B;  3D2P A;  2R8V A;  1Z9D A;  2E9Y A;  3WWM A;  1E19 A;  2BRI A;  3K4Y A;  2V4Y A;  3S6G A;  4Q1T A;  2BUF A;  3EK5 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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