4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
molecule keywords CARBAMATE KINASE
molecule tags Oxidoreductase
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
3QVFA 2BUFA 3C20A 3D41A 2R8VA 3QVHA 4KZTA 4A7WA 2BRXA 2A1FA 2WXBA 1OHAA 1B7BA 2R98A 3WWNA 4NDRB 2JI5A 4USJA 3NWYA 2X2WA 2OGXB 2J0WA 3QUNA 4JZ7A 3LL5A 3EK6A 2HMFA 2AKOA 4NDOB 2J4JA 3K56A 2V4YA 2BNDA 1Z9DA 3S6KA 4A7XA 3QURA 4NDPA 1E19A 3U6UA 3KZFA 2J5VA 3TVIA 4F6TA 3LL9A 2J4KA 2IJ9A 3B8GA 2JJXA 3C1NA 4NDQA 3WWMA 2J4LA 2WE5A 3K4YA 4JZ9A 4Q1TA 4AB7A 2J5TA 3ZZHA 2V5HA 2BRIA 2BNEA 3C1MA 2RD5A 3K4OA 3ZZGA 2JJ4A 3L86A 1GS5A 4OLCA 3L76A 2E9YA 1GSJA 3EK5A 4I49A 3LKKA 2AP9A 4AXSA 4NDRA 3S6GA 2OGXA 2WE4A 3QUOA 1YBDA 2BMUA 3AB2A 4NDOA 2J0XA 3AB4A 2BTYA 1OH9A 3T7BA 3K52A 4NDPB 3ZZFA 3S6HA 2BNFA 3D2MA 4F6TB 2W21A 3AAWA 3ZZIA 4NDQB 2VA1A 3D2PA 1OHBA 4JZ8A 3D40A 2CDQA
chains in the Genus database with same CATH superfamily
3QVFA 2BUFA 3C20A 3D41A 2R8VA 3QVHA 4KZTA 4A7WA 2BRXA 2A1FA 2WXBA 1OHAA 1B7BA 2R98A 3WWNA 4NDRB 2JI5A 4USJA 3NWYA 2X2WA 2OGXB 2J0WA 3QUNA 4JZ7A 3LL5A 3EK6A 2HMFA 2AKOA 4NDOB 2J4JA 3K56A 2V4YA 2BNDA 1Z9DA 3S6KA 4A7XA 3QURA 4NDPA 1E19A 3U6UA 3KZFA 2J5VA 3TVIA 4F6TA 3LL9A 2J4KA 2IJ9A 3B8GA 2JJXA 3C1NA 4NDQA 3WWMA 2J4LA 2WE5A 3K4YA 4JZ9A 4Q1TA 4AB7A 2J5TA 3ZZHA 2V5HA 2BRIA 2BNEA 3C1MA 2RD5A 3K4OA 3ZZGA 2JJ4A 3L86A 1GS5A 4OLCA 3L76A 2E9YA 1GSJA 3EK5A 4I49A 3LKKA 2AP9A 4AXSA 4NDRA 3S6GA 2OGXA 2WE4A 3QUOA 1YBDA 2BMUA 3AB2A 4NDOA 2J0XA 3AB4A 2BTYA 1OH9A 3T7BA 3K52A 4NDPB 3ZZFA 3S6HA 2BNFA 3D2MA 4F6TB 2W21A 3AAWA 3ZZIA 4NDQB 2VA1A 3D2PA 1OHBA 4JZ8A 3D40A 2CDQA
chains in the Genus database with same CATH topology
3QVFA 2BUFA 3C20A 3D41A 2R8VA 3QVHA 4KZTA 4A7WA 2BRXA 2A1FA 2WXBA 1OHAA 1B7BA 2R98A 3WWNA 4NDRB 2JI5A 4USJA 3NWYA 2X2WA 2OGXB 2J0WA 3QUNA 4JZ7A 3LL5A 3EK6A 2HMFA 2AKOA 4NDOB 2J4JA 3K56A 2V4YA 2BNDA 1Z9DA 3S6KA 4A7XA 3QURA 4NDPA 1E19A 3U6UA 3KZFA 2J5VA 3TVIA 4F6TA 3LL9A 2J4KA 2IJ9A 3B8GA 2JJXA 3C1NA 4NDQA 3WWMA 2J4LA 2WE5A 3K4YA 4JZ9A 4Q1TA 4AB7A 2J5TA 3ZZHA 2V5HA 2BRIA 2BNEA 3C1MA 2RD5A 3K4OA 3ZZGA 2JJ4A 3L86A 1GS5A 4OLCA 3L76A 2E9YA 1GSJA 3EK5A 4I49A 3LKKA 2AP9A 4AXSA 4NDRA 3S6GA 2OGXA 2WE4A 3QUOA 1YBDA 2BMUA 3AB2A 4NDOA 2J0XA 3AB4A 2BTYA 1OH9A 3T7BA 3K52A 4NDPB 3ZZFA 3S6HA 2BNFA 3D2MA 4F6TB 2W21A 3AAWA 3ZZIA 4NDQB 2VA1A 3D2PA 1OHBA 4JZ8A 3D40A 2CDQA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3QVF A;  2BUF A;  3C20 A;  3D41 A;  2R8V A;  3QVH A;  4KZT A;  4A7W A;  2BRX A;  2A1F A;  2WXB A;  1OHA A;  1B7B A;  2R98 A;  3WWN A;  4NDR B;  2JI5 A;  4USJ A;  3NWY A;  2X2W A;  2OGX B;  2J0W A;  3QUN A;  4JZ7 A;  3LL5 A;  3EK6 A;  2HMF A;  2AKO A;  4NDO B;  2J4J A;  3K56 A;  2V4Y A;  2BND A;  1Z9D A;  3S6K A;  4A7X A;  3QUR A;  4NDP A;  1E19 A;  3U6U A;  3KZF A;  2J5V A;  3TVI A;  4F6T A;  3LL9 A;  2J4K A;  2IJ9 A;  3B8G A;  2JJX A;  3C1N A;  4NDQ A;  3WWM A;  2J4L A;  2WE5 A;  3K4Y A;  4JZ9 A;  4Q1T A;  4AB7 A;  2J5T A;  3ZZH A;  2V5H A;  2BRI A;  2BNE A;  3C1M A;  2RD5 A;  3K4O A;  3ZZG A;  2JJ4 A;  3L86 A;  1GS5 A;  4OLC A;  3L76 A;  2E9Y A;  1GSJ A;  3EK5 A;  4I49 A;  3LKK A;  2AP9 A;  4AXS A;  4NDR A;  3S6G A;  2OGX A;  2WE4 A;  3QUO A;  1YBD A;  2BMU A;  3AB2 A;  4NDO A;  2J0X A;  3AB4 A;  2BTY A;  1OH9 A;  3T7B A;  3K52 A;  4NDP B;  3ZZF A;  3S6H A;  2BNF A;  3D2M A;  4F6T B;  2W21 A;  3AAW A;  3ZZI A;  4NDQ B;  2VA1 A;  3D2P A;  1OHB A;  4JZ8 A;  3D40 A;  2CDQ A; 
#chains in the Genus database with same CATH topology
 3QVF A;  2BUF A;  3C20 A;  3D41 A;  2R8V A;  3QVH A;  4KZT A;  4A7W A;  2BRX A;  2A1F A;  2WXB A;  1OHA A;  1B7B A;  2R98 A;  3WWN A;  4NDR B;  2JI5 A;  4USJ A;  3NWY A;  2X2W A;  2OGX B;  2J0W A;  3QUN A;  4JZ7 A;  3LL5 A;  3EK6 A;  2HMF A;  2AKO A;  4NDO B;  2J4J A;  3K56 A;  2V4Y A;  2BND A;  1Z9D A;  3S6K A;  4A7X A;  3QUR A;  4NDP A;  1E19 A;  3U6U A;  3KZF A;  2J5V A;  3TVI A;  4F6T A;  3LL9 A;  2J4K A;  2IJ9 A;  3B8G A;  2JJX A;  3C1N A;  4NDQ A;  3WWM A;  2J4L A;  2WE5 A;  3K4Y A;  4JZ9 A;  4Q1T A;  4AB7 A;  2J5T A;  3ZZH A;  2V5H A;  2BRI A;  2BNE A;  3C1M A;  2RD5 A;  3K4O A;  3ZZG A;  2JJ4 A;  3L86 A;  1GS5 A;  4OLC A;  3L76 A;  2E9Y A;  1GSJ A;  3EK5 A;  4I49 A;  3LKK A;  2AP9 A;  4AXS A;  4NDR A;  3S6G A;  2OGX A;  2WE4 A;  3QUO A;  1YBD A;  2BMU A;  3AB2 A;  4NDO A;  2J0X A;  3AB4 A;  2BTY A;  1OH9 A;  3T7B A;  3K52 A;  4NDP B;  3ZZF A;  3S6H A;  2BNF A;  3D2M A;  4F6T B;  2W21 A;  3AAW A;  3ZZI A;  4NDQ B;  2VA1 A;  3D2P A;  1OHB A;  4JZ8 A;  3D40 A;  2CDQ A; 
#chains in the Genus database with same CATH homology
 3QVF A;  2BUF A;  3C20 A;  3D41 A;  2R8V A;  3QVH A;  4KZT A;  4A7W A;  2BRX A;  2A1F A;  2WXB A;  1OHA A;  1B7B A;  2R98 A;  3WWN A;  4NDR B;  2JI5 A;  4USJ A;  3NWY A;  2X2W A;  2OGX B;  2J0W A;  3QUN A;  4JZ7 A;  3LL5 A;  3EK6 A;  2HMF A;  2AKO A;  4NDO B;  2J4J A;  3K56 A;  2V4Y A;  2BND A;  1Z9D A;  3S6K A;  4A7X A;  3QUR A;  4NDP A;  1E19 A;  3U6U A;  3KZF A;  2J5V A;  3TVI A;  4F6T A;  3LL9 A;  2J4K A;  2IJ9 A;  3B8G A;  2JJX A;  3C1N A;  4NDQ A;  3WWM A;  2J4L A;  2WE5 A;  3K4Y A;  4JZ9 A;  4Q1T A;  4AB7 A;  2J5T A;  3ZZH A;  2V5H A;  2BRI A;  2BNE A;  3C1M A;  2RD5 A;  3K4O A;  3ZZG A;  2JJ4 A;  3L86 A;  1GS5 A;  4OLC A;  3L76 A;  2E9Y A;  1GSJ A;  3EK5 A;  4I49 A;  3LKK A;  2AP9 A;  4AXS A;  4NDR A;  3S6G A;  2OGX A;  2WE4 A;  3QUO A;  1YBD A;  2BMU A;  3AB2 A;  4NDO A;  2J0X A;  3AB4 A;  2BTY A;  1OH9 A;  3T7B A;  3K52 A;  4NDP B;  3ZZF A;  3S6H A;  2BNF A;  3D2M A;  4F6T B;  2W21 A;  3AAW A;  3ZZI A;  4NDQ B;  2VA1 A;  3D2P A;  1OHB A;  4JZ8 A;  3D40 A;  2CDQ A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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