1S4DA

Crystal structure analysis of the s-adenosyl-l-methionine dependent uroporphyrinogen-iii c-methyltransferase sumt
Total Genus 68

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
265
structure length
256
Chain Sequence
FAGLPALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGPSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRAALDWIGALDGRKLAADP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (109-118)TIV1 (13-16)S1 (16-21)S4 (94-99)TI2 (130-133)TII1 (26-29)TIV2 (27-30)EMPTYAH1 (32-40)3H1 (54-57)TIV4 (58-61)TVIII1 (41-44)TIV5 (59-62)AH2 (78-91)TVIII2 (49-52)TIV3 (51-54)TIV6 (69-74)TIV7 (70-75)TI1 (102-105)TIV8 (99-102)TIV9 (104-107)S5 (123-126)AH4 (133-139)S10 (241-245)TVIII3 (142-145)O1 (168-170)TI3 (145-148)TIV10 (146-149)S6 (152-156)TIV12 (182-185)AH7 (227-235)AH5 (170-174)TIV11 (174-177)TVIII4 (177-180)S7 (179-183)S8 (206-211)AH6 (188-199)TI4 (185-188)TIV13 (210-213)TI5 (202-205)S9 (219-224)TI7 (224-227)TI6 (215-218)TII2 (212-215)3H2 (247-254)Updating...
connected with : NaN
molecule tags Transferase
source organism Pseudomonas denitrificans
publication title Structure/Function Studies on a S-Adenosyl-l-methionine-dependent Uroporphyrinogen III C Methyltransferase (SUMT), a Key Regulatory Enzyme of Tetrapyrrole Biosynthesis
pubmed doi rcsb
molecule keywords Uroporphyrin-III C-methyltransferase
total genus 68
structure length 256
sequence length 265
chains with identical sequence B, D, E, F, G, H, I, J, K, L, M
ec nomenclature ec 2.1.1.107: Uroporphyrinogen-III C-methyltransferase.
pdb deposition date 2004-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1s4dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1s4dA01
2EGBA 2E17A 1WDEA 2EH4A 2EL0A 3FQ6A 2DV5A 2EK7A 2E0NA 2QBUA 2EJJA 2PB4A 2Z6RA 2P6IA 2E8SA 2PCIA 2EEQA 2EJZA 2P5FA 2OWVA 2OWKA 2EMUA 2P6LA 2DSIA 2YBQA 2EGSA 2EK3A 2EHLA 2E8RA 2DXVA 2EHCA 2PCHA 2ED5A 2PCGA 1VCEA 2EH5A 2ED3A 3HH1A 2BB3A 2E07A 2ENIA 2P2XA 2DXXA 2EJKA 2E4RA 2EL2A 2EH2A 2ELDA 2OWGA 3ND1A 2DV4A 2HUQA 3NEIA 2HUTA 1VHVA 2PCMA 2DSHA 3NUTA 1PJTA 2P6DA 2CBFA 2E16A 2P9DA 2DXWA 2E15A 1VA0A 2DSGA 1V9AA 1WYZA 2E0KA 3I4TA 2PB6A 1S4DA 2ELEA 2E7RA 2ZVCA 3FFYA 2EGLA 2DV7A 2OWFA 2E8QA 3KWPA 2OWUA 1WNGA 2PCKA 2EMRA 2PB5A 1PJSA 1PJQA 2EN5A 2E08A 2EL1A 2HUXA 2EK4A 2DV3A 2NPNA 1VE2A 2DEKA 4E16A 2P5CA 2PCAA 2ZVBA 2E8HA 5HW4A 2YBOA 2HR8A 1CBFA 2HUVA 3NDCA 2EK2A 2E4NA 2P6KA 2EKAA 2EL3A
chains in the Genus database with same CATH superfamily
2EGBA 2E17A 1WDEA 2EH4A 2EL0A 3KE8A 4MUXA 3FQ6A 2DV5A 2EK7A 4MV0A 2E0NA 3SZLA 2QBUA 2EJJA 2PB4A 2Z6RA 2P6IA 2E8SA 3UV7A 2PCIA 2EEQA 2EJZA 2P5FA 2OWVA 2OWKA 2EMUA 2P6LA 2DSIA 2YBQA 2EGSA 2EK3A 3UTCA 3F7TA 2EHLA 2E8RA 2DXVA 2EHCA 2PCHA 2ED5A 3T0FA 2PCGA 2KYYA 1VCEA 2EH5A 2ED3A 4H4CA 3HH1A 2BB3A 2E07A 3ZGNA 2ENIA 2P2XA 3KE9A 2DXXA 2EJKA 2E4RA 2EL2A 2EH2A 2ELDA 2OWGA 4EB3A 3ND1A 3UV3A 2DV4A 3UWMA 2HUQA 3NEIA 2HUTA 3TIXB 1VHVA 2PCMA 3KEFA 4H4EA 3URKA 2DSHA 3NUTA 1PJTA 2P6DA 2CBFA 2E16A 2P9DA 4MUYA 2DXWA 4MV5A 2E15A 3KEMA 1VA0A 2DSGA 1V9AA 1WYZA 3T0GA 2E0KA 3I4TA 3LMMA 2PB6A 1S4DA 2ELEA 3SZUA 2E7RA 3SZOA 2ZVCA 3FFYA 2EGLA 2DV7A 2OWFA 2E8QA 3KWPA 2OWUA 3DNFA 3UTDA 1WNGA 2PCKA 2EMRA 2PB5A 1PJSA 1PJQA 2EN5A 2E08A 2EL1A 2HUXA 3KELA 2EK4A 2DV3A 2NPNA 1VE2A 2DEKA 4E16A 2P5CA 2PCAA 2ZVBA 2E8HA 5HW4A 2YBOA 2HR8A 4N7BA 1CBFA 2HUVA 3UV6A 3NDCA 3ZGLA 2EK2A 2E4NA 2P6KA 2EKAA 2EL3A 4H4DA
chains in the Genus database with same CATH topology
2EGBA 2E17A 1WDEA 2EH4A 2EL0A 3KE8A 4MUXA 3FQ6A 2DV5A 2EK7A 4MV0A 2E0NA 3SZLA 2QBUA 2EJJA 2PB4A 2Z6RA 2P6IA 2E8SA 3UV7A 2PCIA 2EEQA 2EJZA 2P5FA 2OWVA 2OWKA 2EMUA 2P6LA 2DSIA 2YBQA 2EGSA 2EK3A 3UTCA 3F7TA 2EHLA 2E8RA 2DXVA 2EHCA 2PCHA 2ED5A 3T0FA 2PCGA 2KYYA 1VCEA 2EH5A 2ED3A 4H4CA 3HH1A 2BB3A 2E07A 3ZGNA 2ENIA 2P2XA 3KE9A 2DXXA 2EJKA 2E4RA 2EL2A 2EH2A 2ELDA 2OWGA 4EB3A 3ND1A 3UV3A 2DV4A 3UWMA 2HUQA 3NEIA 2HUTA 3TIXB 1VHVA 2PCMA 3KEFA 4H4EA 3URKA 2DSHA 3NUTA 1PJTA 2P6DA 2CBFA 2E16A 2P9DA 4MUYA 2DXWA 4MV5A 2E15A 3KEMA 1VA0A 2DSGA 1V9AA 1WYZA 3T0GA 2E0KA 3I4TA 3LMMA 2PB6A 1S4DA 2ELEA 3SZUA 2E7RA 3SZOA 2ZVCA 3FFYA 2EGLA 2DV7A 2OWFA 2E8QA 3KWPA 2OWUA 3DNFA 3UTDA 1WNGA 2PCKA 2EMRA 2PB5A 1PJSA 1PJQA 2EN5A 2E08A 2EL1A 2HUXA 3KELA 2EK4A 2DV3A 2NPNA 1VE2A 2DEKA 4E16A 2P5CA 2PCAA 2ZVBA 2E8HA 5HW4A 2YBOA 2HR8A 4N7BA 1CBFA 2HUVA 3UV6A 3NDCA 3ZGLA 2EK2A 2E4NA 2P6KA 2EKAA 2EL3A 4H4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGB A;  2E17 A;  1WDE A;  2EH4 A;  2EL0 A;  3FQ6 A;  2DV5 A;  2EK7 A;  2E0N A;  2QBU A;  2EJJ A;  2PB4 A;  2Z6R A;  2P6I A;  2E8S A;  2PCI A;  2EEQ A;  2EJZ A;  2P5F A;  2OWV A;  2OWK A;  2EMU A;  2P6L A;  2DSI A;  2YBQ A;  2EGS A;  2EK3 A;  2EHL A;  2E8R A;  2DXV A;  2EHC A;  2PCH A;  2ED5 A;  2PCG A;  1VCE A;  2EH5 A;  2ED3 A;  3HH1 A;  2BB3 A;  2E07 A;  2ENI A;  2P2X A;  2DXX A;  2EJK A;  2E4R A;  2EL2 A;  2EH2 A;  2ELD A;  2OWG A;  3ND1 A;  2DV4 A;  2HUQ A;  3NEI A;  2HUT A;  1VHV A;  2PCM A;  2DSH A;  3NUT A;  1PJT A;  2P6D A;  2CBF A;  2E16 A;  2P9D A;  2DXW A;  2E15 A;  1VA0 A;  2DSG A;  1V9A A;  1WYZ A;  2E0K A;  3I4T A;  2PB6 A;  1S4D A;  2ELE A;  2E7R A;  2ZVC A;  3FFY A;  2EGL A;  2DV7 A;  2OWF A;  2E8Q A;  3KWP A;  2OWU A;  1WNG A;  2PCK A;  2EMR A;  2PB5 A;  1PJS A;  1PJQ A;  2EN5 A;  2E08 A;  2EL1 A;  2HUX A;  2EK4 A;  2DV3 A;  2NPN A;  1VE2 A;  2DEK A;  4E16 A;  2P5C A;  2PCA A;  2ZVB A;  2E8H A;  5HW4 A;  2YBO A;  2HR8 A;  1CBF A;  2HUV A;  3NDC A;  2EK2 A;  2E4N A;  2P6K A;  2EKA A;  2EL3 A; 
#chains in the Genus database with same CATH topology
 2EGB A;  2E17 A;  1WDE A;  2EH4 A;  2EL0 A;  3KE8 A;  4MUX A;  3FQ6 A;  2DV5 A;  2EK7 A;  4MV0 A;  2E0N A;  3SZL A;  2QBU A;  2EJJ A;  2PB4 A;  2Z6R A;  2P6I A;  2E8S A;  3UV7 A;  2PCI A;  2EEQ A;  2EJZ A;  2P5F A;  2OWV A;  2OWK A;  2EMU A;  2P6L A;  2DSI A;  2YBQ A;  2EGS A;  2EK3 A;  3UTC A;  3F7T A;  2EHL A;  2E8R A;  2DXV A;  2EHC A;  2PCH A;  2ED5 A;  3T0F A;  2PCG A;  2KYY A;  1VCE A;  2EH5 A;  2ED3 A;  4H4C A;  3HH1 A;  2BB3 A;  2E07 A;  3ZGN A;  2ENI A;  2P2X A;  3KE9 A;  2DXX A;  2EJK A;  2E4R A;  2EL2 A;  2EH2 A;  2ELD A;  2OWG A;  4EB3 A;  3ND1 A;  3UV3 A;  2DV4 A;  3UWM A;  2HUQ A;  3NEI A;  2HUT A;  3TIX B;  1VHV A;  2PCM A;  3KEF A;  4H4E A;  3URK A;  2DSH A;  3NUT A;  1PJT A;  2P6D A;  2CBF A;  2E16 A;  2P9D A;  4MUY A;  2DXW A;  4MV5 A;  2E15 A;  3KEM A;  1VA0 A;  2DSG A;  1V9A A;  1WYZ A;  3T0G A;  2E0K A;  3I4T A;  3LMM A;  2PB6 A;  1S4D A;  2ELE A;  3SZU A;  2E7R A;  3SZO A;  2ZVC A;  3FFY A;  2EGL A;  2DV7 A;  2OWF A;  2E8Q A;  3KWP A;  2OWU A;  3DNF A;  3UTD A;  1WNG A;  2PCK A;  2EMR A;  2PB5 A;  1PJS A;  1PJQ A;  2EN5 A;  2E08 A;  2EL1 A;  2HUX A;  3KEL A;  2EK4 A;  2DV3 A;  2NPN A;  1VE2 A;  2DEK A;  4E16 A;  2P5C A;  2PCA A;  2ZVB A;  2E8H A;  5HW4 A;  2YBO A;  2HR8 A;  4N7B A;  1CBF A;  2HUV A;  3UV6 A;  3NDC A;  3ZGL A;  2EK2 A;  2E4N A;  2P6K A;  2EKA A;  2EL3 A;  4H4D A; 
#chains in the Genus database with same CATH homology
 2EGB A;  2E17 A;  1WDE A;  2EH4 A;  2EL0 A;  3KE8 A;  4MUX A;  3FQ6 A;  2DV5 A;  2EK7 A;  4MV0 A;  2E0N A;  3SZL A;  2QBU A;  2EJJ A;  2PB4 A;  2Z6R A;  2P6I A;  2E8S A;  3UV7 A;  2PCI A;  2EEQ A;  2EJZ A;  2P5F A;  2OWV A;  2OWK A;  2EMU A;  2P6L A;  2DSI A;  2YBQ A;  2EGS A;  2EK3 A;  3UTC A;  3F7T A;  2EHL A;  2E8R A;  2DXV A;  2EHC A;  2PCH A;  2ED5 A;  3T0F A;  2PCG A;  2KYY A;  1VCE A;  2EH5 A;  2ED3 A;  4H4C A;  3HH1 A;  2BB3 A;  2E07 A;  3ZGN A;  2ENI A;  2P2X A;  3KE9 A;  2DXX A;  2EJK A;  2E4R A;  2EL2 A;  2EH2 A;  2ELD A;  2OWG A;  4EB3 A;  3ND1 A;  3UV3 A;  2DV4 A;  3UWM A;  2HUQ A;  3NEI A;  2HUT A;  3TIX B;  1VHV A;  2PCM A;  3KEF A;  4H4E A;  3URK A;  2DSH A;  3NUT A;  1PJT A;  2P6D A;  2CBF A;  2E16 A;  2P9D A;  4MUY A;  2DXW A;  4MV5 A;  2E15 A;  3KEM A;  1VA0 A;  2DSG A;  1V9A A;  1WYZ A;  3T0G A;  2E0K A;  3I4T A;  3LMM A;  2PB6 A;  1S4D A;  2ELE A;  3SZU A;  2E7R A;  3SZO A;  2ZVC A;  3FFY A;  2EGL A;  2DV7 A;  2OWF A;  2E8Q A;  3KWP A;  2OWU A;  3DNF A;  3UTD A;  1WNG A;  2PCK A;  2EMR A;  2PB5 A;  1PJS A;  1PJQ A;  2EN5 A;  2E08 A;  2EL1 A;  2HUX A;  3KEL A;  2EK4 A;  2DV3 A;  2NPN A;  1VE2 A;  2DEK A;  4E16 A;  2P5C A;  2PCA A;  2ZVB A;  2E8H A;  5HW4 A;  2YBO A;  2HR8 A;  4N7B A;  1CBF A;  2HUV A;  3UV6 A;  3NDC A;  3ZGL A;  2EK2 A;  2E4N A;  2P6K A;  2EKA A;  2EL3 A;  4H4D A; 
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similar chains in the pdb database (?% sequence similarity)

 
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