2EL1A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l44m)
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTMGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L44M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 79
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el1A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el1A01
2BB3A 2P6IA 1S4DA 2EJKA 2EL3A 2EHCA 2QBUA 2E17A 2Z6RA 2P6KA 2ENIA 2OWGA 2P6DA 2EK7A 2ZVBA 2E07A 2EJZA 2DXXA 2EKAA 2YBQA 3ND1A 2PB4A 2OWKA 2E4RA 1PJSA 2PCAA 2HUVA 2PCKA 2DXVA 3KWPA 2P9DA 1CBFA 2PCMA 2HR8A 2P5FA 2ELEA 2EGBA 2EEQA 2EMRA 1V9AA 2EK4A 2DSIA 2DXWA 2PCHA 3NUTA 2ZVCA 2DV3A 2E4NA 3HH1A 1WDEA 2DEKA 2ED5A 2E16A 5HW4A 2HUTA 3NEIA 2E8QA 2E0NA 2EH2A 2PCGA 2EHLA 2EK2A 2EN5A 3FFYA 2P5CA 2NPNA 2P6LA 2ED3A 2EGLA 2DV7A 2EL0A 2E08A 2EH4A 2EH5A 2DV4A 2E8HA 2E7RA 2HUXA 3FQ6A 1VE2A 2P2XA 1WNGA 3NDCA 1WYZA 2E8RA 4E16A 2EMUA 2CBFA 3I4TA 2OWFA 1PJTA 2PB6A 2EL1A 2E8SA 2PCIA 2DSGA 2ELDA 2OWVA 2DSHA 2EK3A 2DV5A 2PB5A 2YBOA 2HUQA 1VA0A 1PJQA 1VCEA 2EJJA 2EL2A 2EGSA 2OWUA 2E15A 1VHVA 2E0KA
chains in the Genus database with same CATH superfamily
3LMMA 2BB3A 2P6IA 1S4DA 2EJKA 2EL3A 4MV0A 2EHCA 2QBUA 2E17A 2Z6RA 2P6KA 2ENIA 2OWGA 2P6DA 2EK7A 2ZVBA 2E07A 3ZGNA 2EJZA 2DXXA 2EKAA 2YBQA 3ND1A 2PB4A 2OWKA 3SZUA 2E4RA 1PJSA 2PCAA 2HUVA 2PCKA 2DXVA 3KELA 3KWPA 2P9DA 1CBFA 2PCMA 4H4CA 3ZGLA 2HR8A 2P5FA 4EB3A 2ELEA 3UTDA 2KYYA 2EGBA 2EEQA 2EMRA 1V9AA 3SZLA 3DNFA 3KE9A 2EK4A 2DSIA 2DXWA 3UV7A 3KE8A 2PCHA 3T0FA 3NUTA 2ZVCA 2DV3A 2E4NA 3HH1A 3KEMA 1WDEA 2DEKA 4H4DA 2ED5A 3T0GA 3UV3A 2E16A 5HW4A 2HUTA 3NEIA 2E8QA 2E0NA 2EH2A 2PCGA 2EHLA 2EK2A 4MV5A 3UV6A 4H4EA 2EN5A 3FFYA 2P5CA 3KEFA 3URKA 2NPNA 3F7TA 2P6LA 2ED3A 2EGLA 2DV7A 2EL0A 2E08A 2EH4A 2EH5A 4MUXA 2DV4A 2E8HA 2E7RA 2HUXA 3FQ6A 1VE2A 2P2XA 1WNGA 3NDCA 3UWMA 1WYZA 2E8RA 4E16A 2EMUA 2CBFA 3UTCA 3I4TA 2OWFA 1PJTA 2PB6A 2EL1A 2E8SA 2PCIA 2DSGA 2ELDA 2OWVA 2DSHA 2EK3A 2DV5A 2PB5A 2YBOA 2HUQA 1VA0A 1PJQA 4MUYA 1VCEA 2EJJA 2EL2A 2EGSA 2OWUA 3SZOA 3TIXB 2E15A 1VHVA 2E0KA 4N7BA
chains in the Genus database with same CATH topology
3LMMA 2BB3A 2P6IA 1S4DA 2EJKA 2EL3A 4MV0A 2EHCA 2QBUA 2E17A 2Z6RA 2P6KA 2ENIA 2OWGA 2P6DA 2EK7A 2ZVBA 2E07A 3ZGNA 2EJZA 2DXXA 2EKAA 2YBQA 3ND1A 2PB4A 2OWKA 3SZUA 2E4RA 1PJSA 2PCAA 2HUVA 2PCKA 2DXVA 3KELA 3KWPA 2P9DA 1CBFA 2PCMA 4H4CA 3ZGLA 2HR8A 2P5FA 4EB3A 2ELEA 3UTDA 2KYYA 2EGBA 2EEQA 2EMRA 1V9AA 3SZLA 3DNFA 3KE9A 2EK4A 2DSIA 2DXWA 3UV7A 3KE8A 2PCHA 3T0FA 3NUTA 2ZVCA 2DV3A 2E4NA 3HH1A 3KEMA 1WDEA 2DEKA 4H4DA 2ED5A 3T0GA 3UV3A 2E16A 5HW4A 2HUTA 3NEIA 2E8QA 2E0NA 2EH2A 2PCGA 2EHLA 2EK2A 4MV5A 3UV6A 4H4EA 2EN5A 3FFYA 2P5CA 3KEFA 3URKA 2NPNA 3F7TA 2P6LA 2ED3A 2EGLA 2DV7A 2EL0A 2E08A 2EH4A 2EH5A 4MUXA 2DV4A 2E8HA 2E7RA 2HUXA 3FQ6A 1VE2A 2P2XA 1WNGA 3NDCA 3UWMA 1WYZA 2E8RA 4E16A 2EMUA 2CBFA 3UTCA 3I4TA 2OWFA 1PJTA 2PB6A 2EL1A 2E8SA 2PCIA 2DSGA 2ELDA 2OWVA 2DSHA 2EK3A 2DV5A 2PB5A 2YBOA 2HUQA 1VA0A 1PJQA 4MUYA 1VCEA 2EJJA 2EL2A 2EGSA 2OWUA 3SZOA 3TIXB 2E15A 1VHVA 2E0KA 4N7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BB3 A;  2P6I A;  1S4D A;  2EJK A;  2EL3 A;  2EHC A;  2QBU A;  2E17 A;  2Z6R A;  2P6K A;  2ENI A;  2OWG A;  2P6D A;  2EK7 A;  2ZVB A;  2E07 A;  2EJZ A;  2DXX A;  2EKA A;  2YBQ A;  3ND1 A;  2PB4 A;  2OWK A;  2E4R A;  1PJS A;  2PCA A;  2HUV A;  2PCK A;  2DXV A;  3KWP A;  2P9D A;  1CBF A;  2PCM A;  2HR8 A;  2P5F A;  2ELE A;  2EGB A;  2EEQ A;  2EMR A;  1V9A A;  2EK4 A;  2DSI A;  2DXW A;  2PCH A;  3NUT A;  2ZVC A;  2DV3 A;  2E4N A;  3HH1 A;  1WDE A;  2DEK A;  2ED5 A;  2E16 A;  5HW4 A;  2HUT A;  3NEI A;  2E8Q A;  2E0N A;  2EH2 A;  2PCG A;  2EHL A;  2EK2 A;  2EN5 A;  3FFY A;  2P5C A;  2NPN A;  2P6L A;  2ED3 A;  2EGL A;  2DV7 A;  2EL0 A;  2E08 A;  2EH4 A;  2EH5 A;  2DV4 A;  2E8H A;  2E7R A;  2HUX A;  3FQ6 A;  1VE2 A;  2P2X A;  1WNG A;  3NDC A;  1WYZ A;  2E8R A;  4E16 A;  2EMU A;  2CBF A;  3I4T A;  2OWF A;  1PJT A;  2PB6 A;  2EL1 A;  2E8S A;  2PCI A;  2DSG A;  2ELD A;  2OWV A;  2DSH A;  2EK3 A;  2DV5 A;  2PB5 A;  2YBO A;  2HUQ A;  1VA0 A;  1PJQ A;  1VCE A;  2EJJ A;  2EL2 A;  2EGS A;  2OWU A;  2E15 A;  1VHV A;  2E0K A; 
#chains in the Genus database with same CATH topology
 3LMM A;  2BB3 A;  2P6I A;  1S4D A;  2EJK A;  2EL3 A;  4MV0 A;  2EHC A;  2QBU A;  2E17 A;  2Z6R A;  2P6K A;  2ENI A;  2OWG A;  2P6D A;  2EK7 A;  2ZVB A;  2E07 A;  3ZGN A;  2EJZ A;  2DXX A;  2EKA A;  2YBQ A;  3ND1 A;  2PB4 A;  2OWK A;  3SZU A;  2E4R A;  1PJS A;  2PCA A;  2HUV A;  2PCK A;  2DXV A;  3KEL A;  3KWP A;  2P9D A;  1CBF A;  2PCM A;  4H4C A;  3ZGL A;  2HR8 A;  2P5F A;  4EB3 A;  2ELE A;  3UTD A;  2KYY A;  2EGB A;  2EEQ A;  2EMR A;  1V9A A;  3SZL A;  3DNF A;  3KE9 A;  2EK4 A;  2DSI A;  2DXW A;  3UV7 A;  3KE8 A;  2PCH A;  3T0F A;  3NUT A;  2ZVC A;  2DV3 A;  2E4N A;  3HH1 A;  3KEM A;  1WDE A;  2DEK A;  4H4D A;  2ED5 A;  3T0G A;  3UV3 A;  2E16 A;  5HW4 A;  2HUT A;  3NEI A;  2E8Q A;  2E0N A;  2EH2 A;  2PCG A;  2EHL A;  2EK2 A;  4MV5 A;  3UV6 A;  4H4E A;  2EN5 A;  3FFY A;  2P5C A;  3KEF A;  3URK A;  2NPN A;  3F7T A;  2P6L A;  2ED3 A;  2EGL A;  2DV7 A;  2EL0 A;  2E08 A;  2EH4 A;  2EH5 A;  4MUX A;  2DV4 A;  2E8H A;  2E7R A;  2HUX A;  3FQ6 A;  1VE2 A;  2P2X A;  1WNG A;  3NDC A;  3UWM A;  1WYZ A;  2E8R A;  4E16 A;  2EMU A;  2CBF A;  3UTC A;  3I4T A;  2OWF A;  1PJT A;  2PB6 A;  2EL1 A;  2E8S A;  2PCI A;  2DSG A;  2ELD A;  2OWV A;  2DSH A;  2EK3 A;  2DV5 A;  2PB5 A;  2YBO A;  2HUQ A;  1VA0 A;  1PJQ A;  4MUY A;  1VCE A;  2EJJ A;  2EL2 A;  2EGS A;  2OWU A;  3SZO A;  3TIX B;  2E15 A;  1VHV A;  2E0K A;  4N7B A; 
#chains in the Genus database with same CATH homology
 3LMM A;  2BB3 A;  2P6I A;  1S4D A;  2EJK A;  2EL3 A;  4MV0 A;  2EHC A;  2QBU A;  2E17 A;  2Z6R A;  2P6K A;  2ENI A;  2OWG A;  2P6D A;  2EK7 A;  2ZVB A;  2E07 A;  3ZGN A;  2EJZ A;  2DXX A;  2EKA A;  2YBQ A;  3ND1 A;  2PB4 A;  2OWK A;  3SZU A;  2E4R A;  1PJS A;  2PCA A;  2HUV A;  2PCK A;  2DXV A;  3KEL A;  3KWP A;  2P9D A;  1CBF A;  2PCM A;  4H4C A;  3ZGL A;  2HR8 A;  2P5F A;  4EB3 A;  2ELE A;  3UTD A;  2KYY A;  2EGB A;  2EEQ A;  2EMR A;  1V9A A;  3SZL A;  3DNF A;  3KE9 A;  2EK4 A;  2DSI A;  2DXW A;  3UV7 A;  3KE8 A;  2PCH A;  3T0F A;  3NUT A;  2ZVC A;  2DV3 A;  2E4N A;  3HH1 A;  3KEM A;  1WDE A;  2DEK A;  4H4D A;  2ED5 A;  3T0G A;  3UV3 A;  2E16 A;  5HW4 A;  2HUT A;  3NEI A;  2E8Q A;  2E0N A;  2EH2 A;  2PCG A;  2EHL A;  2EK2 A;  4MV5 A;  3UV6 A;  4H4E A;  2EN5 A;  3FFY A;  2P5C A;  3KEF A;  3URK A;  2NPN A;  3F7T A;  2P6L A;  2ED3 A;  2EGL A;  2DV7 A;  2EL0 A;  2E08 A;  2EH4 A;  2EH5 A;  4MUX A;  2DV4 A;  2E8H A;  2E7R A;  2HUX A;  3FQ6 A;  1VE2 A;  2P2X A;  1WNG A;  3NDC A;  3UWM A;  1WYZ A;  2E8R A;  4E16 A;  2EMU A;  2CBF A;  3UTC A;  3I4T A;  2OWF A;  1PJT A;  2PB6 A;  2EL1 A;  2E8S A;  2PCI A;  2DSG A;  2ELD A;  2OWV A;  2DSH A;  2EK3 A;  2DV5 A;  2PB5 A;  2YBO A;  2HUQ A;  1VA0 A;  1PJQ A;  4MUY A;  1VCE A;  2EJJ A;  2EL2 A;  2EGS A;  2OWU A;  3SZO A;  3TIX B;  2E15 A;  1VHV A;  2E0K A;  4N7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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