2EL1A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l44m)
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTMGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L44M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 79
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el1A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el1A01
2ELDA 2EL1A 5HW4A 2P6DA 2EJKA 1S4DA 2PCHA 3FQ6A 2BB3A 2EH4A 2EK4A 2EHLA 2PCIA 2PCAA 2OWGA 2ED5A 4E16A 2E0NA 2DEKA 2E7RA 2HUQA 2E8RA 2DXWA 2EL3A 2OWKA 2ZVCA 1WDEA 2E4RA 2HUTA 2QBUA 2E16A 2DXVA 2EH2A 1CBFA 2E08A 2EL2A 2PCGA 2ED3A 2P9DA 1WYZA 3ND1A 2E8QA 2NPNA 2P5CA 2ELEA 2DSHA 2P6KA 1VA0A 1VHVA 2E4NA 2CBFA 2E15A 2P6LA 2HR8A 2E07A 2EL0A 2DV5A 3NEIA 3NUTA 2E17A 3HH1A 2PCMA 2YBOA 2DV3A 2E8SA 2EHCA 2EH5A 2ZVBA 2DV4A 2HUXA 2EEQA 2EMRA 2DSGA 2EK7A 2PCKA 2EGSA 1PJTA 2EKAA 2HUVA 2DV7A 2EJZA 3KWPA 2ENIA 2P6IA 1VCEA 2P2XA 3I4TA 2PB5A 2EGLA 3NDCA 2EK3A 1WNGA 1PJQA 1VE2A 2EN5A 2EK2A 2PB6A 1PJSA 2DXXA 2P5FA 1V9AA 3FFYA 2OWVA 2PB4A 2OWUA 2EJJA 2E0KA 2DSIA 2E8HA 2Z6RA 2EGBA 2YBQA 2OWFA 2EMUA
chains in the Genus database with same CATH superfamily
2ELDA 2EL1A 5HW4A 2P6DA 2EJKA 4MUYA 1S4DA 2PCHA 3FQ6A 2BB3A 2EH4A 2EK4A 2EHLA 2PCIA 3UTDA 2PCAA 2OWGA 2KYYA 2ED5A 4E16A 4N7BA 2E0NA 2DEKA 2E7RA 2HUQA 2E8RA 2DXWA 2EL3A 2OWKA 3UV3A 3KELA 2ZVCA 1WDEA 2E4RA 2HUTA 2QBUA 3UV7A 4H4CA 2E16A 2DXVA 2EH2A 1CBFA 2E08A 3UV6A 2EL2A 3DNFA 2PCGA 2ED3A 2P9DA 1WYZA 3ND1A 4MV0A 2E8QA 2NPNA 2P5CA 2ELEA 2DSHA 2P6KA 1VA0A 1VHVA 2E4NA 2CBFA 2E15A 3LMMA 2P6LA 2HR8A 3T0FA 2E07A 2EL0A 2DV5A 3NEIA 3NUTA 2E17A 3HH1A 2PCMA 2YBOA 2DV3A 2E8SA 2EHCA 2EH5A 2ZVBA 3UTCA 2DV4A 3SZLA 3SZOA 3URKA 2HUXA 2EEQA 3SZUA 2EMRA 2DSGA 2EK7A 2PCKA 2EGSA 1PJTA 2EKAA 2HUVA 2DV7A 2EJZA 3KWPA 3KEMA 2ENIA 2P6IA 1VCEA 3KEFA 2P2XA 4H4DA 3I4TA 2PB5A 2EGLA 3NDCA 2EK3A 1WNGA 3KE8A 3T0GA 3ZGNA 1PJQA 4MV5A 1VE2A 2EN5A 3ZGLA 2EK2A 2PB6A 1PJSA 3UWMA 4MUXA 2DXXA 2P5FA 4EB3A 1V9AA 3FFYA 3TIXB 2OWVA 2PB4A 4H4EA 2OWUA 2EJJA 2E0KA 2DSIA 2E8HA 2Z6RA 2EGBA 3F7TA 2YBQA 2OWFA 2EMUA 3KE9A
chains in the Genus database with same CATH topology
2ELDA 2EL1A 5HW4A 2P6DA 2EJKA 4MUYA 1S4DA 2PCHA 3FQ6A 2BB3A 2EH4A 2EK4A 2EHLA 2PCIA 3UTDA 2PCAA 2OWGA 2KYYA 2ED5A 4E16A 4N7BA 2E0NA 2DEKA 2E7RA 2HUQA 2E8RA 2DXWA 2EL3A 2OWKA 3UV3A 3KELA 2ZVCA 1WDEA 2E4RA 2HUTA 2QBUA 3UV7A 4H4CA 2E16A 2DXVA 2EH2A 1CBFA 2E08A 3UV6A 2EL2A 3DNFA 2PCGA 2ED3A 2P9DA 1WYZA 3ND1A 4MV0A 2E8QA 2NPNA 2P5CA 2ELEA 2DSHA 2P6KA 1VA0A 1VHVA 2E4NA 2CBFA 2E15A 3LMMA 2P6LA 2HR8A 3T0FA 2E07A 2EL0A 2DV5A 3NEIA 3NUTA 2E17A 3HH1A 2PCMA 2YBOA 2DV3A 2E8SA 2EHCA 2EH5A 2ZVBA 3UTCA 2DV4A 3SZLA 3SZOA 3URKA 2HUXA 2EEQA 3SZUA 2EMRA 2DSGA 2EK7A 2PCKA 2EGSA 1PJTA 2EKAA 2HUVA 2DV7A 2EJZA 3KWPA 3KEMA 2ENIA 2P6IA 1VCEA 3KEFA 2P2XA 4H4DA 3I4TA 2PB5A 2EGLA 3NDCA 2EK3A 1WNGA 3KE8A 3T0GA 3ZGNA 1PJQA 4MV5A 1VE2A 2EN5A 3ZGLA 2EK2A 2PB6A 1PJSA 3UWMA 4MUXA 2DXXA 2P5FA 4EB3A 1V9AA 3FFYA 3TIXB 2OWVA 2PB4A 4H4EA 2OWUA 2EJJA 2E0KA 2DSIA 2E8HA 2Z6RA 2EGBA 3F7TA 2YBQA 2OWFA 2EMUA 3KE9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ELD A;  2EL1 A;  5HW4 A;  2P6D A;  2EJK A;  1S4D A;  2PCH A;  3FQ6 A;  2BB3 A;  2EH4 A;  2EK4 A;  2EHL A;  2PCI A;  2PCA A;  2OWG A;  2ED5 A;  4E16 A;  2E0N A;  2DEK A;  2E7R A;  2HUQ A;  2E8R A;  2DXW A;  2EL3 A;  2OWK A;  2ZVC A;  1WDE A;  2E4R A;  2HUT A;  2QBU A;  2E16 A;  2DXV A;  2EH2 A;  1CBF A;  2E08 A;  2EL2 A;  2PCG A;  2ED3 A;  2P9D A;  1WYZ A;  3ND1 A;  2E8Q A;  2NPN A;  2P5C A;  2ELE A;  2DSH A;  2P6K A;  1VA0 A;  1VHV A;  2E4N A;  2CBF A;  2E15 A;  2P6L A;  2HR8 A;  2E07 A;  2EL0 A;  2DV5 A;  3NEI A;  3NUT A;  2E17 A;  3HH1 A;  2PCM A;  2YBO A;  2DV3 A;  2E8S A;  2EHC A;  2EH5 A;  2ZVB A;  2DV4 A;  2HUX A;  2EEQ A;  2EMR A;  2DSG A;  2EK7 A;  2PCK A;  2EGS A;  1PJT A;  2EKA A;  2HUV A;  2DV7 A;  2EJZ A;  3KWP A;  2ENI A;  2P6I A;  1VCE A;  2P2X A;  3I4T A;  2PB5 A;  2EGL A;  3NDC A;  2EK3 A;  1WNG A;  1PJQ A;  1VE2 A;  2EN5 A;  2EK2 A;  2PB6 A;  1PJS A;  2DXX A;  2P5F A;  1V9A A;  3FFY A;  2OWV A;  2PB4 A;  2OWU A;  2EJJ A;  2E0K A;  2DSI A;  2E8H A;  2Z6R A;  2EGB A;  2YBQ A;  2OWF A;  2EMU A; 
#chains in the Genus database with same CATH topology
 2ELD A;  2EL1 A;  5HW4 A;  2P6D A;  2EJK A;  4MUY A;  1S4D A;  2PCH A;  3FQ6 A;  2BB3 A;  2EH4 A;  2EK4 A;  2EHL A;  2PCI A;  3UTD A;  2PCA A;  2OWG A;  2KYY A;  2ED5 A;  4E16 A;  4N7B A;  2E0N A;  2DEK A;  2E7R A;  2HUQ A;  2E8R A;  2DXW A;  2EL3 A;  2OWK A;  3UV3 A;  3KEL A;  2ZVC A;  1WDE A;  2E4R A;  2HUT A;  2QBU A;  3UV7 A;  4H4C A;  2E16 A;  2DXV A;  2EH2 A;  1CBF A;  2E08 A;  3UV6 A;  2EL2 A;  3DNF A;  2PCG A;  2ED3 A;  2P9D A;  1WYZ A;  3ND1 A;  4MV0 A;  2E8Q A;  2NPN A;  2P5C A;  2ELE A;  2DSH A;  2P6K A;  1VA0 A;  1VHV A;  2E4N A;  2CBF A;  2E15 A;  3LMM A;  2P6L A;  2HR8 A;  3T0F A;  2E07 A;  2EL0 A;  2DV5 A;  3NEI A;  3NUT A;  2E17 A;  3HH1 A;  2PCM A;  2YBO A;  2DV3 A;  2E8S A;  2EHC A;  2EH5 A;  2ZVB A;  3UTC A;  2DV4 A;  3SZL A;  3SZO A;  3URK A;  2HUX A;  2EEQ A;  3SZU A;  2EMR A;  2DSG A;  2EK7 A;  2PCK A;  2EGS A;  1PJT A;  2EKA A;  2HUV A;  2DV7 A;  2EJZ A;  3KWP A;  3KEM A;  2ENI A;  2P6I A;  1VCE A;  3KEF A;  2P2X A;  4H4D A;  3I4T A;  2PB5 A;  2EGL A;  3NDC A;  2EK3 A;  1WNG A;  3KE8 A;  3T0G A;  3ZGN A;  1PJQ A;  4MV5 A;  1VE2 A;  2EN5 A;  3ZGL A;  2EK2 A;  2PB6 A;  1PJS A;  3UWM A;  4MUX A;  2DXX A;  2P5F A;  4EB3 A;  1V9A A;  3FFY A;  3TIX B;  2OWV A;  2PB4 A;  4H4E A;  2OWU A;  2EJJ A;  2E0K A;  2DSI A;  2E8H A;  2Z6R A;  2EGB A;  3F7T A;  2YBQ A;  2OWF A;  2EMU A;  3KE9 A; 
#chains in the Genus database with same CATH homology
 2ELD A;  2EL1 A;  5HW4 A;  2P6D A;  2EJK A;  4MUY A;  1S4D A;  2PCH A;  3FQ6 A;  2BB3 A;  2EH4 A;  2EK4 A;  2EHL A;  2PCI A;  3UTD A;  2PCA A;  2OWG A;  2KYY A;  2ED5 A;  4E16 A;  4N7B A;  2E0N A;  2DEK A;  2E7R A;  2HUQ A;  2E8R A;  2DXW A;  2EL3 A;  2OWK A;  3UV3 A;  3KEL A;  2ZVC A;  1WDE A;  2E4R A;  2HUT A;  2QBU A;  3UV7 A;  4H4C A;  2E16 A;  2DXV A;  2EH2 A;  1CBF A;  2E08 A;  3UV6 A;  2EL2 A;  3DNF A;  2PCG A;  2ED3 A;  2P9D A;  1WYZ A;  3ND1 A;  4MV0 A;  2E8Q A;  2NPN A;  2P5C A;  2ELE A;  2DSH A;  2P6K A;  1VA0 A;  1VHV A;  2E4N A;  2CBF A;  2E15 A;  3LMM A;  2P6L A;  2HR8 A;  3T0F A;  2E07 A;  2EL0 A;  2DV5 A;  3NEI A;  3NUT A;  2E17 A;  3HH1 A;  2PCM A;  2YBO A;  2DV3 A;  2E8S A;  2EHC A;  2EH5 A;  2ZVB A;  3UTC A;  2DV4 A;  3SZL A;  3SZO A;  3URK A;  2HUX A;  2EEQ A;  3SZU A;  2EMR A;  2DSG A;  2EK7 A;  2PCK A;  2EGS A;  1PJT A;  2EKA A;  2HUV A;  2DV7 A;  2EJZ A;  3KWP A;  3KEM A;  2ENI A;  2P6I A;  1VCE A;  3KEF A;  2P2X A;  4H4D A;  3I4T A;  2PB5 A;  2EGL A;  3NDC A;  2EK3 A;  1WNG A;  3KE8 A;  3T0G A;  3ZGN A;  1PJQ A;  4MV5 A;  1VE2 A;  2EN5 A;  3ZGL A;  2EK2 A;  2PB6 A;  1PJS A;  3UWM A;  4MUX A;  2DXX A;  2P5F A;  4EB3 A;  1V9A A;  3FFY A;  3TIX B;  2OWV A;  2PB4 A;  4H4E A;  2OWU A;  2EJJ A;  2E0K A;  2DSI A;  2E8H A;  2Z6R A;  2EGB A;  3F7T A;  2YBQ A;  2OWF A;  2EMU A;  3KE9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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