2EEQA

Mutant y29m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eeqA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eeqA01
2ED5A 2DXWA 2P9DA 2DV5A 2ZVBA 2P6IA 3KWPA 1VCEA 2P2XA 2CBFA 2BB3A 2DSHA 2ED3A 2EL2A 2P6DA 1PJQA 2Z6RA 1PJTA 1WNGA 2EHCA 1V9AA 2PCIA 2DV3A 2E4RA 2EK4A 2PCAA 2QBUA 2YBQA 2EMUA 1WYZA 2ZVCA 2EJZA 3NUTA 2DSGA 2NPNA 1S4DA 2EJJA 2P5FA 2P6KA 2EGLA 2OWVA 2EGSA 2E08A 2OWGA 2EL0A 2EH4A 2P5CA 2E07A 2EK3A 2E8RA 2HUQA 3NEIA 4E16A 2HUTA 2PB5A 2DV7A 2DSIA 2E4NA 2HUXA 2P6LA 2EN5A 2E15A 5HW4A 1WDEA 2EMRA 2EEQA 2OWFA 2DV4A 1VHVA 2DXXA 2E0KA 2E8QA 2EH5A 2PB4A 2DXVA 2HR8A 1VA0A 2EL3A 2HUVA 2YBOA 3HH1A 2PCMA 2EHLA 2EK7A 2EKAA 2OWKA 1VE2A 2E8HA 3FFYA 3FQ6A 2ELDA 2PCHA 2E17A 1PJSA 3ND1A 2DEKA 2PCKA 2E16A 2PB6A 2EH2A 2EK2A 2E8SA 1CBFA 2EGBA 3I4TA 2E0NA 2PCGA 2ENIA 2EL1A 2E7RA 3NDCA 2OWUA 2EJKA 2ELEA
chains in the Genus database with same CATH superfamily
2ED5A 2DXWA 2P9DA 2DV5A 2ZVBA 2P6IA 3KWPA 1VCEA 2P2XA 2CBFA 2BB3A 2DSHA 2ED3A 2EL2A 2P6DA 4MV5A 1PJQA 2Z6RA 1PJTA 4MUYA 3KE9A 1WNGA 2EHCA 4MUXA 1V9AA 2PCIA 2DV3A 2E4RA 2EK4A 4EB3A 2PCAA 2QBUA 2YBQA 2EMUA 1WYZA 2ZVCA 2EJZA 3NUTA 2DSGA 2NPNA 1S4DA 2EJJA 2P5FA 4H4DA 2P6KA 4H4CA 2EGLA 3URKA 3UV6A 2OWVA 2EGSA 2E08A 3ZGNA 3TIXB 2OWGA 2EL0A 2EH4A 2P5CA 2E07A 2EK3A 3SZLA 2E8RA 2HUQA 2KYYA 3T0GA 3NEIA 4E16A 2HUTA 4N7BA 2PB5A 3KEMA 2DV7A 2DSIA 4MV0A 2E4NA 2HUXA 2P6LA 2EN5A 2E15A 5HW4A 1WDEA 3KELA 2EMRA 3F7TA 2EEQA 3KEFA 2OWFA 2DV4A 1VHVA 2DXXA 2E0KA 2E8QA 2EH5A 2PB4A 2DXVA 2HR8A 1VA0A 2EL3A 2HUVA 3T0FA 3UV3A 3UTDA 2YBOA 3HH1A 2PCMA 2EHLA 3UTCA 2EK7A 2EKAA 2OWKA 3KE8A 3LMMA 1VE2A 2E8HA 3FFYA 3FQ6A 3SZUA 2ELDA 3ZGLA 2PCHA 2E17A 1PJSA 3ND1A 2DEKA 3UV7A 2PCKA 2E16A 2PB6A 2EH2A 2EK2A 3UWMA 2E8SA 1CBFA 2EGBA 3DNFA 3SZOA 3I4TA 2E0NA 2PCGA 2ENIA 2EL1A 4H4EA 2E7RA 3NDCA 2OWUA 2EJKA 2ELEA
chains in the Genus database with same CATH topology
2ED5A 2DXWA 2P9DA 2DV5A 2ZVBA 2P6IA 3KWPA 1VCEA 2P2XA 2CBFA 2BB3A 2DSHA 2ED3A 2EL2A 2P6DA 4MV5A 1PJQA 2Z6RA 1PJTA 4MUYA 3KE9A 1WNGA 2EHCA 4MUXA 1V9AA 2PCIA 2DV3A 2E4RA 2EK4A 4EB3A 2PCAA 2QBUA 2YBQA 2EMUA 1WYZA 2ZVCA 2EJZA 3NUTA 2DSGA 2NPNA 1S4DA 2EJJA 2P5FA 4H4DA 2P6KA 4H4CA 2EGLA 3URKA 3UV6A 2OWVA 2EGSA 2E08A 3ZGNA 3TIXB 2OWGA 2EL0A 2EH4A 2P5CA 2E07A 2EK3A 3SZLA 2E8RA 2HUQA 2KYYA 3T0GA 3NEIA 4E16A 2HUTA 4N7BA 2PB5A 3KEMA 2DV7A 2DSIA 4MV0A 2E4NA 2HUXA 2P6LA 2EN5A 2E15A 5HW4A 1WDEA 3KELA 2EMRA 3F7TA 2EEQA 3KEFA 2OWFA 2DV4A 1VHVA 2DXXA 2E0KA 2E8QA 2EH5A 2PB4A 2DXVA 2HR8A 1VA0A 2EL3A 2HUVA 3T0FA 3UV3A 3UTDA 2YBOA 3HH1A 2PCMA 2EHLA 3UTCA 2EK7A 2EKAA 2OWKA 3KE8A 3LMMA 1VE2A 2E8HA 3FFYA 3FQ6A 3SZUA 2ELDA 3ZGLA 2PCHA 2E17A 1PJSA 3ND1A 2DEKA 3UV7A 2PCKA 2E16A 2PB6A 2EH2A 2EK2A 3UWMA 2E8SA 1CBFA 2EGBA 3DNFA 3SZOA 3I4TA 2E0NA 2PCGA 2ENIA 2EL1A 4H4EA 2E7RA 3NDCA 2OWUA 2EJKA 2ELEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ED5 A;  2DXW A;  2P9D A;  2DV5 A;  2ZVB A;  2P6I A;  3KWP A;  1VCE A;  2P2X A;  2CBF A;  2BB3 A;  2DSH A;  2ED3 A;  2EL2 A;  2P6D A;  1PJQ A;  2Z6R A;  1PJT A;  1WNG A;  2EHC A;  1V9A A;  2PCI A;  2DV3 A;  2E4R A;  2EK4 A;  2PCA A;  2QBU A;  2YBQ A;  2EMU A;  1WYZ A;  2ZVC A;  2EJZ A;  3NUT A;  2DSG A;  2NPN A;  1S4D A;  2EJJ A;  2P5F A;  2P6K A;  2EGL A;  2OWV A;  2EGS A;  2E08 A;  2OWG A;  2EL0 A;  2EH4 A;  2P5C A;  2E07 A;  2EK3 A;  2E8R A;  2HUQ A;  3NEI A;  4E16 A;  2HUT A;  2PB5 A;  2DV7 A;  2DSI A;  2E4N A;  2HUX A;  2P6L A;  2EN5 A;  2E15 A;  5HW4 A;  1WDE A;  2EMR A;  2EEQ A;  2OWF A;  2DV4 A;  1VHV A;  2DXX A;  2E0K A;  2E8Q A;  2EH5 A;  2PB4 A;  2DXV A;  2HR8 A;  1VA0 A;  2EL3 A;  2HUV A;  2YBO A;  3HH1 A;  2PCM A;  2EHL A;  2EK7 A;  2EKA A;  2OWK A;  1VE2 A;  2E8H A;  3FFY A;  3FQ6 A;  2ELD A;  2PCH A;  2E17 A;  1PJS A;  3ND1 A;  2DEK A;  2PCK A;  2E16 A;  2PB6 A;  2EH2 A;  2EK2 A;  2E8S A;  1CBF A;  2EGB A;  3I4T A;  2E0N A;  2PCG A;  2ENI A;  2EL1 A;  2E7R A;  3NDC A;  2OWU A;  2EJK A;  2ELE A; 
#chains in the Genus database with same CATH topology
 2ED5 A;  2DXW A;  2P9D A;  2DV5 A;  2ZVB A;  2P6I A;  3KWP A;  1VCE A;  2P2X A;  2CBF A;  2BB3 A;  2DSH A;  2ED3 A;  2EL2 A;  2P6D A;  4MV5 A;  1PJQ A;  2Z6R A;  1PJT A;  4MUY A;  3KE9 A;  1WNG A;  2EHC A;  4MUX A;  1V9A A;  2PCI A;  2DV3 A;  2E4R A;  2EK4 A;  4EB3 A;  2PCA A;  2QBU A;  2YBQ A;  2EMU A;  1WYZ A;  2ZVC A;  2EJZ A;  3NUT A;  2DSG A;  2NPN A;  1S4D A;  2EJJ A;  2P5F A;  4H4D A;  2P6K A;  4H4C A;  2EGL A;  3URK A;  3UV6 A;  2OWV A;  2EGS A;  2E08 A;  3ZGN A;  3TIX B;  2OWG A;  2EL0 A;  2EH4 A;  2P5C A;  2E07 A;  2EK3 A;  3SZL A;  2E8R A;  2HUQ A;  2KYY A;  3T0G A;  3NEI A;  4E16 A;  2HUT A;  4N7B A;  2PB5 A;  3KEM A;  2DV7 A;  2DSI A;  4MV0 A;  2E4N A;  2HUX A;  2P6L A;  2EN5 A;  2E15 A;  5HW4 A;  1WDE A;  3KEL A;  2EMR A;  3F7T A;  2EEQ A;  3KEF A;  2OWF A;  2DV4 A;  1VHV A;  2DXX A;  2E0K A;  2E8Q A;  2EH5 A;  2PB4 A;  2DXV A;  2HR8 A;  1VA0 A;  2EL3 A;  2HUV A;  3T0F A;  3UV3 A;  3UTD A;  2YBO A;  3HH1 A;  2PCM A;  2EHL A;  3UTC A;  2EK7 A;  2EKA A;  2OWK A;  3KE8 A;  3LMM A;  1VE2 A;  2E8H A;  3FFY A;  3FQ6 A;  3SZU A;  2ELD A;  3ZGL A;  2PCH A;  2E17 A;  1PJS A;  3ND1 A;  2DEK A;  3UV7 A;  2PCK A;  2E16 A;  2PB6 A;  2EH2 A;  2EK2 A;  3UWM A;  2E8S A;  1CBF A;  2EGB A;  3DNF A;  3SZO A;  3I4T A;  2E0N A;  2PCG A;  2ENI A;  2EL1 A;  4H4E A;  2E7R A;  3NDC A;  2OWU A;  2EJK A;  2ELE A; 
#chains in the Genus database with same CATH homology
 2ED5 A;  2DXW A;  2P9D A;  2DV5 A;  2ZVB A;  2P6I A;  3KWP A;  1VCE A;  2P2X A;  2CBF A;  2BB3 A;  2DSH A;  2ED3 A;  2EL2 A;  2P6D A;  4MV5 A;  1PJQ A;  2Z6R A;  1PJT A;  4MUY A;  3KE9 A;  1WNG A;  2EHC A;  4MUX A;  1V9A A;  2PCI A;  2DV3 A;  2E4R A;  2EK4 A;  4EB3 A;  2PCA A;  2QBU A;  2YBQ A;  2EMU A;  1WYZ A;  2ZVC A;  2EJZ A;  3NUT A;  2DSG A;  2NPN A;  1S4D A;  2EJJ A;  2P5F A;  4H4D A;  2P6K A;  4H4C A;  2EGL A;  3URK A;  3UV6 A;  2OWV A;  2EGS A;  2E08 A;  3ZGN A;  3TIX B;  2OWG A;  2EL0 A;  2EH4 A;  2P5C A;  2E07 A;  2EK3 A;  3SZL A;  2E8R A;  2HUQ A;  2KYY A;  3T0G A;  3NEI A;  4E16 A;  2HUT A;  4N7B A;  2PB5 A;  3KEM A;  2DV7 A;  2DSI A;  4MV0 A;  2E4N A;  2HUX A;  2P6L A;  2EN5 A;  2E15 A;  5HW4 A;  1WDE A;  3KEL A;  2EMR A;  3F7T A;  2EEQ A;  3KEF A;  2OWF A;  2DV4 A;  1VHV A;  2DXX A;  2E0K A;  2E8Q A;  2EH5 A;  2PB4 A;  2DXV A;  2HR8 A;  1VA0 A;  2EL3 A;  2HUV A;  3T0F A;  3UV3 A;  3UTD A;  2YBO A;  3HH1 A;  2PCM A;  2EHL A;  3UTC A;  2EK7 A;  2EKA A;  2OWK A;  3KE8 A;  3LMM A;  1VE2 A;  2E8H A;  3FFY A;  3FQ6 A;  3SZU A;  2ELD A;  3ZGL A;  2PCH A;  2E17 A;  1PJS A;  3ND1 A;  2DEK A;  3UV7 A;  2PCK A;  2E16 A;  2PB6 A;  2EH2 A;  2EK2 A;  3UWM A;  2E8S A;  1CBF A;  2EGB A;  3DNF A;  3SZO A;  3I4T A;  2E0N A;  2PCG A;  2ENI A;  2EL1 A;  4H4E A;  2E7R A;  3NDC A;  2OWU A;  2EJK A;  2ELE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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