2EEQA

Mutant y29m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eeqA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eeqA01
2ELDA 2OWFA 2P5FA 4E16A 2E4RA 2EH5A 2PCGA 2PCIA 2EHCA 2P6KA 2Z6RA 2DXVA 3NDCA 3NEIA 2E17A 2PB6A 2EJZA 1VHVA 2E16A 2DSGA 2EL1A 2NPNA 2EGLA 2EH2A 1WDEA 2EK2A 2DSIA 2EK3A 2E8RA 1V9AA 3FFYA 2EL0A 2P2XA 2ED5A 2OWGA 1VCEA 2DSHA 2EH4A 2HUQA 2BB3A 2EJKA 2EMRA 1WYZA 2DV4A 2PCMA 2OWUA 2YBOA 2P9DA 2E15A 2DXXA 2OWVA 2ELEA 2DV7A 2EN5A 2EK4A 2HUXA 2E4NA 1PJQA 2DV5A 2E07A 1VA0A 3ND1A 2E7RA 2EEQA 2DV3A 2ED3A 1PJTA 2EJJA 2PB4A 3HH1A 1WNGA 3FQ6A 2PB5A 2EHLA 2E8SA 2E8HA 2EGBA 2EKAA 2HUVA 2QBUA 2P6LA 1CBFA 3NUTA 2E8QA 3I4TA 2E08A 2EGSA 2EMUA 2OWKA 2E0NA 2EK7A 2P6DA 2PCHA 2PCAA 2ZVCA 2EL3A 2CBFA 2HR8A 2ENIA 5HW4A 1S4DA 2P6IA 2E0KA 2EL2A 2ZVBA 1PJSA 3KWPA 2PCKA 2DEKA 2YBQA 1VE2A 2P5CA 2HUTA 2DXWA
chains in the Genus database with same CATH superfamily
2ELDA 2OWFA 3UV3A 2P5FA 4E16A 2E4RA 2EH5A 2PCGA 2PCIA 2EHCA 2P6KA 3T0FA 2Z6RA 2DXVA 3NDCA 3NEIA 3UTDA 2E17A 4H4EA 2PB6A 2EJZA 3KE8A 3KE9A 1VHVA 2E16A 2DSGA 2EL1A 2NPNA 3ZGLA 2EGLA 3UWMA 2EH2A 3ZGNA 1WDEA 2EK2A 2DSIA 2EK3A 2E8RA 3KEMA 1V9AA 3FFYA 2EL0A 2P2XA 3KELA 2ED5A 4H4DA 2OWGA 1VCEA 2DSHA 2EH4A 2HUQA 2BB3A 3SZLA 2EJKA 2EMRA 3URKA 4MV5A 1WYZA 2DV4A 2PCMA 2OWUA 2YBOA 2P9DA 2E15A 2DXXA 2OWVA 4MUXA 2ELEA 2DV7A 2EN5A 2EK4A 2HUXA 2E4NA 1PJQA 2DV5A 2E07A 1VA0A 3ND1A 3UV7A 2E7RA 3F7TA 2EEQA 2DV3A 2ED3A 1PJTA 2EJJA 2PB4A 3HH1A 1WNGA 4MUYA 3UTCA 3FQ6A 2PB5A 2EHLA 3TIXB 2E8SA 2E8HA 2EGBA 2EKAA 2HUVA 2QBUA 2P6LA 1CBFA 3NUTA 2E8QA 3I4TA 2E08A 2EGSA 3UV6A 2EMUA 2E0NA 2OWKA 4MV0A 2EK7A 4N7BA 2P6DA 4H4CA 2PCHA 2PCAA 2ZVCA 2EL3A 3LMMA 2CBFA 2HR8A 2ENIA 3T0GA 5HW4A 1S4DA 2P6IA 2E0KA 3SZUA 4EB3A 3DNFA 2KYYA 2EL2A 2ZVBA 1PJSA 3SZOA 3KWPA 2PCKA 2DEKA 2YBQA 1VE2A 2P5CA 2HUTA 2DXWA 3KEFA
chains in the Genus database with same CATH topology
2ELDA 2OWFA 3UV3A 2P5FA 4E16A 2E4RA 2EH5A 2PCGA 2PCIA 2EHCA 2P6KA 3T0FA 2Z6RA 2DXVA 3NDCA 3NEIA 3UTDA 2E17A 4H4EA 2PB6A 2EJZA 3KE8A 3KE9A 1VHVA 2E16A 2DSGA 2EL1A 2NPNA 3ZGLA 2EGLA 3UWMA 2EH2A 3ZGNA 1WDEA 2EK2A 2DSIA 2EK3A 2E8RA 3KEMA 1V9AA 3FFYA 2EL0A 2P2XA 3KELA 2ED5A 4H4DA 2OWGA 1VCEA 2DSHA 2EH4A 2HUQA 2BB3A 3SZLA 2EJKA 2EMRA 3URKA 4MV5A 1WYZA 2DV4A 2PCMA 2OWUA 2YBOA 2P9DA 2E15A 2DXXA 2OWVA 4MUXA 2ELEA 2DV7A 2EN5A 2EK4A 2HUXA 2E4NA 1PJQA 2DV5A 2E07A 1VA0A 3ND1A 3UV7A 2E7RA 3F7TA 2EEQA 2DV3A 2ED3A 1PJTA 2EJJA 2PB4A 3HH1A 1WNGA 4MUYA 3UTCA 3FQ6A 2PB5A 2EHLA 3TIXB 2E8SA 2E8HA 2EGBA 2EKAA 2HUVA 2QBUA 2P6LA 1CBFA 3NUTA 2E8QA 3I4TA 2E08A 2EGSA 3UV6A 2EMUA 2E0NA 2OWKA 4MV0A 2EK7A 4N7BA 2P6DA 4H4CA 2PCHA 2PCAA 2ZVCA 2EL3A 3LMMA 2CBFA 2HR8A 2ENIA 3T0GA 5HW4A 1S4DA 2P6IA 2E0KA 3SZUA 4EB3A 3DNFA 2KYYA 2EL2A 2ZVBA 1PJSA 3SZOA 3KWPA 2PCKA 2DEKA 2YBQA 1VE2A 2P5CA 2HUTA 2DXWA 3KEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ELD A;  2OWF A;  2P5F A;  4E16 A;  2E4R A;  2EH5 A;  2PCG A;  2PCI A;  2EHC A;  2P6K A;  2Z6R A;  2DXV A;  3NDC A;  3NEI A;  2E17 A;  2PB6 A;  2EJZ A;  1VHV A;  2E16 A;  2DSG A;  2EL1 A;  2NPN A;  2EGL A;  2EH2 A;  1WDE A;  2EK2 A;  2DSI A;  2EK3 A;  2E8R A;  1V9A A;  3FFY A;  2EL0 A;  2P2X A;  2ED5 A;  2OWG A;  1VCE A;  2DSH A;  2EH4 A;  2HUQ A;  2BB3 A;  2EJK A;  2EMR A;  1WYZ A;  2DV4 A;  2PCM A;  2OWU A;  2YBO A;  2P9D A;  2E15 A;  2DXX A;  2OWV A;  2ELE A;  2DV7 A;  2EN5 A;  2EK4 A;  2HUX A;  2E4N A;  1PJQ A;  2DV5 A;  2E07 A;  1VA0 A;  3ND1 A;  2E7R A;  2EEQ A;  2DV3 A;  2ED3 A;  1PJT A;  2EJJ A;  2PB4 A;  3HH1 A;  1WNG A;  3FQ6 A;  2PB5 A;  2EHL A;  2E8S A;  2E8H A;  2EGB A;  2EKA A;  2HUV A;  2QBU A;  2P6L A;  1CBF A;  3NUT A;  2E8Q A;  3I4T A;  2E08 A;  2EGS A;  2EMU A;  2OWK A;  2E0N A;  2EK7 A;  2P6D A;  2PCH A;  2PCA A;  2ZVC A;  2EL3 A;  2CBF A;  2HR8 A;  2ENI A;  5HW4 A;  1S4D A;  2P6I A;  2E0K A;  2EL2 A;  2ZVB A;  1PJS A;  3KWP A;  2PCK A;  2DEK A;  2YBQ A;  1VE2 A;  2P5C A;  2HUT A;  2DXW A; 
#chains in the Genus database with same CATH topology
 2ELD A;  2OWF A;  3UV3 A;  2P5F A;  4E16 A;  2E4R A;  2EH5 A;  2PCG A;  2PCI A;  2EHC A;  2P6K A;  3T0F A;  2Z6R A;  2DXV A;  3NDC A;  3NEI A;  3UTD A;  2E17 A;  4H4E A;  2PB6 A;  2EJZ A;  3KE8 A;  3KE9 A;  1VHV A;  2E16 A;  2DSG A;  2EL1 A;  2NPN A;  3ZGL A;  2EGL A;  3UWM A;  2EH2 A;  3ZGN A;  1WDE A;  2EK2 A;  2DSI A;  2EK3 A;  2E8R A;  3KEM A;  1V9A A;  3FFY A;  2EL0 A;  2P2X A;  3KEL A;  2ED5 A;  4H4D A;  2OWG A;  1VCE A;  2DSH A;  2EH4 A;  2HUQ A;  2BB3 A;  3SZL A;  2EJK A;  2EMR A;  3URK A;  4MV5 A;  1WYZ A;  2DV4 A;  2PCM A;  2OWU A;  2YBO A;  2P9D A;  2E15 A;  2DXX A;  2OWV A;  4MUX A;  2ELE A;  2DV7 A;  2EN5 A;  2EK4 A;  2HUX A;  2E4N A;  1PJQ A;  2DV5 A;  2E07 A;  1VA0 A;  3ND1 A;  3UV7 A;  2E7R A;  3F7T A;  2EEQ A;  2DV3 A;  2ED3 A;  1PJT A;  2EJJ A;  2PB4 A;  3HH1 A;  1WNG A;  4MUY A;  3UTC A;  3FQ6 A;  2PB5 A;  2EHL A;  3TIX B;  2E8S A;  2E8H A;  2EGB A;  2EKA A;  2HUV A;  2QBU A;  2P6L A;  1CBF A;  3NUT A;  2E8Q A;  3I4T A;  2E08 A;  2EGS A;  3UV6 A;  2EMU A;  2E0N A;  2OWK A;  4MV0 A;  2EK7 A;  4N7B A;  2P6D A;  4H4C A;  2PCH A;  2PCA A;  2ZVC A;  2EL3 A;  3LMM A;  2CBF A;  2HR8 A;  2ENI A;  3T0G A;  5HW4 A;  1S4D A;  2P6I A;  2E0K A;  3SZU A;  4EB3 A;  3DNF A;  2KYY A;  2EL2 A;  2ZVB A;  1PJS A;  3SZO A;  3KWP A;  2PCK A;  2DEK A;  2YBQ A;  1VE2 A;  2P5C A;  2HUT A;  2DXW A;  3KEF A; 
#chains in the Genus database with same CATH homology
 2ELD A;  2OWF A;  3UV3 A;  2P5F A;  4E16 A;  2E4R A;  2EH5 A;  2PCG A;  2PCI A;  2EHC A;  2P6K A;  3T0F A;  2Z6R A;  2DXV A;  3NDC A;  3NEI A;  3UTD A;  2E17 A;  4H4E A;  2PB6 A;  2EJZ A;  3KE8 A;  3KE9 A;  1VHV A;  2E16 A;  2DSG A;  2EL1 A;  2NPN A;  3ZGL A;  2EGL A;  3UWM A;  2EH2 A;  3ZGN A;  1WDE A;  2EK2 A;  2DSI A;  2EK3 A;  2E8R A;  3KEM A;  1V9A A;  3FFY A;  2EL0 A;  2P2X A;  3KEL A;  2ED5 A;  4H4D A;  2OWG A;  1VCE A;  2DSH A;  2EH4 A;  2HUQ A;  2BB3 A;  3SZL A;  2EJK A;  2EMR A;  3URK A;  4MV5 A;  1WYZ A;  2DV4 A;  2PCM A;  2OWU A;  2YBO A;  2P9D A;  2E15 A;  2DXX A;  2OWV A;  4MUX A;  2ELE A;  2DV7 A;  2EN5 A;  2EK4 A;  2HUX A;  2E4N A;  1PJQ A;  2DV5 A;  2E07 A;  1VA0 A;  3ND1 A;  3UV7 A;  2E7R A;  3F7T A;  2EEQ A;  2DV3 A;  2ED3 A;  1PJT A;  2EJJ A;  2PB4 A;  3HH1 A;  1WNG A;  4MUY A;  3UTC A;  3FQ6 A;  2PB5 A;  2EHL A;  3TIX B;  2E8S A;  2E8H A;  2EGB A;  2EKA A;  2HUV A;  2QBU A;  2P6L A;  1CBF A;  3NUT A;  2E8Q A;  3I4T A;  2E08 A;  2EGS A;  3UV6 A;  2EMU A;  2E0N A;  2OWK A;  4MV0 A;  2EK7 A;  4N7B A;  2P6D A;  4H4C A;  2PCH A;  2PCA A;  2ZVC A;  2EL3 A;  3LMM A;  2CBF A;  2HR8 A;  2ENI A;  3T0G A;  5HW4 A;  1S4D A;  2P6I A;  2E0K A;  3SZU A;  4EB3 A;  3DNF A;  2KYY A;  2EL2 A;  2ZVB A;  1PJS A;  3SZO A;  3KWP A;  2PCK A;  2DEK A;  2YBQ A;  1VE2 A;  2P5C A;  2HUT A;  2DXW A;  3KEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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