2EEQA

Mutant y29m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eeqA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eeqA01
2DV4A 2E16A 2PCIA 5HW4A 2DSHA 3FQ6A 2OWGA 2EK3A 2PCMA 2PCKA 2P6LA 2ED3A 2OWVA 2PCGA 2EHLA 2EKAA 2EGLA 2PB4A 2EJJA 2E17A 2EMUA 2ELDA 2HUXA 2EK2A 2P6DA 2EHCA 2PB6A 2DV3A 1CBFA 2EL1A 2HUQA 2E0KA 3HH1A 3NDCA 2E08A 2HUVA 1VE2A 2P9DA 2DXVA 2YBQA 2EK7A 1WNGA 2DXWA 2P6KA 2EH4A 1S4DA 2E8HA 2DEKA 1VA0A 2OWUA 2P2XA 2DV7A 2E4RA 2DXXA 1VHVA 2EGSA 2HR8A 3I4TA 2P5FA 2PB5A 3ND1A 2CBFA 2OWFA 2E8RA 2EEQA 2ED5A 2E8SA 1PJTA 1V9AA 2ENIA 2E4NA 2EH2A 2ELEA 2PCAA 3FFYA 2DSGA 2EJKA 3NEIA 2EJZA 2E15A 2ZVCA 2BB3A 2E8QA 2EL2A 2EN5A 2Z6RA 3NUTA 2ZVBA 2PCHA 2E7RA 2EL3A 2DV5A 2EMRA 1PJSA 2EL0A 1PJQA 2P6IA 2QBUA 2EH5A 2DSIA 2EGBA 2E0NA 2NPNA 2OWKA 3KWPA 4E16A 1WDEA 2YBOA 2EK4A 1WYZA 2E07A 2HUTA 2P5CA 1VCEA
chains in the Genus database with same CATH superfamily
2DV4A 2E16A 2PCIA 5HW4A 2DSHA 3FQ6A 4MV5A 2OWGA 2EK3A 3F7TA 2PCMA 2PCKA 3T0FA 2P6LA 2ED3A 2OWVA 3LMMA 2PCGA 2EHLA 2EKAA 2EGLA 2PB4A 2EJJA 2E17A 2EMUA 2ELDA 2HUXA 2EK2A 2P6DA 3UV3A 2EHCA 2PB6A 3SZOA 2DV3A 1CBFA 2EL1A 2HUQA 2E0KA 3HH1A 3NDCA 2E08A 2HUVA 1VE2A 2P9DA 2DXVA 2YBQA 2EK7A 1WNGA 2DXWA 2P6KA 2EH4A 1S4DA 2E8HA 4N7BA 3SZUA 4EB3A 2DEKA 1VA0A 2OWUA 2P2XA 2DV7A 3ZGNA 3ZGLA 2E4RA 2DXXA 1VHVA 2EGSA 2HR8A 3I4TA 2P5FA 2PB5A 3ND1A 2CBFA 4H4CA 3UV6A 2OWFA 3KELA 3T0GA 2E8RA 3KE9A 2EEQA 2ED5A 2E8SA 1PJTA 1V9AA 2ENIA 2E4NA 2EH2A 3UTCA 2ELEA 2PCAA 3FFYA 2DSGA 2EJKA 3NEIA 2EJZA 3KEFA 2E15A 3SZLA 2ZVCA 3UTDA 2BB3A 2E8QA 4H4DA 2EL2A 2EN5A 2Z6RA 3NUTA 3UWMA 2ZVBA 2PCHA 2E7RA 2EL3A 2DV5A 2EMRA 1PJSA 4MUYA 3TIXB 3KE8A 2EL0A 1PJQA 4MUXA 4MV0A 2P6IA 2QBUA 2EH5A 2DSIA 3DNFA 2EGBA 2E0NA 2NPNA 3KEMA 2OWKA 3KWPA 4E16A 1WDEA 2KYYA 2YBOA 2EK4A 1WYZA 4H4EA 3URKA 2E07A 2HUTA 2P5CA 1VCEA 3UV7A
chains in the Genus database with same CATH topology
2DV4A 2E16A 2PCIA 5HW4A 2DSHA 3FQ6A 4MV5A 2OWGA 2EK3A 3F7TA 2PCMA 2PCKA 3T0FA 2P6LA 2ED3A 2OWVA 3LMMA 2PCGA 2EHLA 2EKAA 2EGLA 2PB4A 2EJJA 2E17A 2EMUA 2ELDA 2HUXA 2EK2A 2P6DA 3UV3A 2EHCA 2PB6A 3SZOA 2DV3A 1CBFA 2EL1A 2HUQA 2E0KA 3HH1A 3NDCA 2E08A 2HUVA 1VE2A 2P9DA 2DXVA 2YBQA 2EK7A 1WNGA 2DXWA 2P6KA 2EH4A 1S4DA 2E8HA 4N7BA 3SZUA 4EB3A 2DEKA 1VA0A 2OWUA 2P2XA 2DV7A 3ZGNA 3ZGLA 2E4RA 2DXXA 1VHVA 2EGSA 2HR8A 3I4TA 2P5FA 2PB5A 3ND1A 2CBFA 4H4CA 3UV6A 2OWFA 3KELA 3T0GA 2E8RA 3KE9A 2EEQA 2ED5A 2E8SA 1PJTA 1V9AA 2ENIA 2E4NA 2EH2A 3UTCA 2ELEA 2PCAA 3FFYA 2DSGA 2EJKA 3NEIA 2EJZA 3KEFA 2E15A 3SZLA 2ZVCA 3UTDA 2BB3A 2E8QA 4H4DA 2EL2A 2EN5A 2Z6RA 3NUTA 3UWMA 2ZVBA 2PCHA 2E7RA 2EL3A 2DV5A 2EMRA 1PJSA 4MUYA 3TIXB 3KE8A 2EL0A 1PJQA 4MUXA 4MV0A 2P6IA 2QBUA 2EH5A 2DSIA 3DNFA 2EGBA 2E0NA 2NPNA 3KEMA 2OWKA 3KWPA 4E16A 1WDEA 2KYYA 2YBOA 2EK4A 1WYZA 4H4EA 3URKA 2E07A 2HUTA 2P5CA 1VCEA 3UV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV4 A;  2E16 A;  2PCI A;  5HW4 A;  2DSH A;  3FQ6 A;  2OWG A;  2EK3 A;  2PCM A;  2PCK A;  2P6L A;  2ED3 A;  2OWV A;  2PCG A;  2EHL A;  2EKA A;  2EGL A;  2PB4 A;  2EJJ A;  2E17 A;  2EMU A;  2ELD A;  2HUX A;  2EK2 A;  2P6D A;  2EHC A;  2PB6 A;  2DV3 A;  1CBF A;  2EL1 A;  2HUQ A;  2E0K A;  3HH1 A;  3NDC A;  2E08 A;  2HUV A;  1VE2 A;  2P9D A;  2DXV A;  2YBQ A;  2EK7 A;  1WNG A;  2DXW A;  2P6K A;  2EH4 A;  1S4D A;  2E8H A;  2DEK A;  1VA0 A;  2OWU A;  2P2X A;  2DV7 A;  2E4R A;  2DXX A;  1VHV A;  2EGS A;  2HR8 A;  3I4T A;  2P5F A;  2PB5 A;  3ND1 A;  2CBF A;  2OWF A;  2E8R A;  2EEQ A;  2ED5 A;  2E8S A;  1PJT A;  1V9A A;  2ENI A;  2E4N A;  2EH2 A;  2ELE A;  2PCA A;  3FFY A;  2DSG A;  2EJK A;  3NEI A;  2EJZ A;  2E15 A;  2ZVC A;  2BB3 A;  2E8Q A;  2EL2 A;  2EN5 A;  2Z6R A;  3NUT A;  2ZVB A;  2PCH A;  2E7R A;  2EL3 A;  2DV5 A;  2EMR A;  1PJS A;  2EL0 A;  1PJQ A;  2P6I A;  2QBU A;  2EH5 A;  2DSI A;  2EGB A;  2E0N A;  2NPN A;  2OWK A;  3KWP A;  4E16 A;  1WDE A;  2YBO A;  2EK4 A;  1WYZ A;  2E07 A;  2HUT A;  2P5C A;  1VCE A; 
#chains in the Genus database with same CATH topology
 2DV4 A;  2E16 A;  2PCI A;  5HW4 A;  2DSH A;  3FQ6 A;  4MV5 A;  2OWG A;  2EK3 A;  3F7T A;  2PCM A;  2PCK A;  3T0F A;  2P6L A;  2ED3 A;  2OWV A;  3LMM A;  2PCG A;  2EHL A;  2EKA A;  2EGL A;  2PB4 A;  2EJJ A;  2E17 A;  2EMU A;  2ELD A;  2HUX A;  2EK2 A;  2P6D A;  3UV3 A;  2EHC A;  2PB6 A;  3SZO A;  2DV3 A;  1CBF A;  2EL1 A;  2HUQ A;  2E0K A;  3HH1 A;  3NDC A;  2E08 A;  2HUV A;  1VE2 A;  2P9D A;  2DXV A;  2YBQ A;  2EK7 A;  1WNG A;  2DXW A;  2P6K A;  2EH4 A;  1S4D A;  2E8H A;  4N7B A;  3SZU A;  4EB3 A;  2DEK A;  1VA0 A;  2OWU A;  2P2X A;  2DV7 A;  3ZGN A;  3ZGL A;  2E4R A;  2DXX A;  1VHV A;  2EGS A;  2HR8 A;  3I4T A;  2P5F A;  2PB5 A;  3ND1 A;  2CBF A;  4H4C A;  3UV6 A;  2OWF A;  3KEL A;  3T0G A;  2E8R A;  3KE9 A;  2EEQ A;  2ED5 A;  2E8S A;  1PJT A;  1V9A A;  2ENI A;  2E4N A;  2EH2 A;  3UTC A;  2ELE A;  2PCA A;  3FFY A;  2DSG A;  2EJK A;  3NEI A;  2EJZ A;  3KEF A;  2E15 A;  3SZL A;  2ZVC A;  3UTD A;  2BB3 A;  2E8Q A;  4H4D A;  2EL2 A;  2EN5 A;  2Z6R A;  3NUT A;  3UWM A;  2ZVB A;  2PCH A;  2E7R A;  2EL3 A;  2DV5 A;  2EMR A;  1PJS A;  4MUY A;  3TIX B;  3KE8 A;  2EL0 A;  1PJQ A;  4MUX A;  4MV0 A;  2P6I A;  2QBU A;  2EH5 A;  2DSI A;  3DNF A;  2EGB A;  2E0N A;  2NPN A;  3KEM A;  2OWK A;  3KWP A;  4E16 A;  1WDE A;  2KYY A;  2YBO A;  2EK4 A;  1WYZ A;  4H4E A;  3URK A;  2E07 A;  2HUT A;  2P5C A;  1VCE A;  3UV7 A; 
#chains in the Genus database with same CATH homology
 2DV4 A;  2E16 A;  2PCI A;  5HW4 A;  2DSH A;  3FQ6 A;  4MV5 A;  2OWG A;  2EK3 A;  3F7T A;  2PCM A;  2PCK A;  3T0F A;  2P6L A;  2ED3 A;  2OWV A;  3LMM A;  2PCG A;  2EHL A;  2EKA A;  2EGL A;  2PB4 A;  2EJJ A;  2E17 A;  2EMU A;  2ELD A;  2HUX A;  2EK2 A;  2P6D A;  3UV3 A;  2EHC A;  2PB6 A;  3SZO A;  2DV3 A;  1CBF A;  2EL1 A;  2HUQ A;  2E0K A;  3HH1 A;  3NDC A;  2E08 A;  2HUV A;  1VE2 A;  2P9D A;  2DXV A;  2YBQ A;  2EK7 A;  1WNG A;  2DXW A;  2P6K A;  2EH4 A;  1S4D A;  2E8H A;  4N7B A;  3SZU A;  4EB3 A;  2DEK A;  1VA0 A;  2OWU A;  2P2X A;  2DV7 A;  3ZGN A;  3ZGL A;  2E4R A;  2DXX A;  1VHV A;  2EGS A;  2HR8 A;  3I4T A;  2P5F A;  2PB5 A;  3ND1 A;  2CBF A;  4H4C A;  3UV6 A;  2OWF A;  3KEL A;  3T0G A;  2E8R A;  3KE9 A;  2EEQ A;  2ED5 A;  2E8S A;  1PJT A;  1V9A A;  2ENI A;  2E4N A;  2EH2 A;  3UTC A;  2ELE A;  2PCA A;  3FFY A;  2DSG A;  2EJK A;  3NEI A;  2EJZ A;  3KEF A;  2E15 A;  3SZL A;  2ZVC A;  3UTD A;  2BB3 A;  2E8Q A;  4H4D A;  2EL2 A;  2EN5 A;  2Z6R A;  3NUT A;  3UWM A;  2ZVB A;  2PCH A;  2E7R A;  2EL3 A;  2DV5 A;  2EMR A;  1PJS A;  4MUY A;  3TIX B;  3KE8 A;  2EL0 A;  1PJQ A;  4MUX A;  4MV0 A;  2P6I A;  2QBU A;  2EH5 A;  2DSI A;  3DNF A;  2EGB A;  2E0N A;  2NPN A;  3KEM A;  2OWK A;  3KWP A;  4E16 A;  1WDE A;  2KYY A;  2YBO A;  2EK4 A;  1WYZ A;  4H4E A;  3URK A;  2E07 A;  2HUT A;  2P5C A;  1VCE A;  3UV7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...