2EH5A

Mutant l184m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMEMLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant L184M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh5A01
2NPNA 1PJSA 2PCHA 2HR8A 2EN5A 2Z6RA 2DV5A 2PB6A 1V9AA 2E0NA 2EGSA 3I4TA 2BB3A 1S4DA 2HUVA 2EK4A 2DV3A 2HUQA 2PCKA 2EL1A 2E17A 3ND1A 2P2XA 1WNGA 3FFYA 3KWPA 2EK7A 2EJKA 5HW4A 2QBUA 2YBQA 1CBFA 2YBOA 2E7RA 2EEQA 2HUTA 2EL2A 2P5FA 4E16A 2E15A 2EMUA 2DEKA 2E8QA 2ELEA 2EH4A 2EMRA 2DXVA 2DV4A 2CBFA 2OWFA 1PJQA 2ELDA 2E08A 2ENIA 1VCEA 3HH1A 1VHVA 2EHLA 2E0KA 2ZVCA 3NDCA 2E8RA 2ZVBA 2OWGA 2EJZA 2DXWA 2E4NA 1VA0A 2OWVA 2E8HA 2EKAA 2EL3A 2EL0A 2EHCA 2PB4A 3FQ6A 2P6DA 2P6LA 2E07A 1VE2A 2EK3A 2DSIA 2P6IA 2EGBA 2OWKA 2P6KA 2E4RA 2EGLA 3NUTA 2PCMA 2PCIA 2DSHA 2P5CA 2ED5A 2EH2A 3NEIA 2EK2A 2PCGA 2DXXA 1WYZA 2E8SA 2HUXA 2DSGA 2PCAA 2E16A 1PJTA 2PB5A 2OWUA 2DV7A 2EH5A 1WDEA 2ED3A 2EJJA 2P9DA
chains in the Genus database with same CATH superfamily
2NPNA 1PJSA 3UV7A 4N7BA 2PCHA 3UTCA 2HR8A 2EN5A 2Z6RA 2DV5A 3F7TA 2PB6A 1V9AA 3SZOA 2E0NA 2EGSA 3I4TA 2BB3A 1S4DA 2HUVA 4H4DA 2EK4A 2DV3A 4MUYA 2HUQA 2PCKA 2EL1A 2E17A 3ND1A 2P2XA 1WNGA 3FFYA 3KWPA 3UWMA 2EK7A 2EJKA 5HW4A 2QBUA 3KE8A 2YBQA 3UTDA 1CBFA 2YBOA 2E7RA 2EEQA 2HUTA 3UV6A 2EL2A 2P5FA 4E16A 2E15A 2EMUA 2DEKA 2E8QA 2ELEA 2EH4A 2EMRA 2DXVA 2DV4A 2CBFA 2OWFA 1PJQA 2ELDA 2E08A 2ENIA 1VCEA 3HH1A 1VHVA 2EHLA 2E0KA 2ZVCA 3T0FA 4EB3A 3NDCA 3LMMA 2E8RA 2ZVBA 3SZLA 4MV0A 2OWGA 2EJZA 3KE9A 2DXWA 2E4NA 1VA0A 2OWVA 2E8HA 2EKAA 2EL3A 2EL0A 2EHCA 2PB4A 3FQ6A 3KELA 3UV3A 2P6DA 3T0GA 2P6LA 2E07A 1VE2A 2EK3A 2DSIA 2KYYA 2P6IA 2EGBA 2OWKA 3TIXB 4H4EA 2P6KA 2E4RA 2EGLA 4H4CA 3NUTA 2PCMA 2PCIA 3URKA 2DSHA 2P5CA 2ED5A 2EH2A 3NEIA 2EK2A 3KEFA 2PCGA 2DXXA 4MUXA 1WYZA 2E8SA 3ZGLA 2HUXA 3KEMA 2DSGA 2PCAA 2E16A 1PJTA 2PB5A 2OWUA 3DNFA 4MV5A 2DV7A 3SZUA 3ZGNA 2EH5A 1WDEA 2ED3A 2EJJA 2P9DA
chains in the Genus database with same CATH topology
2NPNA 1PJSA 3UV7A 4N7BA 2PCHA 3UTCA 2HR8A 2EN5A 2Z6RA 2DV5A 3F7TA 2PB6A 1V9AA 3SZOA 2E0NA 2EGSA 3I4TA 2BB3A 1S4DA 2HUVA 4H4DA 2EK4A 2DV3A 4MUYA 2HUQA 2PCKA 2EL1A 2E17A 3ND1A 2P2XA 1WNGA 3FFYA 3KWPA 3UWMA 2EK7A 2EJKA 5HW4A 2QBUA 3KE8A 2YBQA 3UTDA 1CBFA 2YBOA 2E7RA 2EEQA 2HUTA 3UV6A 2EL2A 2P5FA 4E16A 2E15A 2EMUA 2DEKA 2E8QA 2ELEA 2EH4A 2EMRA 2DXVA 2DV4A 2CBFA 2OWFA 1PJQA 2ELDA 2E08A 2ENIA 1VCEA 3HH1A 1VHVA 2EHLA 2E0KA 2ZVCA 3T0FA 4EB3A 3NDCA 3LMMA 2E8RA 2ZVBA 3SZLA 4MV0A 2OWGA 2EJZA 3KE9A 2DXWA 2E4NA 1VA0A 2OWVA 2E8HA 2EKAA 2EL3A 2EL0A 2EHCA 2PB4A 3FQ6A 3KELA 3UV3A 2P6DA 3T0GA 2P6LA 2E07A 1VE2A 2EK3A 2DSIA 2KYYA 2P6IA 2EGBA 2OWKA 3TIXB 4H4EA 2P6KA 2E4RA 2EGLA 4H4CA 3NUTA 2PCMA 2PCIA 3URKA 2DSHA 2P5CA 2ED5A 2EH2A 3NEIA 2EK2A 3KEFA 2PCGA 2DXXA 4MUXA 1WYZA 2E8SA 3ZGLA 2HUXA 3KEMA 2DSGA 2PCAA 2E16A 1PJTA 2PB5A 2OWUA 3DNFA 4MV5A 2DV7A 3SZUA 3ZGNA 2EH5A 1WDEA 2ED3A 2EJJA 2P9DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NPN A;  1PJS A;  2PCH A;  2HR8 A;  2EN5 A;  2Z6R A;  2DV5 A;  2PB6 A;  1V9A A;  2E0N A;  2EGS A;  3I4T A;  2BB3 A;  1S4D A;  2HUV A;  2EK4 A;  2DV3 A;  2HUQ A;  2PCK A;  2EL1 A;  2E17 A;  3ND1 A;  2P2X A;  1WNG A;  3FFY A;  3KWP A;  2EK7 A;  2EJK A;  5HW4 A;  2QBU A;  2YBQ A;  1CBF A;  2YBO A;  2E7R A;  2EEQ A;  2HUT A;  2EL2 A;  2P5F A;  4E16 A;  2E15 A;  2EMU A;  2DEK A;  2E8Q A;  2ELE A;  2EH4 A;  2EMR A;  2DXV A;  2DV4 A;  2CBF A;  2OWF A;  1PJQ A;  2ELD A;  2E08 A;  2ENI A;  1VCE A;  3HH1 A;  1VHV A;  2EHL A;  2E0K A;  2ZVC A;  3NDC A;  2E8R A;  2ZVB A;  2OWG A;  2EJZ A;  2DXW A;  2E4N A;  1VA0 A;  2OWV A;  2E8H A;  2EKA A;  2EL3 A;  2EL0 A;  2EHC A;  2PB4 A;  3FQ6 A;  2P6D A;  2P6L A;  2E07 A;  1VE2 A;  2EK3 A;  2DSI A;  2P6I A;  2EGB A;  2OWK A;  2P6K A;  2E4R A;  2EGL A;  3NUT A;  2PCM A;  2PCI A;  2DSH A;  2P5C A;  2ED5 A;  2EH2 A;  3NEI A;  2EK2 A;  2PCG A;  2DXX A;  1WYZ A;  2E8S A;  2HUX A;  2DSG A;  2PCA A;  2E16 A;  1PJT A;  2PB5 A;  2OWU A;  2DV7 A;  2EH5 A;  1WDE A;  2ED3 A;  2EJJ A;  2P9D A; 
#chains in the Genus database with same CATH topology
 2NPN A;  1PJS A;  3UV7 A;  4N7B A;  2PCH A;  3UTC A;  2HR8 A;  2EN5 A;  2Z6R A;  2DV5 A;  3F7T A;  2PB6 A;  1V9A A;  3SZO A;  2E0N A;  2EGS A;  3I4T A;  2BB3 A;  1S4D A;  2HUV A;  4H4D A;  2EK4 A;  2DV3 A;  4MUY A;  2HUQ A;  2PCK A;  2EL1 A;  2E17 A;  3ND1 A;  2P2X A;  1WNG A;  3FFY A;  3KWP A;  3UWM A;  2EK7 A;  2EJK A;  5HW4 A;  2QBU A;  3KE8 A;  2YBQ A;  3UTD A;  1CBF A;  2YBO A;  2E7R A;  2EEQ A;  2HUT A;  3UV6 A;  2EL2 A;  2P5F A;  4E16 A;  2E15 A;  2EMU A;  2DEK A;  2E8Q A;  2ELE A;  2EH4 A;  2EMR A;  2DXV A;  2DV4 A;  2CBF A;  2OWF A;  1PJQ A;  2ELD A;  2E08 A;  2ENI A;  1VCE A;  3HH1 A;  1VHV A;  2EHL A;  2E0K A;  2ZVC A;  3T0F A;  4EB3 A;  3NDC A;  3LMM A;  2E8R A;  2ZVB A;  3SZL A;  4MV0 A;  2OWG A;  2EJZ A;  3KE9 A;  2DXW A;  2E4N A;  1VA0 A;  2OWV A;  2E8H A;  2EKA A;  2EL3 A;  2EL0 A;  2EHC A;  2PB4 A;  3FQ6 A;  3KEL A;  3UV3 A;  2P6D A;  3T0G A;  2P6L A;  2E07 A;  1VE2 A;  2EK3 A;  2DSI A;  2KYY A;  2P6I A;  2EGB A;  2OWK A;  3TIX B;  4H4E A;  2P6K A;  2E4R A;  2EGL A;  4H4C A;  3NUT A;  2PCM A;  2PCI A;  3URK A;  2DSH A;  2P5C A;  2ED5 A;  2EH2 A;  3NEI A;  2EK2 A;  3KEF A;  2PCG A;  2DXX A;  4MUX A;  1WYZ A;  2E8S A;  3ZGL A;  2HUX A;  3KEM A;  2DSG A;  2PCA A;  2E16 A;  1PJT A;  2PB5 A;  2OWU A;  3DNF A;  4MV5 A;  2DV7 A;  3SZU A;  3ZGN A;  2EH5 A;  1WDE A;  2ED3 A;  2EJJ A;  2P9D A; 
#chains in the Genus database with same CATH homology
 2NPN A;  1PJS A;  3UV7 A;  4N7B A;  2PCH A;  3UTC A;  2HR8 A;  2EN5 A;  2Z6R A;  2DV5 A;  3F7T A;  2PB6 A;  1V9A A;  3SZO A;  2E0N A;  2EGS A;  3I4T A;  2BB3 A;  1S4D A;  2HUV A;  4H4D A;  2EK4 A;  2DV3 A;  4MUY A;  2HUQ A;  2PCK A;  2EL1 A;  2E17 A;  3ND1 A;  2P2X A;  1WNG A;  3FFY A;  3KWP A;  3UWM A;  2EK7 A;  2EJK A;  5HW4 A;  2QBU A;  3KE8 A;  2YBQ A;  3UTD A;  1CBF A;  2YBO A;  2E7R A;  2EEQ A;  2HUT A;  3UV6 A;  2EL2 A;  2P5F A;  4E16 A;  2E15 A;  2EMU A;  2DEK A;  2E8Q A;  2ELE A;  2EH4 A;  2EMR A;  2DXV A;  2DV4 A;  2CBF A;  2OWF A;  1PJQ A;  2ELD A;  2E08 A;  2ENI A;  1VCE A;  3HH1 A;  1VHV A;  2EHL A;  2E0K A;  2ZVC A;  3T0F A;  4EB3 A;  3NDC A;  3LMM A;  2E8R A;  2ZVB A;  3SZL A;  4MV0 A;  2OWG A;  2EJZ A;  3KE9 A;  2DXW A;  2E4N A;  1VA0 A;  2OWV A;  2E8H A;  2EKA A;  2EL3 A;  2EL0 A;  2EHC A;  2PB4 A;  3FQ6 A;  3KEL A;  3UV3 A;  2P6D A;  3T0G A;  2P6L A;  2E07 A;  1VE2 A;  2EK3 A;  2DSI A;  2KYY A;  2P6I A;  2EGB A;  2OWK A;  3TIX B;  4H4E A;  2P6K A;  2E4R A;  2EGL A;  4H4C A;  3NUT A;  2PCM A;  2PCI A;  3URK A;  2DSH A;  2P5C A;  2ED5 A;  2EH2 A;  3NEI A;  2EK2 A;  3KEF A;  2PCG A;  2DXX A;  4MUX A;  1WYZ A;  2E8S A;  3ZGL A;  2HUX A;  3KEM A;  2DSG A;  2PCA A;  2E16 A;  1PJT A;  2PB5 A;  2OWU A;  3DNF A;  4MV5 A;  2DV7 A;  3SZU A;  3ZGN A;  2EH5 A;  1WDE A;  2ED3 A;  2EJJ A;  2P9D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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