2EH5A

Mutant l184m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMEMLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords diphthine synthase
publication title Mutant L184M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh5A01
1VE2A 2DSHA 1VHVA 2E8QA 2P6KA 3HH1A 2P2XA 2EL0A 2DV7A 2EL1A 2E16A 2ED5A 2EH5A 2EEQA 2DV3A 3ND1A 2EH2A 2DEKA 2E4NA 4E16A 2PCMA 2E17A 2HR8A 2ELEA 2P6DA 1PJSA 2HUVA 2EHLA 2P5FA 2P6LA 3I4TA 2ED3A 1WNGA 2DV4A 2EJZA 2OWVA 2EMRA 2EJJA 2PCHA 2NPNA 2EN5A 2OWGA 2DV5A 2Z6RA 1V9AA 2YBOA 2EK7A 2EGBA 1S4DA 2E08A 2E4RA 2PCAA 2PB6A 2E7RA 2E8SA 2PCKA 2DXVA 2ENIA 2E07A 2E15A 2DXXA 2HUQA 2E8HA 2EGLA 2PCGA 2E0KA 1WYZA 2EJKA 3NUTA 2EGSA 5HW4A 2P6IA 2EL2A 2E8RA 2DSGA 2ELDA 2DXWA 2PB4A 3NDCA 1CBFA 1PJQA 2EKAA 1VCEA 1WDEA 2OWFA 2BB3A 3KWPA 3NEIA 2OWKA 2ZVCA 2DSIA 2HUTA 1VA0A 2EHCA 2EK2A 3FQ6A 2QBUA 2EK4A 2EH4A 2EMUA 3FFYA 1PJTA 2OWUA 2HUXA 2CBFA 2ZVBA 2E0NA 2PB5A 2PCIA 2P9DA 2YBQA 2P5CA 2EL3A 2EK3A
chains in the Genus database with same CATH superfamily
1VE2A 2DSHA 1VHVA 2E8QA 2P6KA 3HH1A 2P2XA 2EL0A 2DV7A 2EL1A 2E16A 2ED5A 2EH5A 2EEQA 2DV3A 3ND1A 2EH2A 2DEKA 2E4NA 4E16A 3SZUA 3LMMA 2PCMA 2E17A 2HR8A 2ELEA 2P6DA 1PJSA 2HUVA 3UV3A 3SZOA 2EHLA 2P5FA 2P6LA 3I4TA 2ED3A 1WNGA 2DV4A 2EJZA 2OWVA 2EMRA 3KEMA 2EJJA 3ZGLA 2PCHA 2KYYA 2NPNA 3F7TA 4MUXA 3UTCA 2EN5A 2OWGA 2DV5A 2Z6RA 1V9AA 2YBOA 2EK7A 3UV6A 4MV0A 2EGBA 3TIXB 1S4DA 3ZGNA 3T0GA 2E08A 2E4RA 2PCAA 2PB6A 2E7RA 2E8SA 3KE9A 2PCKA 2DXVA 2ENIA 2E07A 4EB3A 4H4DA 2E15A 2DXXA 2HUQA 4MV5A 2E8HA 2EGLA 3DNFA 2PCGA 4H4CA 2E0KA 1WYZA 2EJKA 3T0FA 3NUTA 2EGSA 5HW4A 2P6IA 2EL2A 2E8RA 2DSGA 2ELDA 2DXWA 3UWMA 2PB4A 3NDCA 1CBFA 4N7BA 1PJQA 2EKAA 1VCEA 1WDEA 2OWFA 4H4EA 2BB3A 3KWPA 3NEIA 3UV7A 3KELA 2OWKA 2ZVCA 2DSIA 2HUTA 1VA0A 2EHCA 2EK2A 3FQ6A 2QBUA 3KE8A 2EK4A 2EH4A 2EMUA 3FFYA 1PJTA 2OWUA 3UTDA 2HUXA 2CBFA 2ZVBA 2E0NA 2PB5A 3SZLA 3KEFA 2PCIA 2P9DA 2YBQA 4MUYA 2P5CA 3URKA 2EL3A 2EK3A
chains in the Genus database with same CATH topology
1VE2A 2DSHA 1VHVA 2E8QA 2P6KA 3HH1A 2P2XA 2EL0A 2DV7A 2EL1A 2E16A 2ED5A 2EH5A 2EEQA 2DV3A 3ND1A 2EH2A 2DEKA 2E4NA 4E16A 3SZUA 3LMMA 2PCMA 2E17A 2HR8A 2ELEA 2P6DA 1PJSA 2HUVA 3UV3A 3SZOA 2EHLA 2P5FA 2P6LA 3I4TA 2ED3A 1WNGA 2DV4A 2EJZA 2OWVA 2EMRA 3KEMA 2EJJA 3ZGLA 2PCHA 2KYYA 2NPNA 3F7TA 4MUXA 3UTCA 2EN5A 2OWGA 2DV5A 2Z6RA 1V9AA 2YBOA 2EK7A 3UV6A 4MV0A 2EGBA 3TIXB 1S4DA 3ZGNA 3T0GA 2E08A 2E4RA 2PCAA 2PB6A 2E7RA 2E8SA 3KE9A 2PCKA 2DXVA 2ENIA 2E07A 4EB3A 4H4DA 2E15A 2DXXA 2HUQA 4MV5A 2E8HA 2EGLA 3DNFA 2PCGA 4H4CA 2E0KA 1WYZA 2EJKA 3T0FA 3NUTA 2EGSA 5HW4A 2P6IA 2EL2A 2E8RA 2DSGA 2ELDA 2DXWA 3UWMA 2PB4A 3NDCA 1CBFA 4N7BA 1PJQA 2EKAA 1VCEA 1WDEA 2OWFA 4H4EA 2BB3A 3KWPA 3NEIA 3UV7A 3KELA 2OWKA 2ZVCA 2DSIA 2HUTA 1VA0A 2EHCA 2EK2A 3FQ6A 2QBUA 3KE8A 2EK4A 2EH4A 2EMUA 3FFYA 1PJTA 2OWUA 3UTDA 2HUXA 2CBFA 2ZVBA 2E0NA 2PB5A 3SZLA 3KEFA 2PCIA 2P9DA 2YBQA 4MUYA 2P5CA 3URKA 2EL3A 2EK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VE2 A;  2DSH A;  1VHV A;  2E8Q A;  2P6K A;  3HH1 A;  2P2X A;  2EL0 A;  2DV7 A;  2EL1 A;  2E16 A;  2ED5 A;  2EH5 A;  2EEQ A;  2DV3 A;  3ND1 A;  2EH2 A;  2DEK A;  2E4N A;  4E16 A;  2PCM A;  2E17 A;  2HR8 A;  2ELE A;  2P6D A;  1PJS A;  2HUV A;  2EHL A;  2P5F A;  2P6L A;  3I4T A;  2ED3 A;  1WNG A;  2DV4 A;  2EJZ A;  2OWV A;  2EMR A;  2EJJ A;  2PCH A;  2NPN A;  2EN5 A;  2OWG A;  2DV5 A;  2Z6R A;  1V9A A;  2YBO A;  2EK7 A;  2EGB A;  1S4D A;  2E08 A;  2E4R A;  2PCA A;  2PB6 A;  2E7R A;  2E8S A;  2PCK A;  2DXV A;  2ENI A;  2E07 A;  2E15 A;  2DXX A;  2HUQ A;  2E8H A;  2EGL A;  2PCG A;  2E0K A;  1WYZ A;  2EJK A;  3NUT A;  2EGS A;  5HW4 A;  2P6I A;  2EL2 A;  2E8R A;  2DSG A;  2ELD A;  2DXW A;  2PB4 A;  3NDC A;  1CBF A;  1PJQ A;  2EKA A;  1VCE A;  1WDE A;  2OWF A;  2BB3 A;  3KWP A;  3NEI A;  2OWK A;  2ZVC A;  2DSI A;  2HUT A;  1VA0 A;  2EHC A;  2EK2 A;  3FQ6 A;  2QBU A;  2EK4 A;  2EH4 A;  2EMU A;  3FFY A;  1PJT A;  2OWU A;  2HUX A;  2CBF A;  2ZVB A;  2E0N A;  2PB5 A;  2PCI A;  2P9D A;  2YBQ A;  2P5C A;  2EL3 A;  2EK3 A; 
#chains in the Genus database with same CATH topology
 1VE2 A;  2DSH A;  1VHV A;  2E8Q A;  2P6K A;  3HH1 A;  2P2X A;  2EL0 A;  2DV7 A;  2EL1 A;  2E16 A;  2ED5 A;  2EH5 A;  2EEQ A;  2DV3 A;  3ND1 A;  2EH2 A;  2DEK A;  2E4N A;  4E16 A;  3SZU A;  3LMM A;  2PCM A;  2E17 A;  2HR8 A;  2ELE A;  2P6D A;  1PJS A;  2HUV A;  3UV3 A;  3SZO A;  2EHL A;  2P5F A;  2P6L A;  3I4T A;  2ED3 A;  1WNG A;  2DV4 A;  2EJZ A;  2OWV A;  2EMR A;  3KEM A;  2EJJ A;  3ZGL A;  2PCH A;  2KYY A;  2NPN A;  3F7T A;  4MUX A;  3UTC A;  2EN5 A;  2OWG A;  2DV5 A;  2Z6R A;  1V9A A;  2YBO A;  2EK7 A;  3UV6 A;  4MV0 A;  2EGB A;  3TIX B;  1S4D A;  3ZGN A;  3T0G A;  2E08 A;  2E4R A;  2PCA A;  2PB6 A;  2E7R A;  2E8S A;  3KE9 A;  2PCK A;  2DXV A;  2ENI A;  2E07 A;  4EB3 A;  4H4D A;  2E15 A;  2DXX A;  2HUQ A;  4MV5 A;  2E8H A;  2EGL A;  3DNF A;  2PCG A;  4H4C A;  2E0K A;  1WYZ A;  2EJK A;  3T0F A;  3NUT A;  2EGS A;  5HW4 A;  2P6I A;  2EL2 A;  2E8R A;  2DSG A;  2ELD A;  2DXW A;  3UWM A;  2PB4 A;  3NDC A;  1CBF A;  4N7B A;  1PJQ A;  2EKA A;  1VCE A;  1WDE A;  2OWF A;  4H4E A;  2BB3 A;  3KWP A;  3NEI A;  3UV7 A;  3KEL A;  2OWK A;  2ZVC A;  2DSI A;  2HUT A;  1VA0 A;  2EHC A;  2EK2 A;  3FQ6 A;  2QBU A;  3KE8 A;  2EK4 A;  2EH4 A;  2EMU A;  3FFY A;  1PJT A;  2OWU A;  3UTD A;  2HUX A;  2CBF A;  2ZVB A;  2E0N A;  2PB5 A;  3SZL A;  3KEF A;  2PCI A;  2P9D A;  2YBQ A;  4MUY A;  2P5C A;  3URK A;  2EL3 A;  2EK3 A; 
#chains in the Genus database with same CATH homology
 1VE2 A;  2DSH A;  1VHV A;  2E8Q A;  2P6K A;  3HH1 A;  2P2X A;  2EL0 A;  2DV7 A;  2EL1 A;  2E16 A;  2ED5 A;  2EH5 A;  2EEQ A;  2DV3 A;  3ND1 A;  2EH2 A;  2DEK A;  2E4N A;  4E16 A;  3SZU A;  3LMM A;  2PCM A;  2E17 A;  2HR8 A;  2ELE A;  2P6D A;  1PJS A;  2HUV A;  3UV3 A;  3SZO A;  2EHL A;  2P5F A;  2P6L A;  3I4T A;  2ED3 A;  1WNG A;  2DV4 A;  2EJZ A;  2OWV A;  2EMR A;  3KEM A;  2EJJ A;  3ZGL A;  2PCH A;  2KYY A;  2NPN A;  3F7T A;  4MUX A;  3UTC A;  2EN5 A;  2OWG A;  2DV5 A;  2Z6R A;  1V9A A;  2YBO A;  2EK7 A;  3UV6 A;  4MV0 A;  2EGB A;  3TIX B;  1S4D A;  3ZGN A;  3T0G A;  2E08 A;  2E4R A;  2PCA A;  2PB6 A;  2E7R A;  2E8S A;  3KE9 A;  2PCK A;  2DXV A;  2ENI A;  2E07 A;  4EB3 A;  4H4D A;  2E15 A;  2DXX A;  2HUQ A;  4MV5 A;  2E8H A;  2EGL A;  3DNF A;  2PCG A;  4H4C A;  2E0K A;  1WYZ A;  2EJK A;  3T0F A;  3NUT A;  2EGS A;  5HW4 A;  2P6I A;  2EL2 A;  2E8R A;  2DSG A;  2ELD A;  2DXW A;  3UWM A;  2PB4 A;  3NDC A;  1CBF A;  4N7B A;  1PJQ A;  2EKA A;  1VCE A;  1WDE A;  2OWF A;  4H4E A;  2BB3 A;  3KWP A;  3NEI A;  3UV7 A;  3KEL A;  2OWK A;  2ZVC A;  2DSI A;  2HUT A;  1VA0 A;  2EHC A;  2EK2 A;  3FQ6 A;  2QBU A;  3KE8 A;  2EK4 A;  2EH4 A;  2EMU A;  3FFY A;  1PJT A;  2OWU A;  3UTD A;  2HUX A;  2CBF A;  2ZVB A;  2E0N A;  2PB5 A;  3SZL A;  3KEF A;  2PCI A;  2P9D A;  2YBQ A;  4MUY A;  2P5C A;  3URK A;  2EL3 A;  2EK3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...