2EH5A

Mutant l184m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMEMLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant L184M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh5A01
1VCEA 2E7RA 2DSIA 2P6IA 2EHCA 2EJZA 3NEIA 2DSGA 2EH2A 2E07A 3FQ6A 2OWFA 2Z6RA 2EH5A 2DXWA 2EHLA 2DXVA 2P5FA 2E08A 2EMUA 2PCHA 2EK2A 2QBUA 2E0NA 4E16A 2EKAA 2EL1A 2EGBA 2DV3A 2ELDA 1WDEA 2YBOA 2EK4A 5HW4A 1VE2A 3FFYA 2P6DA 2ZVBA 2HUTA 2P5CA 3NUTA 2E4NA 2ELEA 2PCKA 2EGLA 2OWVA 2EK3A 1V9AA 2E8SA 2HUQA 2NPNA 3ND1A 2EL0A 2HR8A 1WYZA 2DV5A 1PJSA 2DV4A 2EK7A 2YBQA 2EN5A 1S4DA 2DV7A 2PCAA 2E15A 2PCGA 2E17A 2EGSA 2E0KA 3I4TA 3HH1A 2ENIA 2CBFA 2E4RA 2E16A 2OWUA 2PB6A 2OWKA 2PB5A 2EJJA 2E8HA 1PJQA 2EEQA 2DEKA 2EL2A 2EJKA 1VA0A 2PB4A 2E8QA 3NDCA 1CBFA 2EL3A 2EH4A 2HUVA 2P2XA 2ZVCA 2E8RA 2HUXA 2P6LA 1VHVA 2ED5A 2PCMA 2P9DA 1WNGA 2P6KA 2DSHA 2DXXA 2ED3A 2OWGA 3KWPA 1PJTA 2PCIA 2BB3A 2EMRA
chains in the Genus database with same CATH superfamily
1VCEA 4MUYA 2E7RA 2DSIA 2P6IA 2EHCA 3SZLA 2EJZA 3F7TA 3KEMA 3NEIA 2DSGA 2EH2A 2E07A 3FQ6A 2OWFA 2Z6RA 2EH5A 2DXWA 2EHLA 2DXVA 2P5FA 2E08A 2EMUA 2PCHA 2EK2A 2QBUA 2E0NA 4E16A 2EKAA 2EL1A 2EGBA 2DV3A 3DNFA 2ELDA 3ZGLA 3URKA 1WDEA 2YBOA 2EK4A 3ZGNA 5HW4A 1VE2A 3FFYA 2P6DA 2ZVBA 2HUTA 2P5CA 3NUTA 2E4NA 2ELEA 3SZUA 2PCKA 2EGLA 2OWVA 2EK3A 1V9AA 3KEFA 2E8SA 2HUQA 2NPNA 3T0GA 3ND1A 4H4DA 2EL0A 2HR8A 4MV0A 1WYZA 2DV5A 3UV3A 1PJSA 2DV4A 2EK7A 2YBQA 2EN5A 1S4DA 2DV7A 2PCAA 2E15A 2PCGA 3UTCA 2E17A 2EGSA 2E0KA 3I4TA 3HH1A 4MV5A 2ENIA 4H4CA 3T0FA 3TIXB 2CBFA 2E4RA 2E16A 2KYYA 2OWUA 2PB6A 2OWKA 3UTDA 2PB5A 2EJJA 2E8HA 1PJQA 2EEQA 2DEKA 2EL2A 3KE8A 2EJKA 1VA0A 2PB4A 2E8QA 4N7BA 3NDCA 1CBFA 2EL3A 3SZOA 2EH4A 2HUVA 4MUXA 2P2XA 2ZVCA 3UV7A 2E8RA 3KELA 3UWMA 2HUXA 2P6LA 3KE9A 3LMMA 1VHVA 2ED5A 2PCMA 2P9DA 1WNGA 2P6KA 2DSHA 2DXXA 4EB3A 4H4EA 2ED3A 2OWGA 3KWPA 3UV6A 1PJTA 2PCIA 2BB3A 2EMRA
chains in the Genus database with same CATH topology
1VCEA 4MUYA 2E7RA 2DSIA 2P6IA 2EHCA 3SZLA 2EJZA 3F7TA 3KEMA 3NEIA 2DSGA 2EH2A 2E07A 3FQ6A 2OWFA 2Z6RA 2EH5A 2DXWA 2EHLA 2DXVA 2P5FA 2E08A 2EMUA 2PCHA 2EK2A 2QBUA 2E0NA 4E16A 2EKAA 2EL1A 2EGBA 2DV3A 3DNFA 2ELDA 3ZGLA 3URKA 1WDEA 2YBOA 2EK4A 3ZGNA 5HW4A 1VE2A 3FFYA 2P6DA 2ZVBA 2HUTA 2P5CA 3NUTA 2E4NA 2ELEA 3SZUA 2PCKA 2EGLA 2OWVA 2EK3A 1V9AA 3KEFA 2E8SA 2HUQA 2NPNA 3T0GA 3ND1A 4H4DA 2EL0A 2HR8A 4MV0A 1WYZA 2DV5A 3UV3A 1PJSA 2DV4A 2EK7A 2YBQA 2EN5A 1S4DA 2DV7A 2PCAA 2E15A 2PCGA 3UTCA 2E17A 2EGSA 2E0KA 3I4TA 3HH1A 4MV5A 2ENIA 4H4CA 3T0FA 3TIXB 2CBFA 2E4RA 2E16A 2KYYA 2OWUA 2PB6A 2OWKA 3UTDA 2PB5A 2EJJA 2E8HA 1PJQA 2EEQA 2DEKA 2EL2A 3KE8A 2EJKA 1VA0A 2PB4A 2E8QA 4N7BA 3NDCA 1CBFA 2EL3A 3SZOA 2EH4A 2HUVA 4MUXA 2P2XA 2ZVCA 3UV7A 2E8RA 3KELA 3UWMA 2HUXA 2P6LA 3KE9A 3LMMA 1VHVA 2ED5A 2PCMA 2P9DA 1WNGA 2P6KA 2DSHA 2DXXA 4EB3A 4H4EA 2ED3A 2OWGA 3KWPA 3UV6A 1PJTA 2PCIA 2BB3A 2EMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VCE A;  2E7R A;  2DSI A;  2P6I A;  2EHC A;  2EJZ A;  3NEI A;  2DSG A;  2EH2 A;  2E07 A;  3FQ6 A;  2OWF A;  2Z6R A;  2EH5 A;  2DXW A;  2EHL A;  2DXV A;  2P5F A;  2E08 A;  2EMU A;  2PCH A;  2EK2 A;  2QBU A;  2E0N A;  4E16 A;  2EKA A;  2EL1 A;  2EGB A;  2DV3 A;  2ELD A;  1WDE A;  2YBO A;  2EK4 A;  5HW4 A;  1VE2 A;  3FFY A;  2P6D A;  2ZVB A;  2HUT A;  2P5C A;  3NUT A;  2E4N A;  2ELE A;  2PCK A;  2EGL A;  2OWV A;  2EK3 A;  1V9A A;  2E8S A;  2HUQ A;  2NPN A;  3ND1 A;  2EL0 A;  2HR8 A;  1WYZ A;  2DV5 A;  1PJS A;  2DV4 A;  2EK7 A;  2YBQ A;  2EN5 A;  1S4D A;  2DV7 A;  2PCA A;  2E15 A;  2PCG A;  2E17 A;  2EGS A;  2E0K A;  3I4T A;  3HH1 A;  2ENI A;  2CBF A;  2E4R A;  2E16 A;  2OWU A;  2PB6 A;  2OWK A;  2PB5 A;  2EJJ A;  2E8H A;  1PJQ A;  2EEQ A;  2DEK A;  2EL2 A;  2EJK A;  1VA0 A;  2PB4 A;  2E8Q A;  3NDC A;  1CBF A;  2EL3 A;  2EH4 A;  2HUV A;  2P2X A;  2ZVC A;  2E8R A;  2HUX A;  2P6L A;  1VHV A;  2ED5 A;  2PCM A;  2P9D A;  1WNG A;  2P6K A;  2DSH A;  2DXX A;  2ED3 A;  2OWG A;  3KWP A;  1PJT A;  2PCI A;  2BB3 A;  2EMR A; 
#chains in the Genus database with same CATH topology
 1VCE A;  4MUY A;  2E7R A;  2DSI A;  2P6I A;  2EHC A;  3SZL A;  2EJZ A;  3F7T A;  3KEM A;  3NEI A;  2DSG A;  2EH2 A;  2E07 A;  3FQ6 A;  2OWF A;  2Z6R A;  2EH5 A;  2DXW A;  2EHL A;  2DXV A;  2P5F A;  2E08 A;  2EMU A;  2PCH A;  2EK2 A;  2QBU A;  2E0N A;  4E16 A;  2EKA A;  2EL1 A;  2EGB A;  2DV3 A;  3DNF A;  2ELD A;  3ZGL A;  3URK A;  1WDE A;  2YBO A;  2EK4 A;  3ZGN A;  5HW4 A;  1VE2 A;  3FFY A;  2P6D A;  2ZVB A;  2HUT A;  2P5C A;  3NUT A;  2E4N A;  2ELE A;  3SZU A;  2PCK A;  2EGL A;  2OWV A;  2EK3 A;  1V9A A;  3KEF A;  2E8S A;  2HUQ A;  2NPN A;  3T0G A;  3ND1 A;  4H4D A;  2EL0 A;  2HR8 A;  4MV0 A;  1WYZ A;  2DV5 A;  3UV3 A;  1PJS A;  2DV4 A;  2EK7 A;  2YBQ A;  2EN5 A;  1S4D A;  2DV7 A;  2PCA A;  2E15 A;  2PCG A;  3UTC A;  2E17 A;  2EGS A;  2E0K A;  3I4T A;  3HH1 A;  4MV5 A;  2ENI A;  4H4C A;  3T0F A;  3TIX B;  2CBF A;  2E4R A;  2E16 A;  2KYY A;  2OWU A;  2PB6 A;  2OWK A;  3UTD A;  2PB5 A;  2EJJ A;  2E8H A;  1PJQ A;  2EEQ A;  2DEK A;  2EL2 A;  3KE8 A;  2EJK A;  1VA0 A;  2PB4 A;  2E8Q A;  4N7B A;  3NDC A;  1CBF A;  2EL3 A;  3SZO A;  2EH4 A;  2HUV A;  4MUX A;  2P2X A;  2ZVC A;  3UV7 A;  2E8R A;  3KEL A;  3UWM A;  2HUX A;  2P6L A;  3KE9 A;  3LMM A;  1VHV A;  2ED5 A;  2PCM A;  2P9D A;  1WNG A;  2P6K A;  2DSH A;  2DXX A;  4EB3 A;  4H4E A;  2ED3 A;  2OWG A;  3KWP A;  3UV6 A;  1PJT A;  2PCI A;  2BB3 A;  2EMR A; 
#chains in the Genus database with same CATH homology
 1VCE A;  4MUY A;  2E7R A;  2DSI A;  2P6I A;  2EHC A;  3SZL A;  2EJZ A;  3F7T A;  3KEM A;  3NEI A;  2DSG A;  2EH2 A;  2E07 A;  3FQ6 A;  2OWF A;  2Z6R A;  2EH5 A;  2DXW A;  2EHL A;  2DXV A;  2P5F A;  2E08 A;  2EMU A;  2PCH A;  2EK2 A;  2QBU A;  2E0N A;  4E16 A;  2EKA A;  2EL1 A;  2EGB A;  2DV3 A;  3DNF A;  2ELD A;  3ZGL A;  3URK A;  1WDE A;  2YBO A;  2EK4 A;  3ZGN A;  5HW4 A;  1VE2 A;  3FFY A;  2P6D A;  2ZVB A;  2HUT A;  2P5C A;  3NUT A;  2E4N A;  2ELE A;  3SZU A;  2PCK A;  2EGL A;  2OWV A;  2EK3 A;  1V9A A;  3KEF A;  2E8S A;  2HUQ A;  2NPN A;  3T0G A;  3ND1 A;  4H4D A;  2EL0 A;  2HR8 A;  4MV0 A;  1WYZ A;  2DV5 A;  3UV3 A;  1PJS A;  2DV4 A;  2EK7 A;  2YBQ A;  2EN5 A;  1S4D A;  2DV7 A;  2PCA A;  2E15 A;  2PCG A;  3UTC A;  2E17 A;  2EGS A;  2E0K A;  3I4T A;  3HH1 A;  4MV5 A;  2ENI A;  4H4C A;  3T0F A;  3TIX B;  2CBF A;  2E4R A;  2E16 A;  2KYY A;  2OWU A;  2PB6 A;  2OWK A;  3UTD A;  2PB5 A;  2EJJ A;  2E8H A;  1PJQ A;  2EEQ A;  2DEK A;  2EL2 A;  3KE8 A;  2EJK A;  1VA0 A;  2PB4 A;  2E8Q A;  4N7B A;  3NDC A;  1CBF A;  2EL3 A;  3SZO A;  2EH4 A;  2HUV A;  4MUX A;  2P2X A;  2ZVC A;  3UV7 A;  2E8R A;  3KEL A;  3UWM A;  2HUX A;  2P6L A;  3KE9 A;  3LMM A;  1VHV A;  2ED5 A;  2PCM A;  2P9D A;  1WNG A;  2P6K A;  2DSH A;  2DXX A;  4EB3 A;  4H4E A;  2ED3 A;  2OWG A;  3KWP A;  3UV6 A;  1PJT A;  2PCI A;  2BB3 A;  2EMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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