2OWVA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSMYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 77
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owvA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owvA01
2PCIA 3KWPA 2ED3A 2ED5A 2E15A 2EK7A 2EHCA 3NDCA 2EEQA 2PB6A 2DSIA 2DSGA 1CBFA 2E07A 2DV5A 2PCGA 1VA0A 2EHLA 2OWKA 2OWGA 2OWVA 2P5CA 3I4TA 2Z6RA 2CBFA 2P6LA 1PJSA 2ELDA 2PCAA 2E08A 2DV4A 1VHVA 2ENIA 2E8RA 2P6IA 3NEIA 2YBQA 1WDEA 2PCKA 2PCHA 1S4DA 2E0KA 2EJKA 1PJQA 2EL1A 2E8QA 2OWUA 2PCMA 1V9AA 2QBUA 2E0NA 2E4RA 2EJJA 2OWFA 2EL3A 1VE2A 2PB4A 2E8SA 2DXVA 4E16A 2DV7A 2YBOA 3NUTA 3FFYA 3HH1A 2DXWA 2ELEA 2HUQA 2P6KA 2EMUA 1VCEA 2EGSA 5HW4A 2DSHA 2P6DA 2EJZA 2EKAA 2EGBA 2BB3A 2E4NA 1WNGA 2ZVCA 2E17A 2ZVBA 2P2XA 2NPNA 2DV3A 2EK3A 2EK2A 2EH2A 2HUXA 2EL2A 2DEKA 2HUTA 2EMRA 2E8HA 2EH4A 3ND1A 2E7RA 2P9DA 3FQ6A 2P5FA 2EGLA 2HR8A 1PJTA 2E16A 2HUVA 2EH5A 2DXXA 1WYZA 2PB5A 2EN5A 2EK4A 2EL0A
chains in the Genus database with same CATH superfamily
2PCIA 3KEMA 3SZLA 3T0GA 3KWPA 4MUXA 4MV5A 2ED3A 2ED5A 2E15A 2EK7A 2EHCA 3NDCA 2EEQA 2PB6A 2DSIA 2DSGA 1CBFA 2E07A 3SZUA 4H4DA 2DV5A 2PCGA 1VA0A 2EHLA 2OWKA 2OWGA 3UWMA 2OWVA 2P5CA 3I4TA 2Z6RA 2CBFA 2P6LA 1PJSA 2ELDA 2PCAA 2E08A 2DV4A 1VHVA 2ENIA 2E8RA 2P6IA 3NEIA 2YBQA 1WDEA 2PCKA 2PCHA 1S4DA 2E0KA 2EJKA 1PJQA 2EL1A 2E8QA 2OWUA 2PCMA 3KEFA 1V9AA 2QBUA 2E0NA 2E4RA 2EJJA 3DNFA 2OWFA 2EL3A 2KYYA 1VE2A 2PB4A 2E8SA 2DXVA 4E16A 3KELA 2DV7A 2YBOA 3NUTA 3FFYA 4H4CA 3T0FA 3HH1A 3URKA 2DXWA 2ELEA 2HUQA 2P6KA 3KE9A 2EMUA 1VCEA 2EGSA 5HW4A 2DSHA 2P6DA 2EJZA 2EKAA 2EGBA 2BB3A 2E4NA 4N7BA 1WNGA 2ZVCA 2E17A 2ZVBA 2P2XA 2NPNA 2DV3A 4MUYA 3ZGLA 2EK3A 2EK2A 2EH2A 2HUXA 3F7TA 2EL2A 4H4EA 2DEKA 2HUTA 2EMRA 3UV6A 3ZGNA 2E8HA 4MV0A 2EH4A 3ND1A 2E7RA 3SZOA 2P9DA 3FQ6A 3KE8A 2P5FA 3UTCA 3UTDA 2EGLA 2HR8A 1PJTA 2E16A 3UV7A 2HUVA 2EH5A 3LMMA 3TIXB 2DXXA 1WYZA 2PB5A 3UV3A 2EN5A 2EK4A 2EL0A 4EB3A
chains in the Genus database with same CATH topology
2PCIA 3KEMA 3SZLA 3T0GA 3KWPA 4MUXA 4MV5A 2ED3A 2ED5A 2E15A 2EK7A 2EHCA 3NDCA 2EEQA 2PB6A 2DSIA 2DSGA 1CBFA 2E07A 3SZUA 4H4DA 2DV5A 2PCGA 1VA0A 2EHLA 2OWKA 2OWGA 3UWMA 2OWVA 2P5CA 3I4TA 2Z6RA 2CBFA 2P6LA 1PJSA 2ELDA 2PCAA 2E08A 2DV4A 1VHVA 2ENIA 2E8RA 2P6IA 3NEIA 2YBQA 1WDEA 2PCKA 2PCHA 1S4DA 2E0KA 2EJKA 1PJQA 2EL1A 2E8QA 2OWUA 2PCMA 3KEFA 1V9AA 2QBUA 2E0NA 2E4RA 2EJJA 3DNFA 2OWFA 2EL3A 2KYYA 1VE2A 2PB4A 2E8SA 2DXVA 4E16A 3KELA 2DV7A 2YBOA 3NUTA 3FFYA 4H4CA 3T0FA 3HH1A 3URKA 2DXWA 2ELEA 2HUQA 2P6KA 3KE9A 2EMUA 1VCEA 2EGSA 5HW4A 2DSHA 2P6DA 2EJZA 2EKAA 2EGBA 2BB3A 2E4NA 4N7BA 1WNGA 2ZVCA 2E17A 2ZVBA 2P2XA 2NPNA 2DV3A 4MUYA 3ZGLA 2EK3A 2EK2A 2EH2A 2HUXA 3F7TA 2EL2A 4H4EA 2DEKA 2HUTA 2EMRA 3UV6A 3ZGNA 2E8HA 4MV0A 2EH4A 3ND1A 2E7RA 3SZOA 2P9DA 3FQ6A 3KE8A 2P5FA 3UTCA 3UTDA 2EGLA 2HR8A 1PJTA 2E16A 3UV7A 2HUVA 2EH5A 3LMMA 3TIXB 2DXXA 1WYZA 2PB5A 3UV3A 2EN5A 2EK4A 2EL0A 4EB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCI A;  3KWP A;  2ED3 A;  2ED5 A;  2E15 A;  2EK7 A;  2EHC A;  3NDC A;  2EEQ A;  2PB6 A;  2DSI A;  2DSG A;  1CBF A;  2E07 A;  2DV5 A;  2PCG A;  1VA0 A;  2EHL A;  2OWK A;  2OWG A;  2OWV A;  2P5C A;  3I4T A;  2Z6R A;  2CBF A;  2P6L A;  1PJS A;  2ELD A;  2PCA A;  2E08 A;  2DV4 A;  1VHV A;  2ENI A;  2E8R A;  2P6I A;  3NEI A;  2YBQ A;  1WDE A;  2PCK A;  2PCH A;  1S4D A;  2E0K A;  2EJK A;  1PJQ A;  2EL1 A;  2E8Q A;  2OWU A;  2PCM A;  1V9A A;  2QBU A;  2E0N A;  2E4R A;  2EJJ A;  2OWF A;  2EL3 A;  1VE2 A;  2PB4 A;  2E8S A;  2DXV A;  4E16 A;  2DV7 A;  2YBO A;  3NUT A;  3FFY A;  3HH1 A;  2DXW A;  2ELE A;  2HUQ A;  2P6K A;  2EMU A;  1VCE A;  2EGS A;  5HW4 A;  2DSH A;  2P6D A;  2EJZ A;  2EKA A;  2EGB A;  2BB3 A;  2E4N A;  1WNG A;  2ZVC A;  2E17 A;  2ZVB A;  2P2X A;  2NPN A;  2DV3 A;  2EK3 A;  2EK2 A;  2EH2 A;  2HUX A;  2EL2 A;  2DEK A;  2HUT A;  2EMR A;  2E8H A;  2EH4 A;  3ND1 A;  2E7R A;  2P9D A;  3FQ6 A;  2P5F A;  2EGL A;  2HR8 A;  1PJT A;  2E16 A;  2HUV A;  2EH5 A;  2DXX A;  1WYZ A;  2PB5 A;  2EN5 A;  2EK4 A;  2EL0 A; 
#chains in the Genus database with same CATH topology
 2PCI A;  3KEM A;  3SZL A;  3T0G A;  3KWP A;  4MUX A;  4MV5 A;  2ED3 A;  2ED5 A;  2E15 A;  2EK7 A;  2EHC A;  3NDC A;  2EEQ A;  2PB6 A;  2DSI A;  2DSG A;  1CBF A;  2E07 A;  3SZU A;  4H4D A;  2DV5 A;  2PCG A;  1VA0 A;  2EHL A;  2OWK A;  2OWG A;  3UWM A;  2OWV A;  2P5C A;  3I4T A;  2Z6R A;  2CBF A;  2P6L A;  1PJS A;  2ELD A;  2PCA A;  2E08 A;  2DV4 A;  1VHV A;  2ENI A;  2E8R A;  2P6I A;  3NEI A;  2YBQ A;  1WDE A;  2PCK A;  2PCH A;  1S4D A;  2E0K A;  2EJK A;  1PJQ A;  2EL1 A;  2E8Q A;  2OWU A;  2PCM A;  3KEF A;  1V9A A;  2QBU A;  2E0N A;  2E4R A;  2EJJ A;  3DNF A;  2OWF A;  2EL3 A;  2KYY A;  1VE2 A;  2PB4 A;  2E8S A;  2DXV A;  4E16 A;  3KEL A;  2DV7 A;  2YBO A;  3NUT A;  3FFY A;  4H4C A;  3T0F A;  3HH1 A;  3URK A;  2DXW A;  2ELE A;  2HUQ A;  2P6K A;  3KE9 A;  2EMU A;  1VCE A;  2EGS A;  5HW4 A;  2DSH A;  2P6D A;  2EJZ A;  2EKA A;  2EGB A;  2BB3 A;  2E4N A;  4N7B A;  1WNG A;  2ZVC A;  2E17 A;  2ZVB A;  2P2X A;  2NPN A;  2DV3 A;  4MUY A;  3ZGL A;  2EK3 A;  2EK2 A;  2EH2 A;  2HUX A;  3F7T A;  2EL2 A;  4H4E A;  2DEK A;  2HUT A;  2EMR A;  3UV6 A;  3ZGN A;  2E8H A;  4MV0 A;  2EH4 A;  3ND1 A;  2E7R A;  3SZO A;  2P9D A;  3FQ6 A;  3KE8 A;  2P5F A;  3UTC A;  3UTD A;  2EGL A;  2HR8 A;  1PJT A;  2E16 A;  3UV7 A;  2HUV A;  2EH5 A;  3LMM A;  3TIX B;  2DXX A;  1WYZ A;  2PB5 A;  3UV3 A;  2EN5 A;  2EK4 A;  2EL0 A;  4EB3 A; 
#chains in the Genus database with same CATH homology
 2PCI A;  3KEM A;  3SZL A;  3T0G A;  3KWP A;  4MUX A;  4MV5 A;  2ED3 A;  2ED5 A;  2E15 A;  2EK7 A;  2EHC A;  3NDC A;  2EEQ A;  2PB6 A;  2DSI A;  2DSG A;  1CBF A;  2E07 A;  3SZU A;  4H4D A;  2DV5 A;  2PCG A;  1VA0 A;  2EHL A;  2OWK A;  2OWG A;  3UWM A;  2OWV A;  2P5C A;  3I4T A;  2Z6R A;  2CBF A;  2P6L A;  1PJS A;  2ELD A;  2PCA A;  2E08 A;  2DV4 A;  1VHV A;  2ENI A;  2E8R A;  2P6I A;  3NEI A;  2YBQ A;  1WDE A;  2PCK A;  2PCH A;  1S4D A;  2E0K A;  2EJK A;  1PJQ A;  2EL1 A;  2E8Q A;  2OWU A;  2PCM A;  3KEF A;  1V9A A;  2QBU A;  2E0N A;  2E4R A;  2EJJ A;  3DNF A;  2OWF A;  2EL3 A;  2KYY A;  1VE2 A;  2PB4 A;  2E8S A;  2DXV A;  4E16 A;  3KEL A;  2DV7 A;  2YBO A;  3NUT A;  3FFY A;  4H4C A;  3T0F A;  3HH1 A;  3URK A;  2DXW A;  2ELE A;  2HUQ A;  2P6K A;  3KE9 A;  2EMU A;  1VCE A;  2EGS A;  5HW4 A;  2DSH A;  2P6D A;  2EJZ A;  2EKA A;  2EGB A;  2BB3 A;  2E4N A;  4N7B A;  1WNG A;  2ZVC A;  2E17 A;  2ZVB A;  2P2X A;  2NPN A;  2DV3 A;  4MUY A;  3ZGL A;  2EK3 A;  2EK2 A;  2EH2 A;  2HUX A;  3F7T A;  2EL2 A;  4H4E A;  2DEK A;  2HUT A;  2EMR A;  3UV6 A;  3ZGN A;  2E8H A;  4MV0 A;  2EH4 A;  3ND1 A;  2E7R A;  3SZO A;  2P9D A;  3FQ6 A;  3KE8 A;  2P5F A;  3UTC A;  3UTD A;  2EGL A;  2HR8 A;  1PJT A;  2E16 A;  3UV7 A;  2HUV A;  2EH5 A;  3LMM A;  3TIX B;  2DXX A;  1WYZ A;  2PB5 A;  3UV3 A;  2EN5 A;  2EK4 A;  2EL0 A;  4EB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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