2EKAA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l202m)
Total Genus 85
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTMVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L202M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ekaA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ekaA01
2DEKA 2OWGA 2ENIA 2ELEA 2E07A 2EN5A 2E15A 1S4DA 5HW4A 1PJSA 2EMUA 2P9DA 2YBOA 2E0NA 2EHLA 2EL1A 2P5CA 3NUTA 2HUXA 2EGSA 2HR8A 2ED5A 2E7RA 2DXVA 2QBUA 2EJKA 1PJTA 2EJJA 2ZVBA 2E17A 2E16A 2P6DA 2PB4A 2YBQA 2EK2A 2EK7A 3ND1A 2NPNA 2DXWA 2EL2A 2EKAA 2P5FA 1WNGA 2PCHA 2EL3A 2EH5A 3I4TA 2EK3A 2HUQA 2OWFA 1WYZA 2E4NA 2E8HA 2P6LA 2PB5A 2ZVCA 2EGBA 2EJZA 2DV5A 2DV7A 2OWUA 2EEQA 2EHCA 2PCMA 2PCIA 2E08A 2DV3A 1PJQA 1VHVA 3NDCA 1VE2A 1CBFA 2EGLA 2P6IA 2Z6RA 2E8SA 2BB3A 2DSGA 2E8QA 2EK4A 2PCAA 2HUTA 3HH1A 2ELDA 2OWKA 2P6KA 3KWPA 3NEIA 1VCEA 2PCKA 2E0KA 3FQ6A 2DSIA 1WDEA 1V9AA 2E4RA 2HUVA 2PB6A 2DXXA 2P2XA 2EH4A 2EH2A 2EMRA 2PCGA 1VA0A 2CBFA 2DV4A 2OWVA 2E8RA 3FFYA 2ED3A 4E16A 2DSHA 2EL0A
chains in the Genus database with same CATH superfamily
2DEKA 2OWGA 3SZLA 2ENIA 2ELEA 3T0FA 2E07A 2EN5A 2E15A 1S4DA 5HW4A 1PJSA 2EMUA 2P9DA 2YBOA 2E0NA 2EHLA 2EL1A 2P5CA 3NUTA 2HUXA 2EGSA 2HR8A 2ED5A 3UTCA 2E7RA 2DXVA 3KEFA 2KYYA 4H4CA 2QBUA 3T0GA 4MUYA 2EJKA 1PJTA 2EJJA 2ZVBA 2E17A 2E16A 2P6DA 2PB4A 2YBQA 2EK2A 2EK7A 3UV6A 3ND1A 2NPNA 2DXWA 2EL2A 4MUXA 3TIXB 3F7TA 2EKAA 2P5FA 3SZOA 3KELA 4H4EA 1WNGA 2PCHA 2EL3A 2EH5A 3I4TA 2EK3A 2HUQA 2OWFA 1WYZA 2E4NA 2E8HA 2P6LA 2PB5A 2ZVCA 4MV5A 2EGBA 2EJZA 2DV5A 2DV7A 2OWUA 2EEQA 2EHCA 2PCMA 2PCIA 2E08A 2DV3A 1PJQA 1VHVA 3KE8A 3NDCA 1VE2A 3LMMA 1CBFA 2EGLA 2P6IA 2Z6RA 2E8SA 2BB3A 2DSGA 2E8QA 2EK4A 2PCAA 3UWMA 2HUTA 3ZGLA 3HH1A 4MV0A 2ELDA 2OWKA 3ZGNA 2P6KA 4H4DA 3KWPA 3NEIA 3KE9A 3UV7A 1VCEA 2PCKA 2E0KA 3DNFA 3FQ6A 2DSIA 4EB3A 1WDEA 1V9AA 2E4RA 3UV3A 2HUVA 2PB6A 2DXXA 3UTDA 2P2XA 2EH4A 2EH2A 2EMRA 3URKA 3SZUA 2PCGA 1VA0A 2CBFA 2DV4A 2OWVA 2E8RA 3FFYA 2ED3A 4E16A 2DSHA 2EL0A 4N7BA 3KEMA
chains in the Genus database with same CATH topology
2DEKA 2OWGA 3SZLA 2ENIA 2ELEA 3T0FA 2E07A 2EN5A 2E15A 1S4DA 5HW4A 1PJSA 2EMUA 2P9DA 2YBOA 2E0NA 2EHLA 2EL1A 2P5CA 3NUTA 2HUXA 2EGSA 2HR8A 2ED5A 3UTCA 2E7RA 2DXVA 3KEFA 2KYYA 4H4CA 2QBUA 3T0GA 4MUYA 2EJKA 1PJTA 2EJJA 2ZVBA 2E17A 2E16A 2P6DA 2PB4A 2YBQA 2EK2A 2EK7A 3UV6A 3ND1A 2NPNA 2DXWA 2EL2A 4MUXA 3TIXB 3F7TA 2EKAA 2P5FA 3SZOA 3KELA 4H4EA 1WNGA 2PCHA 2EL3A 2EH5A 3I4TA 2EK3A 2HUQA 2OWFA 1WYZA 2E4NA 2E8HA 2P6LA 2PB5A 2ZVCA 4MV5A 2EGBA 2EJZA 2DV5A 2DV7A 2OWUA 2EEQA 2EHCA 2PCMA 2PCIA 2E08A 2DV3A 1PJQA 1VHVA 3KE8A 3NDCA 1VE2A 3LMMA 1CBFA 2EGLA 2P6IA 2Z6RA 2E8SA 2BB3A 2DSGA 2E8QA 2EK4A 2PCAA 3UWMA 2HUTA 3ZGLA 3HH1A 4MV0A 2ELDA 2OWKA 3ZGNA 2P6KA 4H4DA 3KWPA 3NEIA 3KE9A 3UV7A 1VCEA 2PCKA 2E0KA 3DNFA 3FQ6A 2DSIA 4EB3A 1WDEA 1V9AA 2E4RA 3UV3A 2HUVA 2PB6A 2DXXA 3UTDA 2P2XA 2EH4A 2EH2A 2EMRA 3URKA 3SZUA 2PCGA 1VA0A 2CBFA 2DV4A 2OWVA 2E8RA 3FFYA 2ED3A 4E16A 2DSHA 2EL0A 4N7BA 3KEMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DEK A;  2OWG A;  2ENI A;  2ELE A;  2E07 A;  2EN5 A;  2E15 A;  1S4D A;  5HW4 A;  1PJS A;  2EMU A;  2P9D A;  2YBO A;  2E0N A;  2EHL A;  2EL1 A;  2P5C A;  3NUT A;  2HUX A;  2EGS A;  2HR8 A;  2ED5 A;  2E7R A;  2DXV A;  2QBU A;  2EJK A;  1PJT A;  2EJJ A;  2ZVB A;  2E17 A;  2E16 A;  2P6D A;  2PB4 A;  2YBQ A;  2EK2 A;  2EK7 A;  3ND1 A;  2NPN A;  2DXW A;  2EL2 A;  2EKA A;  2P5F A;  1WNG A;  2PCH A;  2EL3 A;  2EH5 A;  3I4T A;  2EK3 A;  2HUQ A;  2OWF A;  1WYZ A;  2E4N A;  2E8H A;  2P6L A;  2PB5 A;  2ZVC A;  2EGB A;  2EJZ A;  2DV5 A;  2DV7 A;  2OWU A;  2EEQ A;  2EHC A;  2PCM A;  2PCI A;  2E08 A;  2DV3 A;  1PJQ A;  1VHV A;  3NDC A;  1VE2 A;  1CBF A;  2EGL A;  2P6I A;  2Z6R A;  2E8S A;  2BB3 A;  2DSG A;  2E8Q A;  2EK4 A;  2PCA A;  2HUT A;  3HH1 A;  2ELD A;  2OWK A;  2P6K A;  3KWP A;  3NEI A;  1VCE A;  2PCK A;  2E0K A;  3FQ6 A;  2DSI A;  1WDE A;  1V9A A;  2E4R A;  2HUV A;  2PB6 A;  2DXX A;  2P2X A;  2EH4 A;  2EH2 A;  2EMR A;  2PCG A;  1VA0 A;  2CBF A;  2DV4 A;  2OWV A;  2E8R A;  3FFY A;  2ED3 A;  4E16 A;  2DSH A;  2EL0 A; 
#chains in the Genus database with same CATH topology
 2DEK A;  2OWG A;  3SZL A;  2ENI A;  2ELE A;  3T0F A;  2E07 A;  2EN5 A;  2E15 A;  1S4D A;  5HW4 A;  1PJS A;  2EMU A;  2P9D A;  2YBO A;  2E0N A;  2EHL A;  2EL1 A;  2P5C A;  3NUT A;  2HUX A;  2EGS A;  2HR8 A;  2ED5 A;  3UTC A;  2E7R A;  2DXV A;  3KEF A;  2KYY A;  4H4C A;  2QBU A;  3T0G A;  4MUY A;  2EJK A;  1PJT A;  2EJJ A;  2ZVB A;  2E17 A;  2E16 A;  2P6D A;  2PB4 A;  2YBQ A;  2EK2 A;  2EK7 A;  3UV6 A;  3ND1 A;  2NPN A;  2DXW A;  2EL2 A;  4MUX A;  3TIX B;  3F7T A;  2EKA A;  2P5F A;  3SZO A;  3KEL A;  4H4E A;  1WNG A;  2PCH A;  2EL3 A;  2EH5 A;  3I4T A;  2EK3 A;  2HUQ A;  2OWF A;  1WYZ A;  2E4N A;  2E8H A;  2P6L A;  2PB5 A;  2ZVC A;  4MV5 A;  2EGB A;  2EJZ A;  2DV5 A;  2DV7 A;  2OWU A;  2EEQ A;  2EHC A;  2PCM A;  2PCI A;  2E08 A;  2DV3 A;  1PJQ A;  1VHV A;  3KE8 A;  3NDC A;  1VE2 A;  3LMM A;  1CBF A;  2EGL A;  2P6I A;  2Z6R A;  2E8S A;  2BB3 A;  2DSG A;  2E8Q A;  2EK4 A;  2PCA A;  3UWM A;  2HUT A;  3ZGL A;  3HH1 A;  4MV0 A;  2ELD A;  2OWK A;  3ZGN A;  2P6K A;  4H4D A;  3KWP A;  3NEI A;  3KE9 A;  3UV7 A;  1VCE A;  2PCK A;  2E0K A;  3DNF A;  3FQ6 A;  2DSI A;  4EB3 A;  1WDE A;  1V9A A;  2E4R A;  3UV3 A;  2HUV A;  2PB6 A;  2DXX A;  3UTD A;  2P2X A;  2EH4 A;  2EH2 A;  2EMR A;  3URK A;  3SZU A;  2PCG A;  1VA0 A;  2CBF A;  2DV4 A;  2OWV A;  2E8R A;  3FFY A;  2ED3 A;  4E16 A;  2DSH A;  2EL0 A;  4N7B A;  3KEM A; 
#chains in the Genus database with same CATH homology
 2DEK A;  2OWG A;  3SZL A;  2ENI A;  2ELE A;  3T0F A;  2E07 A;  2EN5 A;  2E15 A;  1S4D A;  5HW4 A;  1PJS A;  2EMU A;  2P9D A;  2YBO A;  2E0N A;  2EHL A;  2EL1 A;  2P5C A;  3NUT A;  2HUX A;  2EGS A;  2HR8 A;  2ED5 A;  3UTC A;  2E7R A;  2DXV A;  3KEF A;  2KYY A;  4H4C A;  2QBU A;  3T0G A;  4MUY A;  2EJK A;  1PJT A;  2EJJ A;  2ZVB A;  2E17 A;  2E16 A;  2P6D A;  2PB4 A;  2YBQ A;  2EK2 A;  2EK7 A;  3UV6 A;  3ND1 A;  2NPN A;  2DXW A;  2EL2 A;  4MUX A;  3TIX B;  3F7T A;  2EKA A;  2P5F A;  3SZO A;  3KEL A;  4H4E A;  1WNG A;  2PCH A;  2EL3 A;  2EH5 A;  3I4T A;  2EK3 A;  2HUQ A;  2OWF A;  1WYZ A;  2E4N A;  2E8H A;  2P6L A;  2PB5 A;  2ZVC A;  4MV5 A;  2EGB A;  2EJZ A;  2DV5 A;  2DV7 A;  2OWU A;  2EEQ A;  2EHC A;  2PCM A;  2PCI A;  2E08 A;  2DV3 A;  1PJQ A;  1VHV A;  3KE8 A;  3NDC A;  1VE2 A;  3LMM A;  1CBF A;  2EGL A;  2P6I A;  2Z6R A;  2E8S A;  2BB3 A;  2DSG A;  2E8Q A;  2EK4 A;  2PCA A;  3UWM A;  2HUT A;  3ZGL A;  3HH1 A;  4MV0 A;  2ELD A;  2OWK A;  3ZGN A;  2P6K A;  4H4D A;  3KWP A;  3NEI A;  3KE9 A;  3UV7 A;  1VCE A;  2PCK A;  2E0K A;  3DNF A;  3FQ6 A;  2DSI A;  4EB3 A;  1WDE A;  1V9A A;  2E4R A;  3UV3 A;  2HUV A;  2PB6 A;  2DXX A;  3UTD A;  2P2X A;  2EH4 A;  2EH2 A;  2EMR A;  3URK A;  3SZU A;  2PCG A;  1VA0 A;  2CBF A;  2DV4 A;  2OWV A;  2E8R A;  3FFY A;  2ED3 A;  4E16 A;  2DSH A;  2EL0 A;  4N7B A;  3KEM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...