1VHVA

Crystal structure of diphthine synthase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
251
structure length
251
Chain Sequence
SLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTPVNVIKANRSIDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPLHVMVVLAKTLHFMEFECLREFADAPAELERLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
molecule keywords diphthine synthase
total genus 81
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2003-12-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1vhvA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1vhvA01
2EGSA 2EN5A 2BB3A 2EK7A 2ELDA 1CBFA 2P5CA 2HUXA 3I4TA 2EHCA 3FFYA 2P6KA 2PCIA 1V9AA 2PCKA 2CBFA 1VCEA 2PCAA 2ED5A 2HUVA 2DXWA 2DV5A 2ED3A 2E4NA 2EJZA 2E15A 1PJQA 2PB4A 3FQ6A 2P6IA 2E16A 3NUTA 1VE2A 3KWPA 2ZVCA 2OWUA 2DSHA 2E8SA 2E07A 2HUTA 2EMRA 1WYZA 2EK4A 2Z6RA 3NDCA 2P6LA 2E7RA 2P5FA 2DEKA 3ND1A 2OWVA 5HW4A 2ZVBA 2EL1A 2EGBA 2EKAA 2PCMA 2E0KA 2EJJA 2YBOA 2EEQA 2E17A 2EH4A 2DSGA 2ENIA 1VA0A 1PJSA 2EHLA 2EL0A 1PJTA 3NEIA 2EH5A 2DSIA 2E08A 2OWFA 2EK3A 2P2XA 2E8RA 2DV7A 2PCHA 2EK2A 2OWKA 2E8QA 2P6DA 2E0NA 2EGLA 1WNGA 2DXVA 2DXXA 2E4RA 2NPNA 2EMUA 1VHVA 2PB6A 2QBUA 2ELEA 2E8HA 3HH1A 2DV3A 2OWGA 2HUQA 2PB5A 2EL2A 2PCGA 2YBQA 4E16A 2HR8A 2DV4A 2EH2A 1S4DA 1WDEA 2EL3A 2P9DA 2EJKA
chains in the Genus database with same CATH superfamily
2EGSA 2EN5A 2BB3A 2EK7A 3UTDA 2ELDA 1CBFA 2P5CA 3DNFA 2HUXA 3I4TA 2EHCA 3FFYA 2P6KA 2PCIA 3UV6A 1V9AA 2PCKA 2CBFA 3T0FA 1VCEA 3KE8A 2PCAA 2ED5A 2HUVA 2DXWA 2DV5A 3UTCA 2ED3A 2E4NA 2EJZA 2E15A 1PJQA 2PB4A 3FQ6A 2P6IA 4N7BA 3TIXB 2E16A 3NUTA 1VE2A 3KWPA 2ZVCA 2OWUA 2DSHA 2E8SA 2E07A 2HUTA 4MUXA 2EMRA 1WYZA 2EK4A 2Z6RA 2KYYA 3NDCA 2P6LA 2E7RA 2P5FA 2DEKA 3ND1A 4MV5A 2OWVA 3KELA 3UWMA 5HW4A 2ZVBA 2EL1A 4H4CA 3SZUA 3KE9A 2EGBA 2EKAA 4H4EA 2PCMA 2E0KA 2EJJA 2YBOA 2EEQA 2E17A 2EH4A 3UV7A 2DSGA 2ENIA 4MV0A 1VA0A 1PJSA 2EHLA 3KEFA 2EL0A 1PJTA 3NEIA 3UV3A 2EH5A 2DSIA 2E08A 2OWFA 2EK3A 2P2XA 3T0GA 2E8RA 2DV7A 2PCHA 2EK2A 2OWKA 2E8QA 2P6DA 2E0NA 4H4DA 3SZLA 2EGLA 1WNGA 2DXVA 2DXXA 2E4RA 2NPNA 3F7TA 2EMUA 1VHVA 2PB6A 3URKA 2QBUA 2ELEA 3ZGNA 3LMMA 4MUYA 2E8HA 3HH1A 4EB3A 2DV3A 2OWGA 2HUQA 2PB5A 2EL2A 2PCGA 2YBQA 4E16A 2HR8A 2DV4A 2EH2A 1S4DA 3ZGLA 1WDEA 2EL3A 3KEMA 2P9DA 3SZOA 2EJKA
chains in the Genus database with same CATH topology
2EGSA 2EN5A 2BB3A 2EK7A 3UTDA 2ELDA 1CBFA 2P5CA 3DNFA 2HUXA 3I4TA 2EHCA 3FFYA 2P6KA 2PCIA 3UV6A 1V9AA 2PCKA 2CBFA 3T0FA 1VCEA 3KE8A 2PCAA 2ED5A 2HUVA 2DXWA 2DV5A 3UTCA 2ED3A 2E4NA 2EJZA 2E15A 1PJQA 2PB4A 3FQ6A 2P6IA 4N7BA 3TIXB 2E16A 3NUTA 1VE2A 3KWPA 2ZVCA 2OWUA 2DSHA 2E8SA 2E07A 2HUTA 4MUXA 2EMRA 1WYZA 2EK4A 2Z6RA 2KYYA 3NDCA 2P6LA 2E7RA 2P5FA 2DEKA 3ND1A 4MV5A 2OWVA 3KELA 3UWMA 5HW4A 2ZVBA 2EL1A 4H4CA 3SZUA 3KE9A 2EGBA 2EKAA 4H4EA 2PCMA 2E0KA 2EJJA 2YBOA 2EEQA 2E17A 2EH4A 3UV7A 2DSGA 2ENIA 4MV0A 1VA0A 1PJSA 2EHLA 3KEFA 2EL0A 1PJTA 3NEIA 3UV3A 2EH5A 2DSIA 2E08A 2OWFA 2EK3A 2P2XA 3T0GA 2E8RA 2DV7A 2PCHA 2EK2A 2OWKA 2E8QA 2P6DA 2E0NA 4H4DA 3SZLA 2EGLA 1WNGA 2DXVA 2DXXA 2E4RA 2NPNA 3F7TA 2EMUA 1VHVA 2PB6A 3URKA 2QBUA 2ELEA 3ZGNA 3LMMA 4MUYA 2E8HA 3HH1A 4EB3A 2DV3A 2OWGA 2HUQA 2PB5A 2EL2A 2PCGA 2YBQA 4E16A 2HR8A 2DV4A 2EH2A 1S4DA 3ZGLA 1WDEA 2EL3A 3KEMA 2P9DA 3SZOA 2EJKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGS A;  2EN5 A;  2BB3 A;  2EK7 A;  2ELD A;  1CBF A;  2P5C A;  2HUX A;  3I4T A;  2EHC A;  3FFY A;  2P6K A;  2PCI A;  1V9A A;  2PCK A;  2CBF A;  1VCE A;  2PCA A;  2ED5 A;  2HUV A;  2DXW A;  2DV5 A;  2ED3 A;  2E4N A;  2EJZ A;  2E15 A;  1PJQ A;  2PB4 A;  3FQ6 A;  2P6I A;  2E16 A;  3NUT A;  1VE2 A;  3KWP A;  2ZVC A;  2OWU A;  2DSH A;  2E8S A;  2E07 A;  2HUT A;  2EMR A;  1WYZ A;  2EK4 A;  2Z6R A;  3NDC A;  2P6L A;  2E7R A;  2P5F A;  2DEK A;  3ND1 A;  2OWV A;  5HW4 A;  2ZVB A;  2EL1 A;  2EGB A;  2EKA A;  2PCM A;  2E0K A;  2EJJ A;  2YBO A;  2EEQ A;  2E17 A;  2EH4 A;  2DSG A;  2ENI A;  1VA0 A;  1PJS A;  2EHL A;  2EL0 A;  1PJT A;  3NEI A;  2EH5 A;  2DSI A;  2E08 A;  2OWF A;  2EK3 A;  2P2X A;  2E8R A;  2DV7 A;  2PCH A;  2EK2 A;  2OWK A;  2E8Q A;  2P6D A;  2E0N A;  2EGL A;  1WNG A;  2DXV A;  2DXX A;  2E4R A;  2NPN A;  2EMU A;  1VHV A;  2PB6 A;  2QBU A;  2ELE A;  2E8H A;  3HH1 A;  2DV3 A;  2OWG A;  2HUQ A;  2PB5 A;  2EL2 A;  2PCG A;  2YBQ A;  4E16 A;  2HR8 A;  2DV4 A;  2EH2 A;  1S4D A;  1WDE A;  2EL3 A;  2P9D A;  2EJK A; 
#chains in the Genus database with same CATH topology
 2EGS A;  2EN5 A;  2BB3 A;  2EK7 A;  3UTD A;  2ELD A;  1CBF A;  2P5C A;  3DNF A;  2HUX A;  3I4T A;  2EHC A;  3FFY A;  2P6K A;  2PCI A;  3UV6 A;  1V9A A;  2PCK A;  2CBF A;  3T0F A;  1VCE A;  3KE8 A;  2PCA A;  2ED5 A;  2HUV A;  2DXW A;  2DV5 A;  3UTC A;  2ED3 A;  2E4N A;  2EJZ A;  2E15 A;  1PJQ A;  2PB4 A;  3FQ6 A;  2P6I A;  4N7B A;  3TIX B;  2E16 A;  3NUT A;  1VE2 A;  3KWP A;  2ZVC A;  2OWU A;  2DSH A;  2E8S A;  2E07 A;  2HUT A;  4MUX A;  2EMR A;  1WYZ A;  2EK4 A;  2Z6R A;  2KYY A;  3NDC A;  2P6L A;  2E7R A;  2P5F A;  2DEK A;  3ND1 A;  4MV5 A;  2OWV A;  3KEL A;  3UWM A;  5HW4 A;  2ZVB A;  2EL1 A;  4H4C A;  3SZU A;  3KE9 A;  2EGB A;  2EKA A;  4H4E A;  2PCM A;  2E0K A;  2EJJ A;  2YBO A;  2EEQ A;  2E17 A;  2EH4 A;  3UV7 A;  2DSG A;  2ENI A;  4MV0 A;  1VA0 A;  1PJS A;  2EHL A;  3KEF A;  2EL0 A;  1PJT A;  3NEI A;  3UV3 A;  2EH5 A;  2DSI A;  2E08 A;  2OWF A;  2EK3 A;  2P2X A;  3T0G A;  2E8R A;  2DV7 A;  2PCH A;  2EK2 A;  2OWK A;  2E8Q A;  2P6D A;  2E0N A;  4H4D A;  3SZL A;  2EGL A;  1WNG A;  2DXV A;  2DXX A;  2E4R A;  2NPN A;  3F7T A;  2EMU A;  1VHV A;  2PB6 A;  3URK A;  2QBU A;  2ELE A;  3ZGN A;  3LMM A;  4MUY A;  2E8H A;  3HH1 A;  4EB3 A;  2DV3 A;  2OWG A;  2HUQ A;  2PB5 A;  2EL2 A;  2PCG A;  2YBQ A;  4E16 A;  2HR8 A;  2DV4 A;  2EH2 A;  1S4D A;  3ZGL A;  1WDE A;  2EL3 A;  3KEM A;  2P9D A;  3SZO A;  2EJK A; 
#chains in the Genus database with same CATH homology
 2EGS A;  2EN5 A;  2BB3 A;  2EK7 A;  3UTD A;  2ELD A;  1CBF A;  2P5C A;  3DNF A;  2HUX A;  3I4T A;  2EHC A;  3FFY A;  2P6K A;  2PCI A;  3UV6 A;  1V9A A;  2PCK A;  2CBF A;  3T0F A;  1VCE A;  3KE8 A;  2PCA A;  2ED5 A;  2HUV A;  2DXW A;  2DV5 A;  3UTC A;  2ED3 A;  2E4N A;  2EJZ A;  2E15 A;  1PJQ A;  2PB4 A;  3FQ6 A;  2P6I A;  4N7B A;  3TIX B;  2E16 A;  3NUT A;  1VE2 A;  3KWP A;  2ZVC A;  2OWU A;  2DSH A;  2E8S A;  2E07 A;  2HUT A;  4MUX A;  2EMR A;  1WYZ A;  2EK4 A;  2Z6R A;  2KYY A;  3NDC A;  2P6L A;  2E7R A;  2P5F A;  2DEK A;  3ND1 A;  4MV5 A;  2OWV A;  3KEL A;  3UWM A;  5HW4 A;  2ZVB A;  2EL1 A;  4H4C A;  3SZU A;  3KE9 A;  2EGB A;  2EKA A;  4H4E A;  2PCM A;  2E0K A;  2EJJ A;  2YBO A;  2EEQ A;  2E17 A;  2EH4 A;  3UV7 A;  2DSG A;  2ENI A;  4MV0 A;  1VA0 A;  1PJS A;  2EHL A;  3KEF A;  2EL0 A;  1PJT A;  3NEI A;  3UV3 A;  2EH5 A;  2DSI A;  2E08 A;  2OWF A;  2EK3 A;  2P2X A;  3T0G A;  2E8R A;  2DV7 A;  2PCH A;  2EK2 A;  2OWK A;  2E8Q A;  2P6D A;  2E0N A;  4H4D A;  3SZL A;  2EGL A;  1WNG A;  2DXV A;  2DXX A;  2E4R A;  2NPN A;  3F7T A;  2EMU A;  1VHV A;  2PB6 A;  3URK A;  2QBU A;  2ELE A;  3ZGN A;  3LMM A;  4MUY A;  2E8H A;  3HH1 A;  4EB3 A;  2DV3 A;  2OWG A;  2HUQ A;  2PB5 A;  2EL2 A;  2PCG A;  2YBQ A;  4E16 A;  2HR8 A;  2DV4 A;  2EH2 A;  1S4D A;  3ZGL A;  1WDE A;  2EL3 A;  3KEM A;  2P9D A;  3SZO A;  2EJK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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