2EH2A

Mutant v18m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITMKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant V18M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh2A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh2A01
2PCHA 2EH5A 5HW4A 2EKAA 2E0KA 2PCIA 2ENIA 2EHLA 1PJSA 2E8SA 2P9DA 2QBUA 2E4NA 1VE2A 2EK4A 2EGSA 3FFYA 2EGBA 2OWKA 2OWFA 3HH1A 2NPNA 3NUTA 3ND1A 2PB6A 2E15A 1WNGA 2E4RA 2E07A 2DSIA 2P6LA 3FQ6A 2DXVA 2EJZA 1VHVA 2HUVA 2P2XA 2EJKA 2EK3A 3KWPA 3NDCA 2DV5A 2YBOA 1V9AA 2E8HA 2HUTA 2DSHA 2PCAA 1S4DA 3NEIA 2EL2A 2P6IA 2E16A 2E8QA 1CBFA 2OWGA 2EL0A 2PCMA 1WYZA 2ZVBA 1PJTA 2EGLA 2E08A 1VA0A 2EL1A 2ELEA 1WDEA 2ED5A 2HUXA 2DXWA 2EEQA 2ED3A 2P6DA 4E16A 2EJJA 1PJQA 2HR8A 2PCGA 2BB3A 2DSGA 2EMRA 2DXXA 2P5CA 2DV7A 2EK2A 2HUQA 2EMUA 2PCKA 2CBFA 2EN5A 1VCEA 2EHCA 2EH2A 2ELDA 2ZVCA 2PB4A 2P5FA 2OWVA 2E0NA 2E17A 2EL3A 2DV3A 2EH4A 2P6KA 2DEKA 2E7RA 3I4TA 2DV4A 2E8RA 2PB5A 2Z6RA 2EK7A 2YBQA 2OWUA
chains in the Genus database with same CATH superfamily
2PCHA 2EH5A 5HW4A 2EKAA 2E0KA 2PCIA 2ENIA 2EHLA 1PJSA 2E8SA 3KEMA 2P9DA 3KELA 2QBUA 2E4NA 1VE2A 2EK4A 2EGSA 3FFYA 2EGBA 2OWKA 2OWFA 3HH1A 2NPNA 3NUTA 3ND1A 2PB6A 2E15A 1WNGA 3ZGLA 2E4RA 2E07A 3DNFA 3SZOA 2DSIA 4MV0A 2P6LA 3FQ6A 2DXVA 2EJZA 1VHVA 2HUVA 2P2XA 3F7TA 2EJKA 2EK3A 3KWPA 3NDCA 2DV5A 2YBOA 1V9AA 3URKA 3UV6A 2E8HA 2HUTA 2DSHA 2PCAA 1S4DA 3KE9A 3NEIA 3UTCA 2EL2A 4EB3A 2P6IA 2E16A 2E8QA 1CBFA 2OWGA 2EL0A 2PCMA 1WYZA 2ZVBA 1PJTA 3UWMA 2EGLA 3KE8A 2E08A 1VA0A 2EL1A 4MV5A 2ELEA 1WDEA 2ED5A 2HUXA 2DXWA 2EEQA 2ED3A 3SZUA 2P6DA 4E16A 2EJJA 1PJQA 2HR8A 2PCGA 4MUYA 2BB3A 2DSGA 2EMRA 2DXXA 3ZGNA 2P5CA 4H4DA 2DV7A 2EK2A 2HUQA 3UTDA 2EMUA 2PCKA 3T0GA 2CBFA 3KEFA 2KYYA 2EN5A 1VCEA 4H4EA 4N7BA 3UV3A 3SZLA 2EHCA 2EH2A 2ELDA 2ZVCA 3LMMA 2PB4A 3T0FA 2P5FA 2OWVA 2E0NA 4H4CA 2E17A 2EL3A 4MUXA 2DV3A 2EH4A 2P6KA 2DEKA 3TIXB 2E7RA 3I4TA 2DV4A 2E8RA 2PB5A 2Z6RA 2EK7A 3UV7A 2YBQA 2OWUA
chains in the Genus database with same CATH topology
2PCHA 2EH5A 5HW4A 2EKAA 2E0KA 2PCIA 2ENIA 2EHLA 1PJSA 2E8SA 3KEMA 2P9DA 3KELA 2QBUA 2E4NA 1VE2A 2EK4A 2EGSA 3FFYA 2EGBA 2OWKA 2OWFA 3HH1A 2NPNA 3NUTA 3ND1A 2PB6A 2E15A 1WNGA 3ZGLA 2E4RA 2E07A 3DNFA 3SZOA 2DSIA 4MV0A 2P6LA 3FQ6A 2DXVA 2EJZA 1VHVA 2HUVA 2P2XA 3F7TA 2EJKA 2EK3A 3KWPA 3NDCA 2DV5A 2YBOA 1V9AA 3URKA 3UV6A 2E8HA 2HUTA 2DSHA 2PCAA 1S4DA 3KE9A 3NEIA 3UTCA 2EL2A 4EB3A 2P6IA 2E16A 2E8QA 1CBFA 2OWGA 2EL0A 2PCMA 1WYZA 2ZVBA 1PJTA 3UWMA 2EGLA 3KE8A 2E08A 1VA0A 2EL1A 4MV5A 2ELEA 1WDEA 2ED5A 2HUXA 2DXWA 2EEQA 2ED3A 3SZUA 2P6DA 4E16A 2EJJA 1PJQA 2HR8A 2PCGA 4MUYA 2BB3A 2DSGA 2EMRA 2DXXA 3ZGNA 2P5CA 4H4DA 2DV7A 2EK2A 2HUQA 3UTDA 2EMUA 2PCKA 3T0GA 2CBFA 3KEFA 2KYYA 2EN5A 1VCEA 4H4EA 4N7BA 3UV3A 3SZLA 2EHCA 2EH2A 2ELDA 2ZVCA 3LMMA 2PB4A 3T0FA 2P5FA 2OWVA 2E0NA 4H4CA 2E17A 2EL3A 4MUXA 2DV3A 2EH4A 2P6KA 2DEKA 3TIXB 2E7RA 3I4TA 2DV4A 2E8RA 2PB5A 2Z6RA 2EK7A 3UV7A 2YBQA 2OWUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCH A;  2EH5 A;  5HW4 A;  2EKA A;  2E0K A;  2PCI A;  2ENI A;  2EHL A;  1PJS A;  2E8S A;  2P9D A;  2QBU A;  2E4N A;  1VE2 A;  2EK4 A;  2EGS A;  3FFY A;  2EGB A;  2OWK A;  2OWF A;  3HH1 A;  2NPN A;  3NUT A;  3ND1 A;  2PB6 A;  2E15 A;  1WNG A;  2E4R A;  2E07 A;  2DSI A;  2P6L A;  3FQ6 A;  2DXV A;  2EJZ A;  1VHV A;  2HUV A;  2P2X A;  2EJK A;  2EK3 A;  3KWP A;  3NDC A;  2DV5 A;  2YBO A;  1V9A A;  2E8H A;  2HUT A;  2DSH A;  2PCA A;  1S4D A;  3NEI A;  2EL2 A;  2P6I A;  2E16 A;  2E8Q A;  1CBF A;  2OWG A;  2EL0 A;  2PCM A;  1WYZ A;  2ZVB A;  1PJT A;  2EGL A;  2E08 A;  1VA0 A;  2EL1 A;  2ELE A;  1WDE A;  2ED5 A;  2HUX A;  2DXW A;  2EEQ A;  2ED3 A;  2P6D A;  4E16 A;  2EJJ A;  1PJQ A;  2HR8 A;  2PCG A;  2BB3 A;  2DSG A;  2EMR A;  2DXX A;  2P5C A;  2DV7 A;  2EK2 A;  2HUQ A;  2EMU A;  2PCK A;  2CBF A;  2EN5 A;  1VCE A;  2EHC A;  2EH2 A;  2ELD A;  2ZVC A;  2PB4 A;  2P5F A;  2OWV A;  2E0N A;  2E17 A;  2EL3 A;  2DV3 A;  2EH4 A;  2P6K A;  2DEK A;  2E7R A;  3I4T A;  2DV4 A;  2E8R A;  2PB5 A;  2Z6R A;  2EK7 A;  2YBQ A;  2OWU A; 
#chains in the Genus database with same CATH topology
 2PCH A;  2EH5 A;  5HW4 A;  2EKA A;  2E0K A;  2PCI A;  2ENI A;  2EHL A;  1PJS A;  2E8S A;  3KEM A;  2P9D A;  3KEL A;  2QBU A;  2E4N A;  1VE2 A;  2EK4 A;  2EGS A;  3FFY A;  2EGB A;  2OWK A;  2OWF A;  3HH1 A;  2NPN A;  3NUT A;  3ND1 A;  2PB6 A;  2E15 A;  1WNG A;  3ZGL A;  2E4R A;  2E07 A;  3DNF A;  3SZO A;  2DSI A;  4MV0 A;  2P6L A;  3FQ6 A;  2DXV A;  2EJZ A;  1VHV A;  2HUV A;  2P2X A;  3F7T A;  2EJK A;  2EK3 A;  3KWP A;  3NDC A;  2DV5 A;  2YBO A;  1V9A A;  3URK A;  3UV6 A;  2E8H A;  2HUT A;  2DSH A;  2PCA A;  1S4D A;  3KE9 A;  3NEI A;  3UTC A;  2EL2 A;  4EB3 A;  2P6I A;  2E16 A;  2E8Q A;  1CBF A;  2OWG A;  2EL0 A;  2PCM A;  1WYZ A;  2ZVB A;  1PJT A;  3UWM A;  2EGL A;  3KE8 A;  2E08 A;  1VA0 A;  2EL1 A;  4MV5 A;  2ELE A;  1WDE A;  2ED5 A;  2HUX A;  2DXW A;  2EEQ A;  2ED3 A;  3SZU A;  2P6D A;  4E16 A;  2EJJ A;  1PJQ A;  2HR8 A;  2PCG A;  4MUY A;  2BB3 A;  2DSG A;  2EMR A;  2DXX A;  3ZGN A;  2P5C A;  4H4D A;  2DV7 A;  2EK2 A;  2HUQ A;  3UTD A;  2EMU A;  2PCK A;  3T0G A;  2CBF A;  3KEF A;  2KYY A;  2EN5 A;  1VCE A;  4H4E A;  4N7B A;  3UV3 A;  3SZL A;  2EHC A;  2EH2 A;  2ELD A;  2ZVC A;  3LMM A;  2PB4 A;  3T0F A;  2P5F A;  2OWV A;  2E0N A;  4H4C A;  2E17 A;  2EL3 A;  4MUX A;  2DV3 A;  2EH4 A;  2P6K A;  2DEK A;  3TIX B;  2E7R A;  3I4T A;  2DV4 A;  2E8R A;  2PB5 A;  2Z6R A;  2EK7 A;  3UV7 A;  2YBQ A;  2OWU A; 
#chains in the Genus database with same CATH homology
 2PCH A;  2EH5 A;  5HW4 A;  2EKA A;  2E0K A;  2PCI A;  2ENI A;  2EHL A;  1PJS A;  2E8S A;  3KEM A;  2P9D A;  3KEL A;  2QBU A;  2E4N A;  1VE2 A;  2EK4 A;  2EGS A;  3FFY A;  2EGB A;  2OWK A;  2OWF A;  3HH1 A;  2NPN A;  3NUT A;  3ND1 A;  2PB6 A;  2E15 A;  1WNG A;  3ZGL A;  2E4R A;  2E07 A;  3DNF A;  3SZO A;  2DSI A;  4MV0 A;  2P6L A;  3FQ6 A;  2DXV A;  2EJZ A;  1VHV A;  2HUV A;  2P2X A;  3F7T A;  2EJK A;  2EK3 A;  3KWP A;  3NDC A;  2DV5 A;  2YBO A;  1V9A A;  3URK A;  3UV6 A;  2E8H A;  2HUT A;  2DSH A;  2PCA A;  1S4D A;  3KE9 A;  3NEI A;  3UTC A;  2EL2 A;  4EB3 A;  2P6I A;  2E16 A;  2E8Q A;  1CBF A;  2OWG A;  2EL0 A;  2PCM A;  1WYZ A;  2ZVB A;  1PJT A;  3UWM A;  2EGL A;  3KE8 A;  2E08 A;  1VA0 A;  2EL1 A;  4MV5 A;  2ELE A;  1WDE A;  2ED5 A;  2HUX A;  2DXW A;  2EEQ A;  2ED3 A;  3SZU A;  2P6D A;  4E16 A;  2EJJ A;  1PJQ A;  2HR8 A;  2PCG A;  4MUY A;  2BB3 A;  2DSG A;  2EMR A;  2DXX A;  3ZGN A;  2P5C A;  4H4D A;  2DV7 A;  2EK2 A;  2HUQ A;  3UTD A;  2EMU A;  2PCK A;  3T0G A;  2CBF A;  3KEF A;  2KYY A;  2EN5 A;  1VCE A;  4H4E A;  4N7B A;  3UV3 A;  3SZL A;  2EHC A;  2EH2 A;  2ELD A;  2ZVC A;  3LMM A;  2PB4 A;  3T0F A;  2P5F A;  2OWV A;  2E0N A;  4H4C A;  2E17 A;  2EL3 A;  4MUX A;  2DV3 A;  2EH4 A;  2P6K A;  2DEK A;  3TIX B;  2E7R A;  3I4T A;  2DV4 A;  2E8R A;  2PB5 A;  2Z6R A;  2EK7 A;  3UV7 A;  2YBQ A;  2OWU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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