2EH2A

Mutant v18m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITMKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Mutant V18M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh2A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh2A01
2P6KA 2OWFA 2PCIA 2QBUA 2HUXA 2ENIA 1PJTA 2E16A 2NPNA 2DV4A 1S4DA 2E08A 3ND1A 2EK4A 2P5FA 3FFYA 2Z6RA 1VE2A 2EL1A 1PJSA 1VA0A 2ED5A 3HH1A 2DSIA 2EEQA 2EH2A 2ZVCA 2E8HA 2EH5A 2DSHA 2PCGA 2P9DA 2EL3A 2HUTA 2EK2A 2PCKA 5HW4A 2EK7A 2EN5A 2ED3A 1CBFA 2PB5A 2E8RA 2OWVA 2EGSA 1V9AA 2E4RA 2PCMA 3NDCA 2DSGA 2EGLA 3NUTA 2DV7A 1VHVA 2P5CA 2DV5A 2DEKA 2ELDA 2E07A 2OWGA 2E7RA 2EHCA 2PB6A 2P6DA 2E0KA 2P2XA 2EMRA 2OWKA 2PCHA 3FQ6A 2EHLA 1WDEA 2E0NA 2YBOA 3NEIA 3I4TA 1WNGA 2HUQA 2DXWA 1VCEA 2ELEA 2DV3A 2EK3A 2EGBA 2E17A 2E8QA 1PJQA 2EKAA 2E8SA 2EJZA 2HR8A 2E4NA 2CBFA 4E16A 2E15A 2PB4A 2EMUA 2EL2A 2HUVA 3KWPA 2YBQA 2ZVBA 1WYZA 2BB3A 2P6LA 2OWUA 2EJKA 2DXXA 2EL0A 2PCAA 2EH4A 2EJJA 2P6IA 2DXVA
chains in the Genus database with same CATH superfamily
2P6KA 2OWFA 2PCIA 2QBUA 2HUXA 2ENIA 1PJTA 2E16A 2NPNA 3KELA 4N7BA 3KEMA 2DV4A 1S4DA 2E08A 3ND1A 2EK4A 4H4EA 2P5FA 3FFYA 2Z6RA 1VE2A 2EL1A 1PJSA 1VA0A 2ED5A 3HH1A 2DSIA 2EEQA 2EH2A 2ZVCA 2E8HA 2EH5A 3ZGLA 2DSHA 4MUXA 2PCGA 3T0FA 2P9DA 2EL3A 2HUTA 2EK2A 4MV0A 3SZLA 2PCKA 3ZGNA 5HW4A 2EK7A 2EN5A 2ED3A 1CBFA 2PB5A 2E8RA 2OWVA 2EGSA 1V9AA 2E4RA 3KEFA 2PCMA 3NDCA 2DSGA 2EGLA 3NUTA 2DV7A 1VHVA 2P5CA 3F7TA 2DV5A 2DEKA 2ELDA 3DNFA 2E07A 3LMMA 2OWGA 2E7RA 2EHCA 2PB6A 2P6DA 2E0KA 4H4DA 2P2XA 3UV6A 2EMRA 2OWKA 2PCHA 3FQ6A 3T0GA 2EHLA 1WDEA 2E0NA 3URKA 2YBOA 3NEIA 3I4TA 1WNGA 2HUQA 3UV7A 2DXWA 1VCEA 2ELEA 2DV3A 2EK3A 2EGBA 2E17A 3SZOA 3UWMA 2E8QA 1PJQA 4H4CA 4MUYA 3TIXB 2EKAA 4EB3A 2E8SA 3KE9A 2EJZA 3UTDA 2HR8A 2E4NA 2CBFA 4E16A 2E15A 2PB4A 2EMUA 2EL2A 2HUVA 3KWPA 2YBQA 2KYYA 2ZVBA 3SZUA 3UV3A 1WYZA 2BB3A 2P6LA 2OWUA 4MV5A 2EJKA 2DXXA 2EL0A 2PCAA 3UTCA 2EH4A 2EJJA 2P6IA 3KE8A 2DXVA
chains in the Genus database with same CATH topology
2P6KA 2OWFA 2PCIA 2QBUA 2HUXA 2ENIA 1PJTA 2E16A 2NPNA 3KELA 4N7BA 3KEMA 2DV4A 1S4DA 2E08A 3ND1A 2EK4A 4H4EA 2P5FA 3FFYA 2Z6RA 1VE2A 2EL1A 1PJSA 1VA0A 2ED5A 3HH1A 2DSIA 2EEQA 2EH2A 2ZVCA 2E8HA 2EH5A 3ZGLA 2DSHA 4MUXA 2PCGA 3T0FA 2P9DA 2EL3A 2HUTA 2EK2A 4MV0A 3SZLA 2PCKA 3ZGNA 5HW4A 2EK7A 2EN5A 2ED3A 1CBFA 2PB5A 2E8RA 2OWVA 2EGSA 1V9AA 2E4RA 3KEFA 2PCMA 3NDCA 2DSGA 2EGLA 3NUTA 2DV7A 1VHVA 2P5CA 3F7TA 2DV5A 2DEKA 2ELDA 3DNFA 2E07A 3LMMA 2OWGA 2E7RA 2EHCA 2PB6A 2P6DA 2E0KA 4H4DA 2P2XA 3UV6A 2EMRA 2OWKA 2PCHA 3FQ6A 3T0GA 2EHLA 1WDEA 2E0NA 3URKA 2YBOA 3NEIA 3I4TA 1WNGA 2HUQA 3UV7A 2DXWA 1VCEA 2ELEA 2DV3A 2EK3A 2EGBA 2E17A 3SZOA 3UWMA 2E8QA 1PJQA 4H4CA 4MUYA 3TIXB 2EKAA 4EB3A 2E8SA 3KE9A 2EJZA 3UTDA 2HR8A 2E4NA 2CBFA 4E16A 2E15A 2PB4A 2EMUA 2EL2A 2HUVA 3KWPA 2YBQA 2KYYA 2ZVBA 3SZUA 3UV3A 1WYZA 2BB3A 2P6LA 2OWUA 4MV5A 2EJKA 2DXXA 2EL0A 2PCAA 3UTCA 2EH4A 2EJJA 2P6IA 3KE8A 2DXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6K A;  2OWF A;  2PCI A;  2QBU A;  2HUX A;  2ENI A;  1PJT A;  2E16 A;  2NPN A;  2DV4 A;  1S4D A;  2E08 A;  3ND1 A;  2EK4 A;  2P5F A;  3FFY A;  2Z6R A;  1VE2 A;  2EL1 A;  1PJS A;  1VA0 A;  2ED5 A;  3HH1 A;  2DSI A;  2EEQ A;  2EH2 A;  2ZVC A;  2E8H A;  2EH5 A;  2DSH A;  2PCG A;  2P9D A;  2EL3 A;  2HUT A;  2EK2 A;  2PCK A;  5HW4 A;  2EK7 A;  2EN5 A;  2ED3 A;  1CBF A;  2PB5 A;  2E8R A;  2OWV A;  2EGS A;  1V9A A;  2E4R A;  2PCM A;  3NDC A;  2DSG A;  2EGL A;  3NUT A;  2DV7 A;  1VHV A;  2P5C A;  2DV5 A;  2DEK A;  2ELD A;  2E07 A;  2OWG A;  2E7R A;  2EHC A;  2PB6 A;  2P6D A;  2E0K A;  2P2X A;  2EMR A;  2OWK A;  2PCH A;  3FQ6 A;  2EHL A;  1WDE A;  2E0N A;  2YBO A;  3NEI A;  3I4T A;  1WNG A;  2HUQ A;  2DXW A;  1VCE A;  2ELE A;  2DV3 A;  2EK3 A;  2EGB A;  2E17 A;  2E8Q A;  1PJQ A;  2EKA A;  2E8S A;  2EJZ A;  2HR8 A;  2E4N A;  2CBF A;  4E16 A;  2E15 A;  2PB4 A;  2EMU A;  2EL2 A;  2HUV A;  3KWP A;  2YBQ A;  2ZVB A;  1WYZ A;  2BB3 A;  2P6L A;  2OWU A;  2EJK A;  2DXX A;  2EL0 A;  2PCA A;  2EH4 A;  2EJJ A;  2P6I A;  2DXV A; 
#chains in the Genus database with same CATH topology
 2P6K A;  2OWF A;  2PCI A;  2QBU A;  2HUX A;  2ENI A;  1PJT A;  2E16 A;  2NPN A;  3KEL A;  4N7B A;  3KEM A;  2DV4 A;  1S4D A;  2E08 A;  3ND1 A;  2EK4 A;  4H4E A;  2P5F A;  3FFY A;  2Z6R A;  1VE2 A;  2EL1 A;  1PJS A;  1VA0 A;  2ED5 A;  3HH1 A;  2DSI A;  2EEQ A;  2EH2 A;  2ZVC A;  2E8H A;  2EH5 A;  3ZGL A;  2DSH A;  4MUX A;  2PCG A;  3T0F A;  2P9D A;  2EL3 A;  2HUT A;  2EK2 A;  4MV0 A;  3SZL A;  2PCK A;  3ZGN A;  5HW4 A;  2EK7 A;  2EN5 A;  2ED3 A;  1CBF A;  2PB5 A;  2E8R A;  2OWV A;  2EGS A;  1V9A A;  2E4R A;  3KEF A;  2PCM A;  3NDC A;  2DSG A;  2EGL A;  3NUT A;  2DV7 A;  1VHV A;  2P5C A;  3F7T A;  2DV5 A;  2DEK A;  2ELD A;  3DNF A;  2E07 A;  3LMM A;  2OWG A;  2E7R A;  2EHC A;  2PB6 A;  2P6D A;  2E0K A;  4H4D A;  2P2X A;  3UV6 A;  2EMR A;  2OWK A;  2PCH A;  3FQ6 A;  3T0G A;  2EHL A;  1WDE A;  2E0N A;  3URK A;  2YBO A;  3NEI A;  3I4T A;  1WNG A;  2HUQ A;  3UV7 A;  2DXW A;  1VCE A;  2ELE A;  2DV3 A;  2EK3 A;  2EGB A;  2E17 A;  3SZO A;  3UWM A;  2E8Q A;  1PJQ A;  4H4C A;  4MUY A;  3TIX B;  2EKA A;  4EB3 A;  2E8S A;  3KE9 A;  2EJZ A;  3UTD A;  2HR8 A;  2E4N A;  2CBF A;  4E16 A;  2E15 A;  2PB4 A;  2EMU A;  2EL2 A;  2HUV A;  3KWP A;  2YBQ A;  2KYY A;  2ZVB A;  3SZU A;  3UV3 A;  1WYZ A;  2BB3 A;  2P6L A;  2OWU A;  4MV5 A;  2EJK A;  2DXX A;  2EL0 A;  2PCA A;  3UTC A;  2EH4 A;  2EJJ A;  2P6I A;  3KE8 A;  2DXV A; 
#chains in the Genus database with same CATH homology
 2P6K A;  2OWF A;  2PCI A;  2QBU A;  2HUX A;  2ENI A;  1PJT A;  2E16 A;  2NPN A;  3KEL A;  4N7B A;  3KEM A;  2DV4 A;  1S4D A;  2E08 A;  3ND1 A;  2EK4 A;  4H4E A;  2P5F A;  3FFY A;  2Z6R A;  1VE2 A;  2EL1 A;  1PJS A;  1VA0 A;  2ED5 A;  3HH1 A;  2DSI A;  2EEQ A;  2EH2 A;  2ZVC A;  2E8H A;  2EH5 A;  3ZGL A;  2DSH A;  4MUX A;  2PCG A;  3T0F A;  2P9D A;  2EL3 A;  2HUT A;  2EK2 A;  4MV0 A;  3SZL A;  2PCK A;  3ZGN A;  5HW4 A;  2EK7 A;  2EN5 A;  2ED3 A;  1CBF A;  2PB5 A;  2E8R A;  2OWV A;  2EGS A;  1V9A A;  2E4R A;  3KEF A;  2PCM A;  3NDC A;  2DSG A;  2EGL A;  3NUT A;  2DV7 A;  1VHV A;  2P5C A;  3F7T A;  2DV5 A;  2DEK A;  2ELD A;  3DNF A;  2E07 A;  3LMM A;  2OWG A;  2E7R A;  2EHC A;  2PB6 A;  2P6D A;  2E0K A;  4H4D A;  2P2X A;  3UV6 A;  2EMR A;  2OWK A;  2PCH A;  3FQ6 A;  3T0G A;  2EHL A;  1WDE A;  2E0N A;  3URK A;  2YBO A;  3NEI A;  3I4T A;  1WNG A;  2HUQ A;  3UV7 A;  2DXW A;  1VCE A;  2ELE A;  2DV3 A;  2EK3 A;  2EGB A;  2E17 A;  3SZO A;  3UWM A;  2E8Q A;  1PJQ A;  4H4C A;  4MUY A;  3TIX B;  2EKA A;  4EB3 A;  2E8S A;  3KE9 A;  2EJZ A;  3UTD A;  2HR8 A;  2E4N A;  2CBF A;  4E16 A;  2E15 A;  2PB4 A;  2EMU A;  2EL2 A;  2HUV A;  3KWP A;  2YBQ A;  2KYY A;  2ZVB A;  3SZU A;  3UV3 A;  1WYZ A;  2BB3 A;  2P6L A;  2OWU A;  4MV5 A;  2EJK A;  2DXX A;  2EL0 A;  2PCA A;  3UTC A;  2EH4 A;  2EJJ A;  2P6I A;  3KE8 A;  2DXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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