2OWKA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGMHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owkA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owkA01
2HUXA 2BB3A 1PJQA 2EJJA 2EK7A 2CBFA 2E8QA 2P5FA 2E15A 2P2XA 5HW4A 1VE2A 2DSHA 2EGLA 2EJZA 2EGSA 1CBFA 2DXXA 3ND1A 2ZVBA 2P6LA 2YBOA 2P5CA 1PJTA 2EL2A 2P9DA 2EMUA 3HH1A 3I4TA 2EKAA 2DV3A 2E0NA 2HR8A 4E16A 2EK3A 2ED3A 2ENIA 2OWGA 2DV5A 2EL1A 2OWUA 2OWFA 2YBQA 2DXVA 2EMRA 2PCAA 2PB6A 2DSIA 2E16A 2NPNA 2PCKA 2E4NA 2E7RA 2ELEA 2EGBA 1V9AA 1WDEA 2E08A 2P6IA 3NUTA 2DXWA 2P6DA 2PCGA 3FFYA 2QBUA 2DV4A 2E8HA 2PB5A 1WYZA 1WNGA 2Z6RA 2P6KA 2OWKA 2EK4A 2E0KA 2E07A 1VHVA 2ZVCA 1S4DA 2ELDA 2EHCA 2HUTA 2E4RA 2PCIA 2ED5A 2EJKA 3NEIA 2PCHA 1PJSA 2EL0A 2EK2A 1VA0A 2EH2A 2HUQA 2OWVA 3KWPA 2DV7A 2DEKA 2EEQA 2E8RA 2EN5A 2EL3A 2EH4A 2DSGA 2PCMA 1VCEA 3NDCA 2EHLA 3FQ6A 2E17A 2E8SA 2EH5A 2HUVA 2PB4A
chains in the Genus database with same CATH superfamily
3UTDA 3KE8A 2HUXA 2BB3A 1PJQA 2EJJA 2EK7A 2CBFA 2E8QA 2P5FA 2E15A 2P2XA 5HW4A 3UV3A 1VE2A 2DSHA 2EGLA 4MV0A 2EJZA 2EGSA 3KEFA 1CBFA 2DXXA 3KELA 3URKA 3ND1A 3DNFA 2ZVBA 2P6LA 3TIXB 2YBOA 2P5CA 1PJTA 4MUXA 2EL2A 2P9DA 2EMUA 3HH1A 3I4TA 2EKAA 2DV3A 2E0NA 3UV6A 2HR8A 4E16A 2EK3A 3KE9A 2ED3A 4MUYA 2ENIA 2OWGA 2DV5A 2EL1A 2OWUA 2OWFA 2YBQA 2DXVA 2EMRA 2PCAA 2PB6A 2DSIA 2E16A 2NPNA 2PCKA 2E4NA 2E7RA 2ELEA 2EGBA 3SZOA 1V9AA 1WDEA 3T0FA 2E08A 4EB3A 4N7BA 2P6IA 3NUTA 2DXWA 2P6DA 2PCGA 3FFYA 3UTCA 2QBUA 3LMMA 2DV4A 2E8HA 2PB5A 1WYZA 1WNGA 2Z6RA 2P6KA 3UV7A 3ZGNA 2OWKA 3SZUA 3ZGLA 2EK4A 2E0KA 2E07A 1VHVA 2ZVCA 1S4DA 2ELDA 2EHCA 2HUTA 4H4CA 4H4DA 2E4RA 3SZLA 2PCIA 3T0GA 2ED5A 2EJKA 3NEIA 2PCHA 1PJSA 2EL0A 2EK2A 3UWMA 1VA0A 2EH2A 2HUQA 2OWVA 3KWPA 2DV7A 2DEKA 2EEQA 2E8RA 2EN5A 2EL3A 4H4EA 2EH4A 4MV5A 2DSGA 2PCMA 2KYYA 3F7TA 1VCEA 3NDCA 2EHLA 3FQ6A 2E17A 3KEMA 2E8SA 2EH5A 2HUVA 2PB4A
chains in the Genus database with same CATH topology
3UTDA 3KE8A 2HUXA 2BB3A 1PJQA 2EJJA 2EK7A 2CBFA 2E8QA 2P5FA 2E15A 2P2XA 5HW4A 3UV3A 1VE2A 2DSHA 2EGLA 4MV0A 2EJZA 2EGSA 3KEFA 1CBFA 2DXXA 3KELA 3URKA 3ND1A 3DNFA 2ZVBA 2P6LA 3TIXB 2YBOA 2P5CA 1PJTA 4MUXA 2EL2A 2P9DA 2EMUA 3HH1A 3I4TA 2EKAA 2DV3A 2E0NA 3UV6A 2HR8A 4E16A 2EK3A 3KE9A 2ED3A 4MUYA 2ENIA 2OWGA 2DV5A 2EL1A 2OWUA 2OWFA 2YBQA 2DXVA 2EMRA 2PCAA 2PB6A 2DSIA 2E16A 2NPNA 2PCKA 2E4NA 2E7RA 2ELEA 2EGBA 3SZOA 1V9AA 1WDEA 3T0FA 2E08A 4EB3A 4N7BA 2P6IA 3NUTA 2DXWA 2P6DA 2PCGA 3FFYA 3UTCA 2QBUA 3LMMA 2DV4A 2E8HA 2PB5A 1WYZA 1WNGA 2Z6RA 2P6KA 3UV7A 3ZGNA 2OWKA 3SZUA 3ZGLA 2EK4A 2E0KA 2E07A 1VHVA 2ZVCA 1S4DA 2ELDA 2EHCA 2HUTA 4H4CA 4H4DA 2E4RA 3SZLA 2PCIA 3T0GA 2ED5A 2EJKA 3NEIA 2PCHA 1PJSA 2EL0A 2EK2A 3UWMA 1VA0A 2EH2A 2HUQA 2OWVA 3KWPA 2DV7A 2DEKA 2EEQA 2E8RA 2EN5A 2EL3A 4H4EA 2EH4A 4MV5A 2DSGA 2PCMA 2KYYA 3F7TA 1VCEA 3NDCA 2EHLA 3FQ6A 2E17A 3KEMA 2E8SA 2EH5A 2HUVA 2PB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HUX A;  2BB3 A;  1PJQ A;  2EJJ A;  2EK7 A;  2CBF A;  2E8Q A;  2P5F A;  2E15 A;  2P2X A;  5HW4 A;  1VE2 A;  2DSH A;  2EGL A;  2EJZ A;  2EGS A;  1CBF A;  2DXX A;  3ND1 A;  2ZVB A;  2P6L A;  2YBO A;  2P5C A;  1PJT A;  2EL2 A;  2P9D A;  2EMU A;  3HH1 A;  3I4T A;  2EKA A;  2DV3 A;  2E0N A;  2HR8 A;  4E16 A;  2EK3 A;  2ED3 A;  2ENI A;  2OWG A;  2DV5 A;  2EL1 A;  2OWU A;  2OWF A;  2YBQ A;  2DXV A;  2EMR A;  2PCA A;  2PB6 A;  2DSI A;  2E16 A;  2NPN A;  2PCK A;  2E4N A;  2E7R A;  2ELE A;  2EGB A;  1V9A A;  1WDE A;  2E08 A;  2P6I A;  3NUT A;  2DXW A;  2P6D A;  2PCG A;  3FFY A;  2QBU A;  2DV4 A;  2E8H A;  2PB5 A;  1WYZ A;  1WNG A;  2Z6R A;  2P6K A;  2OWK A;  2EK4 A;  2E0K A;  2E07 A;  1VHV A;  2ZVC A;  1S4D A;  2ELD A;  2EHC A;  2HUT A;  2E4R A;  2PCI A;  2ED5 A;  2EJK A;  3NEI A;  2PCH A;  1PJS A;  2EL0 A;  2EK2 A;  1VA0 A;  2EH2 A;  2HUQ A;  2OWV A;  3KWP A;  2DV7 A;  2DEK A;  2EEQ A;  2E8R A;  2EN5 A;  2EL3 A;  2EH4 A;  2DSG A;  2PCM A;  1VCE A;  3NDC A;  2EHL A;  3FQ6 A;  2E17 A;  2E8S A;  2EH5 A;  2HUV A;  2PB4 A; 
#chains in the Genus database with same CATH topology
 3UTD A;  3KE8 A;  2HUX A;  2BB3 A;  1PJQ A;  2EJJ A;  2EK7 A;  2CBF A;  2E8Q A;  2P5F A;  2E15 A;  2P2X A;  5HW4 A;  3UV3 A;  1VE2 A;  2DSH A;  2EGL A;  4MV0 A;  2EJZ A;  2EGS A;  3KEF A;  1CBF A;  2DXX A;  3KEL A;  3URK A;  3ND1 A;  3DNF A;  2ZVB A;  2P6L A;  3TIX B;  2YBO A;  2P5C A;  1PJT A;  4MUX A;  2EL2 A;  2P9D A;  2EMU A;  3HH1 A;  3I4T A;  2EKA A;  2DV3 A;  2E0N A;  3UV6 A;  2HR8 A;  4E16 A;  2EK3 A;  3KE9 A;  2ED3 A;  4MUY A;  2ENI A;  2OWG A;  2DV5 A;  2EL1 A;  2OWU A;  2OWF A;  2YBQ A;  2DXV A;  2EMR A;  2PCA A;  2PB6 A;  2DSI A;  2E16 A;  2NPN A;  2PCK A;  2E4N A;  2E7R A;  2ELE A;  2EGB A;  3SZO A;  1V9A A;  1WDE A;  3T0F A;  2E08 A;  4EB3 A;  4N7B A;  2P6I A;  3NUT A;  2DXW A;  2P6D A;  2PCG A;  3FFY A;  3UTC A;  2QBU A;  3LMM A;  2DV4 A;  2E8H A;  2PB5 A;  1WYZ A;  1WNG A;  2Z6R A;  2P6K A;  3UV7 A;  3ZGN A;  2OWK A;  3SZU A;  3ZGL A;  2EK4 A;  2E0K A;  2E07 A;  1VHV A;  2ZVC A;  1S4D A;  2ELD A;  2EHC A;  2HUT A;  4H4C A;  4H4D A;  2E4R A;  3SZL A;  2PCI A;  3T0G A;  2ED5 A;  2EJK A;  3NEI A;  2PCH A;  1PJS A;  2EL0 A;  2EK2 A;  3UWM A;  1VA0 A;  2EH2 A;  2HUQ A;  2OWV A;  3KWP A;  2DV7 A;  2DEK A;  2EEQ A;  2E8R A;  2EN5 A;  2EL3 A;  4H4E A;  2EH4 A;  4MV5 A;  2DSG A;  2PCM A;  2KYY A;  3F7T A;  1VCE A;  3NDC A;  2EHL A;  3FQ6 A;  2E17 A;  3KEM A;  2E8S A;  2EH5 A;  2HUV A;  2PB4 A; 
#chains in the Genus database with same CATH homology
 3UTD A;  3KE8 A;  2HUX A;  2BB3 A;  1PJQ A;  2EJJ A;  2EK7 A;  2CBF A;  2E8Q A;  2P5F A;  2E15 A;  2P2X A;  5HW4 A;  3UV3 A;  1VE2 A;  2DSH A;  2EGL A;  4MV0 A;  2EJZ A;  2EGS A;  3KEF A;  1CBF A;  2DXX A;  3KEL A;  3URK A;  3ND1 A;  3DNF A;  2ZVB A;  2P6L A;  3TIX B;  2YBO A;  2P5C A;  1PJT A;  4MUX A;  2EL2 A;  2P9D A;  2EMU A;  3HH1 A;  3I4T A;  2EKA A;  2DV3 A;  2E0N A;  3UV6 A;  2HR8 A;  4E16 A;  2EK3 A;  3KE9 A;  2ED3 A;  4MUY A;  2ENI A;  2OWG A;  2DV5 A;  2EL1 A;  2OWU A;  2OWF A;  2YBQ A;  2DXV A;  2EMR A;  2PCA A;  2PB6 A;  2DSI A;  2E16 A;  2NPN A;  2PCK A;  2E4N A;  2E7R A;  2ELE A;  2EGB A;  3SZO A;  1V9A A;  1WDE A;  3T0F A;  2E08 A;  4EB3 A;  4N7B A;  2P6I A;  3NUT A;  2DXW A;  2P6D A;  2PCG A;  3FFY A;  3UTC A;  2QBU A;  3LMM A;  2DV4 A;  2E8H A;  2PB5 A;  1WYZ A;  1WNG A;  2Z6R A;  2P6K A;  3UV7 A;  3ZGN A;  2OWK A;  3SZU A;  3ZGL A;  2EK4 A;  2E0K A;  2E07 A;  1VHV A;  2ZVC A;  1S4D A;  2ELD A;  2EHC A;  2HUT A;  4H4C A;  4H4D A;  2E4R A;  3SZL A;  2PCI A;  3T0G A;  2ED5 A;  2EJK A;  3NEI A;  2PCH A;  1PJS A;  2EL0 A;  2EK2 A;  3UWM A;  1VA0 A;  2EH2 A;  2HUQ A;  2OWV A;  3KWP A;  2DV7 A;  2DEK A;  2EEQ A;  2E8R A;  2EN5 A;  2EL3 A;  4H4E A;  2EH4 A;  4MV5 A;  2DSG A;  2PCM A;  2KYY A;  3F7T A;  1VCE A;  3NDC A;  2EHL A;  3FQ6 A;  2E17 A;  3KEM A;  2E8S A;  2EH5 A;  2HUV A;  2PB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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