2EJZA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (y11m)
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLMDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (Y11M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 78
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ejzA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ejzA01
2OWUA 2YBOA 2HR8A 1PJQA 2PB5A 2DSGA 2EHCA 2PB4A 2E0KA 2ELDA 2CBFA 2E17A 2E4NA 3KWPA 1PJSA 2E7RA 2OWVA 2HUVA 2PCMA 1CBFA 2YBQA 2EJZA 4E16A 2EH4A 2EL1A 2E4RA 2BB3A 2EMRA 5HW4A 2PCHA 3FFYA 2HUXA 1PJTA 2OWFA 2E15A 2EKAA 2DV7A 2PCIA 2EK7A 2E16A 3FQ6A 2P5FA 2E8SA 1S4DA 2EK3A 2EGBA 2ED5A 2EL3A 3I4TA 2EEQA 3NEIA 2P2XA 3NDCA 2DV5A 2EH2A 2NPNA 2EGSA 2ZVCA 2PB6A 2P6IA 2EL0A 2HUTA 1VHVA 2E07A 2EJKA 2OWGA 2DSHA 2E0NA 2HUQA 2PCAA 1VA0A 2ED3A 1WNGA 2EK4A 2DXXA 2EHLA 2P9DA 1WDEA 2E08A 2DV4A 2PCKA 2EL2A 1VCEA 2OWKA 2P6KA 3NUTA 2Z6RA 2ELEA 2QBUA 2EMUA 2EH5A 2ENIA 2E8RA 2EK2A 1V9AA 3ND1A 2DSIA 2P6DA 2ZVBA 2EJJA 2EGLA 2P6LA 2E8QA 2DEKA 2E8HA 2DXVA 1WYZA 2PCGA 3HH1A 1VE2A 2DXWA 2DV3A 2EN5A 2P5CA
chains in the Genus database with same CATH superfamily
2OWUA 2YBOA 2HR8A 1PJQA 2PB5A 2DSGA 2EHCA 2PB4A 2E0KA 2ELDA 2CBFA 3SZOA 2E17A 3SZLA 2E4NA 4MV5A 3KWPA 1PJSA 2E7RA 2OWVA 2HUVA 4H4CA 3ZGLA 2PCMA 1CBFA 3LMMA 3T0FA 2YBQA 2EJZA 3UV7A 4E16A 2EH4A 2EL1A 2E4RA 4H4DA 2BB3A 2EMRA 5HW4A 2PCHA 3TIXB 3FFYA 2HUXA 1PJTA 2OWFA 3KEMA 2E15A 3UWMA 2EKAA 2DV7A 2PCIA 2EK7A 2E16A 3KE8A 3FQ6A 2P5FA 3UV6A 2KYYA 4MUXA 2E8SA 1S4DA 3ZGNA 2EK3A 2EGBA 2ED5A 2EL3A 3I4TA 2EEQA 3NEIA 2P2XA 4MUYA 3UV3A 3NDCA 2DV5A 2EH2A 2NPNA 2EGSA 2ZVCA 2PB6A 2P6IA 2EL0A 3KE9A 2HUTA 1VHVA 2E07A 2EJKA 2OWGA 2DSHA 2E0NA 3UTDA 2HUQA 2PCAA 3F7TA 1VA0A 4MV0A 2ED3A 3SZUA 3UTCA 1WNGA 2EK4A 2DXXA 2EHLA 2P9DA 3DNFA 1WDEA 2E08A 2DV4A 2PCKA 2EL2A 1VCEA 2OWKA 3KELA 2P6KA 3NUTA 2Z6RA 2ELEA 2QBUA 2EMUA 2EH5A 2ENIA 2E8RA 2EK2A 1V9AA 4EB3A 3ND1A 2DSIA 3T0GA 2P6DA 2ZVBA 2EJJA 2EGLA 2P6LA 2E8QA 4N7BA 2DEKA 2E8HA 2DXVA 1WYZA 2PCGA 3HH1A 1VE2A 2DXWA 4H4EA 2DV3A 2EN5A 3URKA 3KEFA 2P5CA
chains in the Genus database with same CATH topology
2OWUA 2YBOA 2HR8A 1PJQA 2PB5A 2DSGA 2EHCA 2PB4A 2E0KA 2ELDA 2CBFA 3SZOA 2E17A 3SZLA 2E4NA 4MV5A 3KWPA 1PJSA 2E7RA 2OWVA 2HUVA 4H4CA 3ZGLA 2PCMA 1CBFA 3LMMA 3T0FA 2YBQA 2EJZA 3UV7A 4E16A 2EH4A 2EL1A 2E4RA 4H4DA 2BB3A 2EMRA 5HW4A 2PCHA 3TIXB 3FFYA 2HUXA 1PJTA 2OWFA 3KEMA 2E15A 3UWMA 2EKAA 2DV7A 2PCIA 2EK7A 2E16A 3KE8A 3FQ6A 2P5FA 3UV6A 2KYYA 4MUXA 2E8SA 1S4DA 3ZGNA 2EK3A 2EGBA 2ED5A 2EL3A 3I4TA 2EEQA 3NEIA 2P2XA 4MUYA 3UV3A 3NDCA 2DV5A 2EH2A 2NPNA 2EGSA 2ZVCA 2PB6A 2P6IA 2EL0A 3KE9A 2HUTA 1VHVA 2E07A 2EJKA 2OWGA 2DSHA 2E0NA 3UTDA 2HUQA 2PCAA 3F7TA 1VA0A 4MV0A 2ED3A 3SZUA 3UTCA 1WNGA 2EK4A 2DXXA 2EHLA 2P9DA 3DNFA 1WDEA 2E08A 2DV4A 2PCKA 2EL2A 1VCEA 2OWKA 3KELA 2P6KA 3NUTA 2Z6RA 2ELEA 2QBUA 2EMUA 2EH5A 2ENIA 2E8RA 2EK2A 1V9AA 4EB3A 3ND1A 2DSIA 3T0GA 2P6DA 2ZVBA 2EJJA 2EGLA 2P6LA 2E8QA 4N7BA 2DEKA 2E8HA 2DXVA 1WYZA 2PCGA 3HH1A 1VE2A 2DXWA 4H4EA 2DV3A 2EN5A 3URKA 3KEFA 2P5CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWU A;  2YBO A;  2HR8 A;  1PJQ A;  2PB5 A;  2DSG A;  2EHC A;  2PB4 A;  2E0K A;  2ELD A;  2CBF A;  2E17 A;  2E4N A;  3KWP A;  1PJS A;  2E7R A;  2OWV A;  2HUV A;  2PCM A;  1CBF A;  2YBQ A;  2EJZ A;  4E16 A;  2EH4 A;  2EL1 A;  2E4R A;  2BB3 A;  2EMR A;  5HW4 A;  2PCH A;  3FFY A;  2HUX A;  1PJT A;  2OWF A;  2E15 A;  2EKA A;  2DV7 A;  2PCI A;  2EK7 A;  2E16 A;  3FQ6 A;  2P5F A;  2E8S A;  1S4D A;  2EK3 A;  2EGB A;  2ED5 A;  2EL3 A;  3I4T A;  2EEQ A;  3NEI A;  2P2X A;  3NDC A;  2DV5 A;  2EH2 A;  2NPN A;  2EGS A;  2ZVC A;  2PB6 A;  2P6I A;  2EL0 A;  2HUT A;  1VHV A;  2E07 A;  2EJK A;  2OWG A;  2DSH A;  2E0N A;  2HUQ A;  2PCA A;  1VA0 A;  2ED3 A;  1WNG A;  2EK4 A;  2DXX A;  2EHL A;  2P9D A;  1WDE A;  2E08 A;  2DV4 A;  2PCK A;  2EL2 A;  1VCE A;  2OWK A;  2P6K A;  3NUT A;  2Z6R A;  2ELE A;  2QBU A;  2EMU A;  2EH5 A;  2ENI A;  2E8R A;  2EK2 A;  1V9A A;  3ND1 A;  2DSI A;  2P6D A;  2ZVB A;  2EJJ A;  2EGL A;  2P6L A;  2E8Q A;  2DEK A;  2E8H A;  2DXV A;  1WYZ A;  2PCG A;  3HH1 A;  1VE2 A;  2DXW A;  2DV3 A;  2EN5 A;  2P5C A; 
#chains in the Genus database with same CATH topology
 2OWU A;  2YBO A;  2HR8 A;  1PJQ A;  2PB5 A;  2DSG A;  2EHC A;  2PB4 A;  2E0K A;  2ELD A;  2CBF A;  3SZO A;  2E17 A;  3SZL A;  2E4N A;  4MV5 A;  3KWP A;  1PJS A;  2E7R A;  2OWV A;  2HUV A;  4H4C A;  3ZGL A;  2PCM A;  1CBF A;  3LMM A;  3T0F A;  2YBQ A;  2EJZ A;  3UV7 A;  4E16 A;  2EH4 A;  2EL1 A;  2E4R A;  4H4D A;  2BB3 A;  2EMR A;  5HW4 A;  2PCH A;  3TIX B;  3FFY A;  2HUX A;  1PJT A;  2OWF A;  3KEM A;  2E15 A;  3UWM A;  2EKA A;  2DV7 A;  2PCI A;  2EK7 A;  2E16 A;  3KE8 A;  3FQ6 A;  2P5F A;  3UV6 A;  2KYY A;  4MUX A;  2E8S A;  1S4D A;  3ZGN A;  2EK3 A;  2EGB A;  2ED5 A;  2EL3 A;  3I4T A;  2EEQ A;  3NEI A;  2P2X A;  4MUY A;  3UV3 A;  3NDC A;  2DV5 A;  2EH2 A;  2NPN A;  2EGS A;  2ZVC A;  2PB6 A;  2P6I A;  2EL0 A;  3KE9 A;  2HUT A;  1VHV A;  2E07 A;  2EJK A;  2OWG A;  2DSH A;  2E0N A;  3UTD A;  2HUQ A;  2PCA A;  3F7T A;  1VA0 A;  4MV0 A;  2ED3 A;  3SZU A;  3UTC A;  1WNG A;  2EK4 A;  2DXX A;  2EHL A;  2P9D A;  3DNF A;  1WDE A;  2E08 A;  2DV4 A;  2PCK A;  2EL2 A;  1VCE A;  2OWK A;  3KEL A;  2P6K A;  3NUT A;  2Z6R A;  2ELE A;  2QBU A;  2EMU A;  2EH5 A;  2ENI A;  2E8R A;  2EK2 A;  1V9A A;  4EB3 A;  3ND1 A;  2DSI A;  3T0G A;  2P6D A;  2ZVB A;  2EJJ A;  2EGL A;  2P6L A;  2E8Q A;  4N7B A;  2DEK A;  2E8H A;  2DXV A;  1WYZ A;  2PCG A;  3HH1 A;  1VE2 A;  2DXW A;  4H4E A;  2DV3 A;  2EN5 A;  3URK A;  3KEF A;  2P5C A; 
#chains in the Genus database with same CATH homology
 2OWU A;  2YBO A;  2HR8 A;  1PJQ A;  2PB5 A;  2DSG A;  2EHC A;  2PB4 A;  2E0K A;  2ELD A;  2CBF A;  3SZO A;  2E17 A;  3SZL A;  2E4N A;  4MV5 A;  3KWP A;  1PJS A;  2E7R A;  2OWV A;  2HUV A;  4H4C A;  3ZGL A;  2PCM A;  1CBF A;  3LMM A;  3T0F A;  2YBQ A;  2EJZ A;  3UV7 A;  4E16 A;  2EH4 A;  2EL1 A;  2E4R A;  4H4D A;  2BB3 A;  2EMR A;  5HW4 A;  2PCH A;  3TIX B;  3FFY A;  2HUX A;  1PJT A;  2OWF A;  3KEM A;  2E15 A;  3UWM A;  2EKA A;  2DV7 A;  2PCI A;  2EK7 A;  2E16 A;  3KE8 A;  3FQ6 A;  2P5F A;  3UV6 A;  2KYY A;  4MUX A;  2E8S A;  1S4D A;  3ZGN A;  2EK3 A;  2EGB A;  2ED5 A;  2EL3 A;  3I4T A;  2EEQ A;  3NEI A;  2P2X A;  4MUY A;  3UV3 A;  3NDC A;  2DV5 A;  2EH2 A;  2NPN A;  2EGS A;  2ZVC A;  2PB6 A;  2P6I A;  2EL0 A;  3KE9 A;  2HUT A;  1VHV A;  2E07 A;  2EJK A;  2OWG A;  2DSH A;  2E0N A;  3UTD A;  2HUQ A;  2PCA A;  3F7T A;  1VA0 A;  4MV0 A;  2ED3 A;  3SZU A;  3UTC A;  1WNG A;  2EK4 A;  2DXX A;  2EHL A;  2P9D A;  3DNF A;  1WDE A;  2E08 A;  2DV4 A;  2PCK A;  2EL2 A;  1VCE A;  2OWK A;  3KEL A;  2P6K A;  3NUT A;  2Z6R A;  2ELE A;  2QBU A;  2EMU A;  2EH5 A;  2ENI A;  2E8R A;  2EK2 A;  1V9A A;  4EB3 A;  3ND1 A;  2DSI A;  3T0G A;  2P6D A;  2ZVB A;  2EJJ A;  2EGL A;  2P6L A;  2E8Q A;  4N7B A;  2DEK A;  2E8H A;  2DXV A;  1WYZ A;  2PCG A;  3HH1 A;  1VE2 A;  2DXW A;  4H4E A;  2DV3 A;  2EN5 A;  3URK A;  3KEF A;  2P5C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...