2EJZA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (y11m)
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLMDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (Y11M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 78
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ejzA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ejzA01
2HUVA 2HR8A 2E17A 1WDEA 1WNGA 3NEIA 2PCIA 2EL0A 2P6LA 2OWGA 2NPNA 3NUTA 2PCKA 2Z6RA 2E07A 2EK7A 2DV5A 2EH4A 4E16A 2ZVBA 2EL3A 2OWVA 1PJSA 2CBFA 2DV4A 2E8QA 2EGBA 2HUQA 2P9DA 2QBUA 2EJZA 2DXXA 2OWUA 3NDCA 2EL2A 2P6KA 1WYZA 2ELDA 2PCGA 1PJTA 2EKAA 2E4NA 2EH2A 2EK3A 2BB3A 3FFYA 1PJQA 2PCMA 2EHLA 2E0KA 2EGLA 2P6DA 2ED5A 2P6IA 2E8HA 2EK4A 2PB4A 2PB6A 2DV3A 2P5CA 2P5FA 2E15A 2PCAA 3I4TA 2DEKA 2OWFA 2E4RA 2E7RA 3KWPA 2YBOA 2ZVCA 2HUXA 2OWKA 2DXVA 2EN5A 2EGSA 2ELEA 2EL1A 2E8RA 2ED3A 2DSHA 2EHCA 2DXWA 2EJKA 2PCHA 5HW4A 3HH1A 1VE2A 1CBFA 1V9AA 2DSIA 2EJJA 2E0NA 1S4DA 2EMUA 2ENIA 3FQ6A 2E08A 2DSGA 2EMRA 2HUTA 2EEQA 2PB5A 1VCEA 2EH5A 1VA0A 2E8SA 2E16A 2EK2A 2YBQA 2P2XA 2DV7A 3ND1A 1VHVA
chains in the Genus database with same CATH superfamily
3SZLA 2HUVA 2HR8A 2E17A 1WDEA 1WNGA 4H4CA 3NEIA 2PCIA 2EL0A 3T0FA 2P6LA 3KE9A 2OWGA 2NPNA 3NUTA 4H4EA 2PCKA 2Z6RA 2E07A 2EK7A 2DV5A 2EH4A 4E16A 4MV5A 2ZVBA 2EL3A 3UV3A 2OWVA 1PJSA 2CBFA 2DV4A 3SZOA 2E8QA 2EGBA 2HUQA 2P9DA 4MUYA 2QBUA 2EJZA 2DXXA 2OWUA 3NDCA 2EL2A 2KYYA 2P6KA 1WYZA 2ELDA 2PCGA 3T0GA 3UWMA 1PJTA 2EKAA 2E4NA 3UV6A 2EH2A 2EK3A 2BB3A 3FFYA 3URKA 1PJQA 2PCMA 3SZUA 2EHLA 2E0KA 2EGLA 2P6DA 3F7TA 4MV0A 2ED5A 2P6IA 2E8HA 3ZGNA 2EK4A 2PB4A 2PB6A 2DV3A 3LMMA 2P5CA 2P5FA 2E15A 2PCAA 4N7BA 3I4TA 2DEKA 2OWFA 3ZGLA 2E4RA 2E7RA 3KWPA 2YBOA 2ZVCA 2HUXA 2OWKA 2DXVA 4MUXA 2EN5A 2EGSA 2ELEA 2EL1A 2E8RA 2ED3A 3KEMA 4H4DA 2DSHA 2EHCA 2DXWA 2EJKA 2PCHA 5HW4A 3DNFA 3HH1A 3UV7A 1VE2A 1CBFA 1V9AA 2DSIA 2EJJA 2E0NA 1S4DA 2EMUA 2ENIA 3FQ6A 2E08A 2DSGA 2EMRA 2HUTA 2EEQA 2PB5A 1VCEA 2EH5A 3UTCA 3KE8A 1VA0A 2E8SA 2E16A 2EK2A 3TIXB 2YBQA 3KELA 2P2XA 3KEFA 3UTDA 2DV7A 4EB3A 3ND1A 1VHVA
chains in the Genus database with same CATH topology
3SZLA 2HUVA 2HR8A 2E17A 1WDEA 1WNGA 4H4CA 3NEIA 2PCIA 2EL0A 3T0FA 2P6LA 3KE9A 2OWGA 2NPNA 3NUTA 4H4EA 2PCKA 2Z6RA 2E07A 2EK7A 2DV5A 2EH4A 4E16A 4MV5A 2ZVBA 2EL3A 3UV3A 2OWVA 1PJSA 2CBFA 2DV4A 3SZOA 2E8QA 2EGBA 2HUQA 2P9DA 4MUYA 2QBUA 2EJZA 2DXXA 2OWUA 3NDCA 2EL2A 2KYYA 2P6KA 1WYZA 2ELDA 2PCGA 3T0GA 3UWMA 1PJTA 2EKAA 2E4NA 3UV6A 2EH2A 2EK3A 2BB3A 3FFYA 3URKA 1PJQA 2PCMA 3SZUA 2EHLA 2E0KA 2EGLA 2P6DA 3F7TA 4MV0A 2ED5A 2P6IA 2E8HA 3ZGNA 2EK4A 2PB4A 2PB6A 2DV3A 3LMMA 2P5CA 2P5FA 2E15A 2PCAA 4N7BA 3I4TA 2DEKA 2OWFA 3ZGLA 2E4RA 2E7RA 3KWPA 2YBOA 2ZVCA 2HUXA 2OWKA 2DXVA 4MUXA 2EN5A 2EGSA 2ELEA 2EL1A 2E8RA 2ED3A 3KEMA 4H4DA 2DSHA 2EHCA 2DXWA 2EJKA 2PCHA 5HW4A 3DNFA 3HH1A 3UV7A 1VE2A 1CBFA 1V9AA 2DSIA 2EJJA 2E0NA 1S4DA 2EMUA 2ENIA 3FQ6A 2E08A 2DSGA 2EMRA 2HUTA 2EEQA 2PB5A 1VCEA 2EH5A 3UTCA 3KE8A 1VA0A 2E8SA 2E16A 2EK2A 3TIXB 2YBQA 3KELA 2P2XA 3KEFA 3UTDA 2DV7A 4EB3A 3ND1A 1VHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HUV A;  2HR8 A;  2E17 A;  1WDE A;  1WNG A;  3NEI A;  2PCI A;  2EL0 A;  2P6L A;  2OWG A;  2NPN A;  3NUT A;  2PCK A;  2Z6R A;  2E07 A;  2EK7 A;  2DV5 A;  2EH4 A;  4E16 A;  2ZVB A;  2EL3 A;  2OWV A;  1PJS A;  2CBF A;  2DV4 A;  2E8Q A;  2EGB A;  2HUQ A;  2P9D A;  2QBU A;  2EJZ A;  2DXX A;  2OWU A;  3NDC A;  2EL2 A;  2P6K A;  1WYZ A;  2ELD A;  2PCG A;  1PJT A;  2EKA A;  2E4N A;  2EH2 A;  2EK3 A;  2BB3 A;  3FFY A;  1PJQ A;  2PCM A;  2EHL A;  2E0K A;  2EGL A;  2P6D A;  2ED5 A;  2P6I A;  2E8H A;  2EK4 A;  2PB4 A;  2PB6 A;  2DV3 A;  2P5C A;  2P5F A;  2E15 A;  2PCA A;  3I4T A;  2DEK A;  2OWF A;  2E4R A;  2E7R A;  3KWP A;  2YBO A;  2ZVC A;  2HUX A;  2OWK A;  2DXV A;  2EN5 A;  2EGS A;  2ELE A;  2EL1 A;  2E8R A;  2ED3 A;  2DSH A;  2EHC A;  2DXW A;  2EJK A;  2PCH A;  5HW4 A;  3HH1 A;  1VE2 A;  1CBF A;  1V9A A;  2DSI A;  2EJJ A;  2E0N A;  1S4D A;  2EMU A;  2ENI A;  3FQ6 A;  2E08 A;  2DSG A;  2EMR A;  2HUT A;  2EEQ A;  2PB5 A;  1VCE A;  2EH5 A;  1VA0 A;  2E8S A;  2E16 A;  2EK2 A;  2YBQ A;  2P2X A;  2DV7 A;  3ND1 A;  1VHV A; 
#chains in the Genus database with same CATH topology
 3SZL A;  2HUV A;  2HR8 A;  2E17 A;  1WDE A;  1WNG A;  4H4C A;  3NEI A;  2PCI A;  2EL0 A;  3T0F A;  2P6L A;  3KE9 A;  2OWG A;  2NPN A;  3NUT A;  4H4E A;  2PCK A;  2Z6R A;  2E07 A;  2EK7 A;  2DV5 A;  2EH4 A;  4E16 A;  4MV5 A;  2ZVB A;  2EL3 A;  3UV3 A;  2OWV A;  1PJS A;  2CBF A;  2DV4 A;  3SZO A;  2E8Q A;  2EGB A;  2HUQ A;  2P9D A;  4MUY A;  2QBU A;  2EJZ A;  2DXX A;  2OWU A;  3NDC A;  2EL2 A;  2KYY A;  2P6K A;  1WYZ A;  2ELD A;  2PCG A;  3T0G A;  3UWM A;  1PJT A;  2EKA A;  2E4N A;  3UV6 A;  2EH2 A;  2EK3 A;  2BB3 A;  3FFY A;  3URK A;  1PJQ A;  2PCM A;  3SZU A;  2EHL A;  2E0K A;  2EGL A;  2P6D A;  3F7T A;  4MV0 A;  2ED5 A;  2P6I A;  2E8H A;  3ZGN A;  2EK4 A;  2PB4 A;  2PB6 A;  2DV3 A;  3LMM A;  2P5C A;  2P5F A;  2E15 A;  2PCA A;  4N7B A;  3I4T A;  2DEK A;  2OWF A;  3ZGL A;  2E4R A;  2E7R A;  3KWP A;  2YBO A;  2ZVC A;  2HUX A;  2OWK A;  2DXV A;  4MUX A;  2EN5 A;  2EGS A;  2ELE A;  2EL1 A;  2E8R A;  2ED3 A;  3KEM A;  4H4D A;  2DSH A;  2EHC A;  2DXW A;  2EJK A;  2PCH A;  5HW4 A;  3DNF A;  3HH1 A;  3UV7 A;  1VE2 A;  1CBF A;  1V9A A;  2DSI A;  2EJJ A;  2E0N A;  1S4D A;  2EMU A;  2ENI A;  3FQ6 A;  2E08 A;  2DSG A;  2EMR A;  2HUT A;  2EEQ A;  2PB5 A;  1VCE A;  2EH5 A;  3UTC A;  3KE8 A;  1VA0 A;  2E8S A;  2E16 A;  2EK2 A;  3TIX B;  2YBQ A;  3KEL A;  2P2X A;  3KEF A;  3UTD A;  2DV7 A;  4EB3 A;  3ND1 A;  1VHV A; 
#chains in the Genus database with same CATH homology
 3SZL A;  2HUV A;  2HR8 A;  2E17 A;  1WDE A;  1WNG A;  4H4C A;  3NEI A;  2PCI A;  2EL0 A;  3T0F A;  2P6L A;  3KE9 A;  2OWG A;  2NPN A;  3NUT A;  4H4E A;  2PCK A;  2Z6R A;  2E07 A;  2EK7 A;  2DV5 A;  2EH4 A;  4E16 A;  4MV5 A;  2ZVB A;  2EL3 A;  3UV3 A;  2OWV A;  1PJS A;  2CBF A;  2DV4 A;  3SZO A;  2E8Q A;  2EGB A;  2HUQ A;  2P9D A;  4MUY A;  2QBU A;  2EJZ A;  2DXX A;  2OWU A;  3NDC A;  2EL2 A;  2KYY A;  2P6K A;  1WYZ A;  2ELD A;  2PCG A;  3T0G A;  3UWM A;  1PJT A;  2EKA A;  2E4N A;  3UV6 A;  2EH2 A;  2EK3 A;  2BB3 A;  3FFY A;  3URK A;  1PJQ A;  2PCM A;  3SZU A;  2EHL A;  2E0K A;  2EGL A;  2P6D A;  3F7T A;  4MV0 A;  2ED5 A;  2P6I A;  2E8H A;  3ZGN A;  2EK4 A;  2PB4 A;  2PB6 A;  2DV3 A;  3LMM A;  2P5C A;  2P5F A;  2E15 A;  2PCA A;  4N7B A;  3I4T A;  2DEK A;  2OWF A;  3ZGL A;  2E4R A;  2E7R A;  3KWP A;  2YBO A;  2ZVC A;  2HUX A;  2OWK A;  2DXV A;  4MUX A;  2EN5 A;  2EGS A;  2ELE A;  2EL1 A;  2E8R A;  2ED3 A;  3KEM A;  4H4D A;  2DSH A;  2EHC A;  2DXW A;  2EJK A;  2PCH A;  5HW4 A;  3DNF A;  3HH1 A;  3UV7 A;  1VE2 A;  1CBF A;  1V9A A;  2DSI A;  2EJJ A;  2E0N A;  1S4D A;  2EMU A;  2ENI A;  3FQ6 A;  2E08 A;  2DSG A;  2EMR A;  2HUT A;  2EEQ A;  2PB5 A;  1VCE A;  2EH5 A;  3UTC A;  3KE8 A;  1VA0 A;  2E8S A;  2E16 A;  2EK2 A;  3TIX B;  2YBQ A;  3KEL A;  2P2X A;  3KEF A;  3UTD A;  2DV7 A;  4EB3 A;  3ND1 A;  1VHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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