2P2XA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIMKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p2xA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p2xA01
2OWGA 2P5CA 2YBOA 2PCMA 2HUXA 3ND1A 2EN5A 2EHCA 2EMUA 2EL1A 2DV4A 2P5FA 2DV3A 2DV5A 2P6KA 3I4TA 2ELDA 2ZVCA 2EHLA 2ED3A 2E07A 2Z6RA 5HW4A 1S4DA 2E16A 2PB4A 2DSHA 2OWUA 2HUTA 2EH2A 2E08A 2OWKA 2PCAA 2QBUA 2DEKA 2EJJA 3NUTA 1WNGA 2P2XA 3FFYA 3KWPA 3FQ6A 2OWVA 2EEQA 2DV7A 2E4NA 2E17A 2HUQA 2E8QA 2EL3A 4E16A 2EK3A 2EL2A 2DXXA 2HUVA 2DXVA 3HH1A 2E0KA 2EH4A 2EL0A 2ED5A 1V9AA 2P6DA 2DSGA 2P6IA 2NPNA 2PCHA 2BB3A 1VHVA 2EGBA 2E15A 2E7RA 2EMRA 1VCEA 2DXWA 1PJTA 2YBQA 3NEIA 1CBFA 2EKAA 2ENIA 2EK7A 2EH5A 1PJQA 2PB6A 2EGLA 2EGSA 3NDCA 2ZVBA 2EK2A 2EK4A 2HR8A 2P9DA 2E8HA 2PCGA 1WDEA 2E4RA 2E8RA 1VA0A 2E0NA 2EJZA 1PJSA 1VE2A 2E8SA 2EJKA 2DSIA 2P6LA 2PCIA 2PB5A 1WYZA 2ELEA 2PCKA 2OWFA 2CBFA
chains in the Genus database with same CATH superfamily
2OWGA 2P5CA 2YBOA 2PCMA 3UTCA 2HUXA 4MV0A 3ND1A 2EN5A 3UV7A 2EHCA 2EMUA 2EL1A 2DV4A 2P5FA 2DV3A 3UWMA 2DV5A 3KELA 2P6KA 3I4TA 3T0FA 2ELDA 2ZVCA 2EHLA 2ED3A 3KEFA 2E07A 2Z6RA 5HW4A 1S4DA 2E16A 2PB4A 2DSHA 2OWUA 2HUTA 2EH2A 2E08A 3SZOA 2OWKA 2PCAA 2QBUA 4MUYA 2DEKA 2EJJA 4MV5A 3T0GA 3NUTA 1WNGA 2P2XA 3FFYA 3KWPA 3FQ6A 2OWVA 2EEQA 2DV7A 3UTDA 2E4NA 2E17A 2HUQA 3URKA 2E8QA 2EL3A 3SZUA 4E16A 2EK3A 3TIXB 2EL2A 2DXXA 2HUVA 2DXVA 3HH1A 2E0KA 2EH4A 2EL0A 2ED5A 1V9AA 2P6DA 3UV6A 2DSGA 2P6IA 2NPNA 2PCHA 2BB3A 1VHVA 2EGBA 2E15A 2E7RA 2EMRA 1VCEA 2DXWA 1PJTA 2YBQA 3NEIA 3DNFA 3ZGNA 1CBFA 2EKAA 3F7TA 3KE8A 2ENIA 2EK7A 2EH5A 1PJQA 2PB6A 2EGLA 2EGSA 3NDCA 4H4EA 2ZVBA 2EK2A 2EK4A 2HR8A 2P9DA 2E8HA 3KE9A 2PCGA 4H4DA 3LMMA 1WDEA 2E4RA 3KEMA 3SZLA 3UV3A 2E8RA 2KYYA 1VA0A 4H4CA 2E0NA 4MUXA 2EJZA 1PJSA 1VE2A 2E8SA 2EJKA 2DSIA 2P6LA 2PCIA 2PB5A 4N7BA 1WYZA 2ELEA 4EB3A 2PCKA 2OWFA 3ZGLA 2CBFA
chains in the Genus database with same CATH topology
2OWGA 2P5CA 2YBOA 2PCMA 3UTCA 2HUXA 4MV0A 3ND1A 2EN5A 3UV7A 2EHCA 2EMUA 2EL1A 2DV4A 2P5FA 2DV3A 3UWMA 2DV5A 3KELA 2P6KA 3I4TA 3T0FA 2ELDA 2ZVCA 2EHLA 2ED3A 3KEFA 2E07A 2Z6RA 5HW4A 1S4DA 2E16A 2PB4A 2DSHA 2OWUA 2HUTA 2EH2A 2E08A 3SZOA 2OWKA 2PCAA 2QBUA 4MUYA 2DEKA 2EJJA 4MV5A 3T0GA 3NUTA 1WNGA 2P2XA 3FFYA 3KWPA 3FQ6A 2OWVA 2EEQA 2DV7A 3UTDA 2E4NA 2E17A 2HUQA 3URKA 2E8QA 2EL3A 3SZUA 4E16A 2EK3A 3TIXB 2EL2A 2DXXA 2HUVA 2DXVA 3HH1A 2E0KA 2EH4A 2EL0A 2ED5A 1V9AA 2P6DA 3UV6A 2DSGA 2P6IA 2NPNA 2PCHA 2BB3A 1VHVA 2EGBA 2E15A 2E7RA 2EMRA 1VCEA 2DXWA 1PJTA 2YBQA 3NEIA 3DNFA 3ZGNA 1CBFA 2EKAA 3F7TA 3KE8A 2ENIA 2EK7A 2EH5A 1PJQA 2PB6A 2EGLA 2EGSA 3NDCA 4H4EA 2ZVBA 2EK2A 2EK4A 2HR8A 2P9DA 2E8HA 3KE9A 2PCGA 4H4DA 3LMMA 1WDEA 2E4RA 3KEMA 3SZLA 3UV3A 2E8RA 2KYYA 1VA0A 4H4CA 2E0NA 4MUXA 2EJZA 1PJSA 1VE2A 2E8SA 2EJKA 2DSIA 2P6LA 2PCIA 2PB5A 4N7BA 1WYZA 2ELEA 4EB3A 2PCKA 2OWFA 3ZGLA 2CBFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWG A;  2P5C A;  2YBO A;  2PCM A;  2HUX A;  3ND1 A;  2EN5 A;  2EHC A;  2EMU A;  2EL1 A;  2DV4 A;  2P5F A;  2DV3 A;  2DV5 A;  2P6K A;  3I4T A;  2ELD A;  2ZVC A;  2EHL A;  2ED3 A;  2E07 A;  2Z6R A;  5HW4 A;  1S4D A;  2E16 A;  2PB4 A;  2DSH A;  2OWU A;  2HUT A;  2EH2 A;  2E08 A;  2OWK A;  2PCA A;  2QBU A;  2DEK A;  2EJJ A;  3NUT A;  1WNG A;  2P2X A;  3FFY A;  3KWP A;  3FQ6 A;  2OWV A;  2EEQ A;  2DV7 A;  2E4N A;  2E17 A;  2HUQ A;  2E8Q A;  2EL3 A;  4E16 A;  2EK3 A;  2EL2 A;  2DXX A;  2HUV A;  2DXV A;  3HH1 A;  2E0K A;  2EH4 A;  2EL0 A;  2ED5 A;  1V9A A;  2P6D A;  2DSG A;  2P6I A;  2NPN A;  2PCH A;  2BB3 A;  1VHV A;  2EGB A;  2E15 A;  2E7R A;  2EMR A;  1VCE A;  2DXW A;  1PJT A;  2YBQ A;  3NEI A;  1CBF A;  2EKA A;  2ENI A;  2EK7 A;  2EH5 A;  1PJQ A;  2PB6 A;  2EGL A;  2EGS A;  3NDC A;  2ZVB A;  2EK2 A;  2EK4 A;  2HR8 A;  2P9D A;  2E8H A;  2PCG A;  1WDE A;  2E4R A;  2E8R A;  1VA0 A;  2E0N A;  2EJZ A;  1PJS A;  1VE2 A;  2E8S A;  2EJK A;  2DSI A;  2P6L A;  2PCI A;  2PB5 A;  1WYZ A;  2ELE A;  2PCK A;  2OWF A;  2CBF A; 
#chains in the Genus database with same CATH topology
 2OWG A;  2P5C A;  2YBO A;  2PCM A;  3UTC A;  2HUX A;  4MV0 A;  3ND1 A;  2EN5 A;  3UV7 A;  2EHC A;  2EMU A;  2EL1 A;  2DV4 A;  2P5F A;  2DV3 A;  3UWM A;  2DV5 A;  3KEL A;  2P6K A;  3I4T A;  3T0F A;  2ELD A;  2ZVC A;  2EHL A;  2ED3 A;  3KEF A;  2E07 A;  2Z6R A;  5HW4 A;  1S4D A;  2E16 A;  2PB4 A;  2DSH A;  2OWU A;  2HUT A;  2EH2 A;  2E08 A;  3SZO A;  2OWK A;  2PCA A;  2QBU A;  4MUY A;  2DEK A;  2EJJ A;  4MV5 A;  3T0G A;  3NUT A;  1WNG A;  2P2X A;  3FFY A;  3KWP A;  3FQ6 A;  2OWV A;  2EEQ A;  2DV7 A;  3UTD A;  2E4N A;  2E17 A;  2HUQ A;  3URK A;  2E8Q A;  2EL3 A;  3SZU A;  4E16 A;  2EK3 A;  3TIX B;  2EL2 A;  2DXX A;  2HUV A;  2DXV A;  3HH1 A;  2E0K A;  2EH4 A;  2EL0 A;  2ED5 A;  1V9A A;  2P6D A;  3UV6 A;  2DSG A;  2P6I A;  2NPN A;  2PCH A;  2BB3 A;  1VHV A;  2EGB A;  2E15 A;  2E7R A;  2EMR A;  1VCE A;  2DXW A;  1PJT A;  2YBQ A;  3NEI A;  3DNF A;  3ZGN A;  1CBF A;  2EKA A;  3F7T A;  3KE8 A;  2ENI A;  2EK7 A;  2EH5 A;  1PJQ A;  2PB6 A;  2EGL A;  2EGS A;  3NDC A;  4H4E A;  2ZVB A;  2EK2 A;  2EK4 A;  2HR8 A;  2P9D A;  2E8H A;  3KE9 A;  2PCG A;  4H4D A;  3LMM A;  1WDE A;  2E4R A;  3KEM A;  3SZL A;  3UV3 A;  2E8R A;  2KYY A;  1VA0 A;  4H4C A;  2E0N A;  4MUX A;  2EJZ A;  1PJS A;  1VE2 A;  2E8S A;  2EJK A;  2DSI A;  2P6L A;  2PCI A;  2PB5 A;  4N7B A;  1WYZ A;  2ELE A;  4EB3 A;  2PCK A;  2OWF A;  3ZGL A;  2CBF A; 
#chains in the Genus database with same CATH homology
 2OWG A;  2P5C A;  2YBO A;  2PCM A;  3UTC A;  2HUX A;  4MV0 A;  3ND1 A;  2EN5 A;  3UV7 A;  2EHC A;  2EMU A;  2EL1 A;  2DV4 A;  2P5F A;  2DV3 A;  3UWM A;  2DV5 A;  3KEL A;  2P6K A;  3I4T A;  3T0F A;  2ELD A;  2ZVC A;  2EHL A;  2ED3 A;  3KEF A;  2E07 A;  2Z6R A;  5HW4 A;  1S4D A;  2E16 A;  2PB4 A;  2DSH A;  2OWU A;  2HUT A;  2EH2 A;  2E08 A;  3SZO A;  2OWK A;  2PCA A;  2QBU A;  4MUY A;  2DEK A;  2EJJ A;  4MV5 A;  3T0G A;  3NUT A;  1WNG A;  2P2X A;  3FFY A;  3KWP A;  3FQ6 A;  2OWV A;  2EEQ A;  2DV7 A;  3UTD A;  2E4N A;  2E17 A;  2HUQ A;  3URK A;  2E8Q A;  2EL3 A;  3SZU A;  4E16 A;  2EK3 A;  3TIX B;  2EL2 A;  2DXX A;  2HUV A;  2DXV A;  3HH1 A;  2E0K A;  2EH4 A;  2EL0 A;  2ED5 A;  1V9A A;  2P6D A;  3UV6 A;  2DSG A;  2P6I A;  2NPN A;  2PCH A;  2BB3 A;  1VHV A;  2EGB A;  2E15 A;  2E7R A;  2EMR A;  1VCE A;  2DXW A;  1PJT A;  2YBQ A;  3NEI A;  3DNF A;  3ZGN A;  1CBF A;  2EKA A;  3F7T A;  3KE8 A;  2ENI A;  2EK7 A;  2EH5 A;  1PJQ A;  2PB6 A;  2EGL A;  2EGS A;  3NDC A;  4H4E A;  2ZVB A;  2EK2 A;  2EK4 A;  2HR8 A;  2P9D A;  2E8H A;  3KE9 A;  2PCG A;  4H4D A;  3LMM A;  1WDE A;  2E4R A;  3KEM A;  3SZL A;  3UV3 A;  2E8R A;  2KYY A;  1VA0 A;  4H4C A;  2E0N A;  4MUX A;  2EJZ A;  1PJS A;  1VE2 A;  2E8S A;  2EJK A;  2DSI A;  2P6L A;  2PCI A;  2PB5 A;  4N7B A;  1WYZ A;  2ELE A;  4EB3 A;  2PCK A;  2OWF A;  3ZGL A;  2CBF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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