2P2XA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIMKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p2xA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p2xA01
2ENIA 2EK3A 2E0KA 2BB3A 2OWVA 1WNGA 2EGSA 2OWFA 3FFYA 2E4NA 2ED3A 2P6LA 2PB5A 2YBOA 2EMUA 2DSHA 1VHVA 1PJTA 1CBFA 2E15A 2PCHA 2EH4A 2HUXA 2P9DA 2EEQA 2OWUA 1S4DA 2PCIA 3KWPA 2E8QA 2DEKA 2EK2A 2EL3A 2P5CA 2EN5A 2EK4A 3HH1A 3ND1A 2EL2A 2P2XA 1WYZA 2P5FA 2DXVA 2EJJA 2E17A 1VE2A 3I4TA 2E16A 3FQ6A 2ELDA 2Z6RA 2EHCA 2EMRA 2EGBA 1PJQA 2DXWA 2HUTA 2EH5A 1VCEA 1WDEA 2EK7A 2E8RA 2DV3A 2EGLA 2YBQA 3NUTA 2EL1A 2PCGA 2E4RA 2ELEA 2PCAA 2EHLA 2QBUA 2E8HA 1VA0A 2PCKA 1PJSA 2EH2A 3NEIA 2DSGA 2ZVCA 2E7RA 3NDCA 2HUQA 2HR8A 2OWKA 2OWGA 2PB6A 2EKAA 2PCMA 2P6IA 2E0NA 2EL0A 2DV4A 2E08A 4E16A 2ED5A 2ZVBA 2EJZA 2NPNA 2DXXA 2P6KA 2CBFA 2EJKA 2DV7A 2DV5A 2HUVA 2E07A 2P6DA 5HW4A 2E8SA 2DSIA 2PB4A 1V9AA
chains in the Genus database with same CATH superfamily
3UV7A 2ENIA 2EK3A 3TIXB 2E0KA 2BB3A 2OWVA 1WNGA 2EGSA 3KELA 2OWFA 3FFYA 2E4NA 2ED3A 2P6LA 4MUXA 2PB5A 2YBOA 3KE8A 2EMUA 2DSHA 4H4EA 1VHVA 1PJTA 1CBFA 2E15A 2PCHA 3SZLA 2EH4A 2HUXA 3ZGLA 2P9DA 2EEQA 3F7TA 2OWUA 1S4DA 3T0GA 2PCIA 3UV6A 3KWPA 2E8QA 2DEKA 2EK2A 2EL3A 2P5CA 2EN5A 2EK4A 3HH1A 3ND1A 3SZOA 2EL2A 2P2XA 1WYZA 2P5FA 2DXVA 2EJJA 2E17A 1VE2A 3I4TA 2E16A 3FQ6A 3KEMA 2ELDA 2Z6RA 4N7BA 2EHCA 3T0FA 2EMRA 2EGBA 1PJQA 2DXWA 2HUTA 2EH5A 1VCEA 1WDEA 2EK7A 2KYYA 2E8RA 3UWMA 2DV3A 2EGLA 2YBQA 3NUTA 2EL1A 3LMMA 2PCGA 2E4RA 2ELEA 2PCAA 2EHLA 2QBUA 2E8HA 1VA0A 2PCKA 1PJSA 3SZUA 2EH2A 3KE9A 3UTDA 3UV3A 3NEIA 3KEFA 2DSGA 2ZVCA 2E7RA 3NDCA 2HUQA 2HR8A 2OWKA 2OWGA 2PB6A 2EKAA 2PCMA 2P6IA 2E0NA 4EB3A 2EL0A 3ZGNA 3DNFA 4MUYA 3URKA 2DV4A 4MV5A 4H4CA 2E08A 4E16A 2ED5A 2ZVBA 2EJZA 2NPNA 2DXXA 2P6KA 3UTCA 2CBFA 2EJKA 2DV7A 2DV5A 2HUVA 2E07A 2P6DA 5HW4A 2E8SA 4H4DA 4MV0A 2DSIA 2PB4A 1V9AA
chains in the Genus database with same CATH topology
3UV7A 2ENIA 2EK3A 3TIXB 2E0KA 2BB3A 2OWVA 1WNGA 2EGSA 3KELA 2OWFA 3FFYA 2E4NA 2ED3A 2P6LA 4MUXA 2PB5A 2YBOA 3KE8A 2EMUA 2DSHA 4H4EA 1VHVA 1PJTA 1CBFA 2E15A 2PCHA 3SZLA 2EH4A 2HUXA 3ZGLA 2P9DA 2EEQA 3F7TA 2OWUA 1S4DA 3T0GA 2PCIA 3UV6A 3KWPA 2E8QA 2DEKA 2EK2A 2EL3A 2P5CA 2EN5A 2EK4A 3HH1A 3ND1A 3SZOA 2EL2A 2P2XA 1WYZA 2P5FA 2DXVA 2EJJA 2E17A 1VE2A 3I4TA 2E16A 3FQ6A 3KEMA 2ELDA 2Z6RA 4N7BA 2EHCA 3T0FA 2EMRA 2EGBA 1PJQA 2DXWA 2HUTA 2EH5A 1VCEA 1WDEA 2EK7A 2KYYA 2E8RA 3UWMA 2DV3A 2EGLA 2YBQA 3NUTA 2EL1A 3LMMA 2PCGA 2E4RA 2ELEA 2PCAA 2EHLA 2QBUA 2E8HA 1VA0A 2PCKA 1PJSA 3SZUA 2EH2A 3KE9A 3UTDA 3UV3A 3NEIA 3KEFA 2DSGA 2ZVCA 2E7RA 3NDCA 2HUQA 2HR8A 2OWKA 2OWGA 2PB6A 2EKAA 2PCMA 2P6IA 2E0NA 4EB3A 2EL0A 3ZGNA 3DNFA 4MUYA 3URKA 2DV4A 4MV5A 4H4CA 2E08A 4E16A 2ED5A 2ZVBA 2EJZA 2NPNA 2DXXA 2P6KA 3UTCA 2CBFA 2EJKA 2DV7A 2DV5A 2HUVA 2E07A 2P6DA 5HW4A 2E8SA 4H4DA 4MV0A 2DSIA 2PB4A 1V9AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ENI A;  2EK3 A;  2E0K A;  2BB3 A;  2OWV A;  1WNG A;  2EGS A;  2OWF A;  3FFY A;  2E4N A;  2ED3 A;  2P6L A;  2PB5 A;  2YBO A;  2EMU A;  2DSH A;  1VHV A;  1PJT A;  1CBF A;  2E15 A;  2PCH A;  2EH4 A;  2HUX A;  2P9D A;  2EEQ A;  2OWU A;  1S4D A;  2PCI A;  3KWP A;  2E8Q A;  2DEK A;  2EK2 A;  2EL3 A;  2P5C A;  2EN5 A;  2EK4 A;  3HH1 A;  3ND1 A;  2EL2 A;  2P2X A;  1WYZ A;  2P5F A;  2DXV A;  2EJJ A;  2E17 A;  1VE2 A;  3I4T A;  2E16 A;  3FQ6 A;  2ELD A;  2Z6R A;  2EHC A;  2EMR A;  2EGB A;  1PJQ A;  2DXW A;  2HUT A;  2EH5 A;  1VCE A;  1WDE A;  2EK7 A;  2E8R A;  2DV3 A;  2EGL A;  2YBQ A;  3NUT A;  2EL1 A;  2PCG A;  2E4R A;  2ELE A;  2PCA A;  2EHL A;  2QBU A;  2E8H A;  1VA0 A;  2PCK A;  1PJS A;  2EH2 A;  3NEI A;  2DSG A;  2ZVC A;  2E7R A;  3NDC A;  2HUQ A;  2HR8 A;  2OWK A;  2OWG A;  2PB6 A;  2EKA A;  2PCM A;  2P6I A;  2E0N A;  2EL0 A;  2DV4 A;  2E08 A;  4E16 A;  2ED5 A;  2ZVB A;  2EJZ A;  2NPN A;  2DXX A;  2P6K A;  2CBF A;  2EJK A;  2DV7 A;  2DV5 A;  2HUV A;  2E07 A;  2P6D A;  5HW4 A;  2E8S A;  2DSI A;  2PB4 A;  1V9A A; 
#chains in the Genus database with same CATH topology
 3UV7 A;  2ENI A;  2EK3 A;  3TIX B;  2E0K A;  2BB3 A;  2OWV A;  1WNG A;  2EGS A;  3KEL A;  2OWF A;  3FFY A;  2E4N A;  2ED3 A;  2P6L A;  4MUX A;  2PB5 A;  2YBO A;  3KE8 A;  2EMU A;  2DSH A;  4H4E A;  1VHV A;  1PJT A;  1CBF A;  2E15 A;  2PCH A;  3SZL A;  2EH4 A;  2HUX A;  3ZGL A;  2P9D A;  2EEQ A;  3F7T A;  2OWU A;  1S4D A;  3T0G A;  2PCI A;  3UV6 A;  3KWP A;  2E8Q A;  2DEK A;  2EK2 A;  2EL3 A;  2P5C A;  2EN5 A;  2EK4 A;  3HH1 A;  3ND1 A;  3SZO A;  2EL2 A;  2P2X A;  1WYZ A;  2P5F A;  2DXV A;  2EJJ A;  2E17 A;  1VE2 A;  3I4T A;  2E16 A;  3FQ6 A;  3KEM A;  2ELD A;  2Z6R A;  4N7B A;  2EHC A;  3T0F A;  2EMR A;  2EGB A;  1PJQ A;  2DXW A;  2HUT A;  2EH5 A;  1VCE A;  1WDE A;  2EK7 A;  2KYY A;  2E8R A;  3UWM A;  2DV3 A;  2EGL A;  2YBQ A;  3NUT A;  2EL1 A;  3LMM A;  2PCG A;  2E4R A;  2ELE A;  2PCA A;  2EHL A;  2QBU A;  2E8H A;  1VA0 A;  2PCK A;  1PJS A;  3SZU A;  2EH2 A;  3KE9 A;  3UTD A;  3UV3 A;  3NEI A;  3KEF A;  2DSG A;  2ZVC A;  2E7R A;  3NDC A;  2HUQ A;  2HR8 A;  2OWK A;  2OWG A;  2PB6 A;  2EKA A;  2PCM A;  2P6I A;  2E0N A;  4EB3 A;  2EL0 A;  3ZGN A;  3DNF A;  4MUY A;  3URK A;  2DV4 A;  4MV5 A;  4H4C A;  2E08 A;  4E16 A;  2ED5 A;  2ZVB A;  2EJZ A;  2NPN A;  2DXX A;  2P6K A;  3UTC A;  2CBF A;  2EJK A;  2DV7 A;  2DV5 A;  2HUV A;  2E07 A;  2P6D A;  5HW4 A;  2E8S A;  4H4D A;  4MV0 A;  2DSI A;  2PB4 A;  1V9A A; 
#chains in the Genus database with same CATH homology
 3UV7 A;  2ENI A;  2EK3 A;  3TIX B;  2E0K A;  2BB3 A;  2OWV A;  1WNG A;  2EGS A;  3KEL A;  2OWF A;  3FFY A;  2E4N A;  2ED3 A;  2P6L A;  4MUX A;  2PB5 A;  2YBO A;  3KE8 A;  2EMU A;  2DSH A;  4H4E A;  1VHV A;  1PJT A;  1CBF A;  2E15 A;  2PCH A;  3SZL A;  2EH4 A;  2HUX A;  3ZGL A;  2P9D A;  2EEQ A;  3F7T A;  2OWU A;  1S4D A;  3T0G A;  2PCI A;  3UV6 A;  3KWP A;  2E8Q A;  2DEK A;  2EK2 A;  2EL3 A;  2P5C A;  2EN5 A;  2EK4 A;  3HH1 A;  3ND1 A;  3SZO A;  2EL2 A;  2P2X A;  1WYZ A;  2P5F A;  2DXV A;  2EJJ A;  2E17 A;  1VE2 A;  3I4T A;  2E16 A;  3FQ6 A;  3KEM A;  2ELD A;  2Z6R A;  4N7B A;  2EHC A;  3T0F A;  2EMR A;  2EGB A;  1PJQ A;  2DXW A;  2HUT A;  2EH5 A;  1VCE A;  1WDE A;  2EK7 A;  2KYY A;  2E8R A;  3UWM A;  2DV3 A;  2EGL A;  2YBQ A;  3NUT A;  2EL1 A;  3LMM A;  2PCG A;  2E4R A;  2ELE A;  2PCA A;  2EHL A;  2QBU A;  2E8H A;  1VA0 A;  2PCK A;  1PJS A;  3SZU A;  2EH2 A;  3KE9 A;  3UTD A;  3UV3 A;  3NEI A;  3KEF A;  2DSG A;  2ZVC A;  2E7R A;  3NDC A;  2HUQ A;  2HR8 A;  2OWK A;  2OWG A;  2PB6 A;  2EKA A;  2PCM A;  2P6I A;  2E0N A;  4EB3 A;  2EL0 A;  3ZGN A;  3DNF A;  4MUY A;  3URK A;  2DV4 A;  4MV5 A;  4H4C A;  2E08 A;  4E16 A;  2ED5 A;  2ZVB A;  2EJZ A;  2NPN A;  2DXX A;  2P6K A;  3UTC A;  2CBF A;  2EJK A;  2DV7 A;  2DV5 A;  2HUV A;  2E07 A;  2P6D A;  5HW4 A;  2E8S A;  4H4D A;  4MV0 A;  2DSI A;  2PB4 A;  1V9A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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