2P2XA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIMKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p2xA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p2xA01
2P5FA 2DXWA 2P6DA 1VA0A 3FFYA 2E08A 2E15A 3HH1A 2EL3A 3NEIA 2EK2A 2EHLA 3NUTA 2OWUA 2HUQA 3I4TA 2DXXA 2OWFA 2E7RA 2EGLA 2EEQA 2DV4A 3NDCA 5HW4A 1VHVA 1VCEA 2OWKA 2EKAA 2ELEA 2EL1A 2ENIA 2YBOA 1WNGA 2DSIA 2EGBA 2P6IA 2E16A 1WDEA 2QBUA 2EHCA 2DV3A 2HUTA 2E4RA 2EH2A 2EJKA 2PCKA 2DSHA 2PCMA 2E4NA 2OWVA 2P2XA 1V9AA 2EH4A 2PCGA 1S4DA 2EMUA 1WYZA 2EK4A 2EN5A 4E16A 2HUXA 2PB4A 2PCAA 2E07A 1VE2A 2BB3A 2PCHA 2ZVBA 3KWPA 2EJZA 1PJSA 2E8SA 2P9DA 2DEKA 2PB5A 2E0NA 2EGSA 3FQ6A 2EK7A 3ND1A 2ZVCA 2HR8A 2P6KA 2E8HA 2NPNA 2ED5A 1CBFA 2EK3A 2DXVA 2EL0A 2EMRA 2PB6A 2EJJA 1PJQA 2E17A 2OWGA 2YBQA 2ELDA 2Z6RA 2EL2A 2P6LA 1PJTA 2ED3A 2P5CA 2E8RA 2CBFA 2E8QA 2PCIA 2DSGA 2DV5A 2DV7A 2EH5A 2HUVA 2E0KA
chains in the Genus database with same CATH superfamily
2P5FA 2DXWA 2P6DA 4H4EA 3ZGLA 3LMMA 1VA0A 3FFYA 2E08A 2E15A 3HH1A 2EL3A 3NEIA 2EK2A 2EHLA 3NUTA 2OWUA 3UTDA 2HUQA 3I4TA 3UV3A 2DXXA 2OWFA 2E7RA 2EGLA 3KE8A 2EEQA 2DV4A 3SZLA 3NDCA 5HW4A 1VHVA 1VCEA 4N7BA 2OWKA 2EKAA 4MV0A 2ELEA 2EL1A 2ENIA 2YBOA 1WNGA 2DSIA 2EGBA 2P6IA 2E16A 1WDEA 2QBUA 2EHCA 2DV3A 2HUTA 2E4RA 4EB3A 2EH2A 2EJKA 2PCKA 2DSHA 3F7TA 2PCMA 2E4NA 2OWVA 2P2XA 1V9AA 2EH4A 2PCGA 1S4DA 3UV6A 4MUYA 3KE9A 2EMUA 1WYZA 3T0GA 2EK4A 3KELA 2EN5A 4E16A 2HUXA 2PB4A 3SZOA 2PCAA 3SZUA 2E07A 1VE2A 3ZGNA 2BB3A 2PCHA 2ZVBA 3KWPA 2EJZA 4MV5A 1PJSA 3URKA 2E8SA 2P9DA 3KEMA 2DEKA 3T0FA 2PB5A 2E0NA 3KEFA 2EGSA 4H4DA 3FQ6A 2EK7A 3ND1A 2ZVCA 2HR8A 2P6KA 2E8HA 2NPNA 2ED5A 1CBFA 2EK3A 2DXVA 2EL0A 3DNFA 3TIXB 2EMRA 3UV7A 2PB6A 2EJJA 1PJQA 2E17A 2OWGA 2YBQA 2ELDA 2Z6RA 2EL2A 2P6LA 1PJTA 2ED3A 4MUXA 2P5CA 3UWMA 2E8RA 2CBFA 2E8QA 2PCIA 2KYYA 2DSGA 3UTCA 2DV5A 2DV7A 2EH5A 2HUVA 2E0KA 4H4CA
chains in the Genus database with same CATH topology
2P5FA 2DXWA 2P6DA 4H4EA 3ZGLA 3LMMA 1VA0A 3FFYA 2E08A 2E15A 3HH1A 2EL3A 3NEIA 2EK2A 2EHLA 3NUTA 2OWUA 3UTDA 2HUQA 3I4TA 3UV3A 2DXXA 2OWFA 2E7RA 2EGLA 3KE8A 2EEQA 2DV4A 3SZLA 3NDCA 5HW4A 1VHVA 1VCEA 4N7BA 2OWKA 2EKAA 4MV0A 2ELEA 2EL1A 2ENIA 2YBOA 1WNGA 2DSIA 2EGBA 2P6IA 2E16A 1WDEA 2QBUA 2EHCA 2DV3A 2HUTA 2E4RA 4EB3A 2EH2A 2EJKA 2PCKA 2DSHA 3F7TA 2PCMA 2E4NA 2OWVA 2P2XA 1V9AA 2EH4A 2PCGA 1S4DA 3UV6A 4MUYA 3KE9A 2EMUA 1WYZA 3T0GA 2EK4A 3KELA 2EN5A 4E16A 2HUXA 2PB4A 3SZOA 2PCAA 3SZUA 2E07A 1VE2A 3ZGNA 2BB3A 2PCHA 2ZVBA 3KWPA 2EJZA 4MV5A 1PJSA 3URKA 2E8SA 2P9DA 3KEMA 2DEKA 3T0FA 2PB5A 2E0NA 3KEFA 2EGSA 4H4DA 3FQ6A 2EK7A 3ND1A 2ZVCA 2HR8A 2P6KA 2E8HA 2NPNA 2ED5A 1CBFA 2EK3A 2DXVA 2EL0A 3DNFA 3TIXB 2EMRA 3UV7A 2PB6A 2EJJA 1PJQA 2E17A 2OWGA 2YBQA 2ELDA 2Z6RA 2EL2A 2P6LA 1PJTA 2ED3A 4MUXA 2P5CA 3UWMA 2E8RA 2CBFA 2E8QA 2PCIA 2KYYA 2DSGA 3UTCA 2DV5A 2DV7A 2EH5A 2HUVA 2E0KA 4H4CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P5F A;  2DXW A;  2P6D A;  1VA0 A;  3FFY A;  2E08 A;  2E15 A;  3HH1 A;  2EL3 A;  3NEI A;  2EK2 A;  2EHL A;  3NUT A;  2OWU A;  2HUQ A;  3I4T A;  2DXX A;  2OWF A;  2E7R A;  2EGL A;  2EEQ A;  2DV4 A;  3NDC A;  5HW4 A;  1VHV A;  1VCE A;  2OWK A;  2EKA A;  2ELE A;  2EL1 A;  2ENI A;  2YBO A;  1WNG A;  2DSI A;  2EGB A;  2P6I A;  2E16 A;  1WDE A;  2QBU A;  2EHC A;  2DV3 A;  2HUT A;  2E4R A;  2EH2 A;  2EJK A;  2PCK A;  2DSH A;  2PCM A;  2E4N A;  2OWV A;  2P2X A;  1V9A A;  2EH4 A;  2PCG A;  1S4D A;  2EMU A;  1WYZ A;  2EK4 A;  2EN5 A;  4E16 A;  2HUX A;  2PB4 A;  2PCA A;  2E07 A;  1VE2 A;  2BB3 A;  2PCH A;  2ZVB A;  3KWP A;  2EJZ A;  1PJS A;  2E8S A;  2P9D A;  2DEK A;  2PB5 A;  2E0N A;  2EGS A;  3FQ6 A;  2EK7 A;  3ND1 A;  2ZVC A;  2HR8 A;  2P6K A;  2E8H A;  2NPN A;  2ED5 A;  1CBF A;  2EK3 A;  2DXV A;  2EL0 A;  2EMR A;  2PB6 A;  2EJJ A;  1PJQ A;  2E17 A;  2OWG A;  2YBQ A;  2ELD A;  2Z6R A;  2EL2 A;  2P6L A;  1PJT A;  2ED3 A;  2P5C A;  2E8R A;  2CBF A;  2E8Q A;  2PCI A;  2DSG A;  2DV5 A;  2DV7 A;  2EH5 A;  2HUV A;  2E0K A; 
#chains in the Genus database with same CATH topology
 2P5F A;  2DXW A;  2P6D A;  4H4E A;  3ZGL A;  3LMM A;  1VA0 A;  3FFY A;  2E08 A;  2E15 A;  3HH1 A;  2EL3 A;  3NEI A;  2EK2 A;  2EHL A;  3NUT A;  2OWU A;  3UTD A;  2HUQ A;  3I4T A;  3UV3 A;  2DXX A;  2OWF A;  2E7R A;  2EGL A;  3KE8 A;  2EEQ A;  2DV4 A;  3SZL A;  3NDC A;  5HW4 A;  1VHV A;  1VCE A;  4N7B A;  2OWK A;  2EKA A;  4MV0 A;  2ELE A;  2EL1 A;  2ENI A;  2YBO A;  1WNG A;  2DSI A;  2EGB A;  2P6I A;  2E16 A;  1WDE A;  2QBU A;  2EHC A;  2DV3 A;  2HUT A;  2E4R A;  4EB3 A;  2EH2 A;  2EJK A;  2PCK A;  2DSH A;  3F7T A;  2PCM A;  2E4N A;  2OWV A;  2P2X A;  1V9A A;  2EH4 A;  2PCG A;  1S4D A;  3UV6 A;  4MUY A;  3KE9 A;  2EMU A;  1WYZ A;  3T0G A;  2EK4 A;  3KEL A;  2EN5 A;  4E16 A;  2HUX A;  2PB4 A;  3SZO A;  2PCA A;  3SZU A;  2E07 A;  1VE2 A;  3ZGN A;  2BB3 A;  2PCH A;  2ZVB A;  3KWP A;  2EJZ A;  4MV5 A;  1PJS A;  3URK A;  2E8S A;  2P9D A;  3KEM A;  2DEK A;  3T0F A;  2PB5 A;  2E0N A;  3KEF A;  2EGS A;  4H4D A;  3FQ6 A;  2EK7 A;  3ND1 A;  2ZVC A;  2HR8 A;  2P6K A;  2E8H A;  2NPN A;  2ED5 A;  1CBF A;  2EK3 A;  2DXV A;  2EL0 A;  3DNF A;  3TIX B;  2EMR A;  3UV7 A;  2PB6 A;  2EJJ A;  1PJQ A;  2E17 A;  2OWG A;  2YBQ A;  2ELD A;  2Z6R A;  2EL2 A;  2P6L A;  1PJT A;  2ED3 A;  4MUX A;  2P5C A;  3UWM A;  2E8R A;  2CBF A;  2E8Q A;  2PCI A;  2KYY A;  2DSG A;  3UTC A;  2DV5 A;  2DV7 A;  2EH5 A;  2HUV A;  2E0K A;  4H4C A; 
#chains in the Genus database with same CATH homology
 2P5F A;  2DXW A;  2P6D A;  4H4E A;  3ZGL A;  3LMM A;  1VA0 A;  3FFY A;  2E08 A;  2E15 A;  3HH1 A;  2EL3 A;  3NEI A;  2EK2 A;  2EHL A;  3NUT A;  2OWU A;  3UTD A;  2HUQ A;  3I4T A;  3UV3 A;  2DXX A;  2OWF A;  2E7R A;  2EGL A;  3KE8 A;  2EEQ A;  2DV4 A;  3SZL A;  3NDC A;  5HW4 A;  1VHV A;  1VCE A;  4N7B A;  2OWK A;  2EKA A;  4MV0 A;  2ELE A;  2EL1 A;  2ENI A;  2YBO A;  1WNG A;  2DSI A;  2EGB A;  2P6I A;  2E16 A;  1WDE A;  2QBU A;  2EHC A;  2DV3 A;  2HUT A;  2E4R A;  4EB3 A;  2EH2 A;  2EJK A;  2PCK A;  2DSH A;  3F7T A;  2PCM A;  2E4N A;  2OWV A;  2P2X A;  1V9A A;  2EH4 A;  2PCG A;  1S4D A;  3UV6 A;  4MUY A;  3KE9 A;  2EMU A;  1WYZ A;  3T0G A;  2EK4 A;  3KEL A;  2EN5 A;  4E16 A;  2HUX A;  2PB4 A;  3SZO A;  2PCA A;  3SZU A;  2E07 A;  1VE2 A;  3ZGN A;  2BB3 A;  2PCH A;  2ZVB A;  3KWP A;  2EJZ A;  4MV5 A;  1PJS A;  3URK A;  2E8S A;  2P9D A;  3KEM A;  2DEK A;  3T0F A;  2PB5 A;  2E0N A;  3KEF A;  2EGS A;  4H4D A;  3FQ6 A;  2EK7 A;  3ND1 A;  2ZVC A;  2HR8 A;  2P6K A;  2E8H A;  2NPN A;  2ED5 A;  1CBF A;  2EK3 A;  2DXV A;  2EL0 A;  3DNF A;  3TIX B;  2EMR A;  3UV7 A;  2PB6 A;  2EJJ A;  1PJQ A;  2E17 A;  2OWG A;  2YBQ A;  2ELD A;  2Z6R A;  2EL2 A;  2P6L A;  1PJT A;  2ED3 A;  4MUX A;  2P5C A;  3UWM A;  2E8R A;  2CBF A;  2E8Q A;  2PCI A;  2KYY A;  2DSG A;  3UTC A;  2DV5 A;  2DV7 A;  2EH5 A;  2HUV A;  2E0K A;  4H4C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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