1VCEA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 73

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (80-84)AH1 (18-26)S2 (29-33)S3 (56-58)TIV2 (84-87)TIV3 (85-88)S5 (108-111)TI3 (87-90)TIV4 (89-92)AH4 (94-104)AH5 (116-119)3H1 (120-123)AH6 (147-158)S6 (130-136)TII'1 (140-143)S7 (161-166)S9 (215-220)TVIII2 (195-198)TIV6 (211-214)TI4 (198-201)TII1 (208-211)TIV5 (206-209)S8 (202-207)AH8 (221-225)AH9 (244-254)3H5 (258-261)S10 (234-238)S1 (3-7)TI2 (13-16)TIV1 (34-37)3H2 (127-129)AH7 (183-190)3H3 (170-172)3H4 (178-180)AH3 (60-76)TVIII1 (27-30)TI1 (12-15)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 73
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1vceA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1vceA01
2BB3A 2PB6A 2NPNA 3FFYA 2CBFA 2EK4A 1PJQA 2DV3A 2HUQA 3KWPA 2ZVCA 2E0NA 2P6IA 2QBUA 2EN5A 2PCHA 2DXVA 1WDEA 3FQ6A 2PCGA 2E16A 2ED5A 2EK7A 3NUTA 1WNGA 2ED3A 2EMUA 2PCIA 2DV5A 2OWGA 2EGLA 2E07A 1S4DA 2EK2A 1VHVA 2P2XA 2E4RA 2P5CA 3HH1A 2EJJA 2EL1A 2PCAA 1VA0A 2OWKA 2DSHA 2EEQA 3ND1A 2EJZA 2P5FA 2EH5A 2E7RA 2DV7A 2EH4A 2ENIA 1PJTA 2YBOA 2EHCA 2ZVBA 2DSGA 2EGSA 4E16A 2HUXA 2E8QA 3NDCA 2E8HA 2DXWA 1VE2A 2HUVA 2EGBA 2EL2A 2EL3A 3I4TA 2YBQA 2PCMA 2E17A 2OWFA 2DXXA 2OWUA 2EHLA 2OWVA 2P6KA 2HR8A 2EMRA 1CBFA 1VCEA 2P9DA 2E0KA 2P6LA 2EH2A 2DEKA 2EK3A 2HUTA 2E8RA 2ELEA 2EJKA 2P6DA 2PCKA 1WYZA 2E08A 2E8SA 2PB4A 1PJSA 2DSIA 2E4NA 2PB5A 5HW4A 2ELDA 1V9AA 2DV4A 2EL0A 2Z6RA 3NEIA 2EKAA 2E15A
chains in the Genus database with same CATH superfamily
2BB3A 2PB6A 2NPNA 3FFYA 2CBFA 4MUYA 2EK4A 1PJQA 2DV3A 2HUQA 3KWPA 2ZVCA 3T0GA 2E0NA 2P6IA 3SZUA 2QBUA 2EN5A 2PCHA 3ZGLA 2DXVA 1WDEA 3FQ6A 2PCGA 2E16A 2ED5A 2EK7A 3NUTA 1WNGA 2ED3A 2EMUA 2PCIA 2DV5A 2OWGA 2EGLA 2E07A 1S4DA 2EK2A 1VHVA 2P2XA 2E4RA 2P5CA 3KE8A 3HH1A 2EJJA 2EL1A 4MV5A 2PCAA 1VA0A 2OWKA 2DSHA 2EEQA 3ND1A 2EJZA 4H4EA 2KYYA 2P5FA 2EH5A 2E7RA 2DV7A 2EH4A 2ENIA 1PJTA 2YBOA 3TIXB 2EHCA 2ZVBA 3URKA 2DSGA 2EGSA 4E16A 4MUXA 3UV6A 2HUXA 3KELA 2E8QA 3NDCA 3T0FA 2E8HA 2DXWA 3UTDA 1VE2A 2HUVA 2EGBA 3KE9A 2EL2A 2EL3A 3I4TA 2YBQA 2PCMA 2E17A 3SZOA 3KEFA 2OWFA 3DNFA 2DXXA 2OWUA 4N7BA 4H4DA 2EHLA 2OWVA 2P6KA 2HR8A 3UV7A 3F7TA 2EMRA 4MV0A 3UV3A 1CBFA 1VCEA 3LMMA 2P9DA 2E0KA 2P6LA 2EH2A 2DEKA 2EK3A 2HUTA 2E8RA 2ELEA 2EJKA 4EB3A 2P6DA 2PCKA 1WYZA 2E08A 2E8SA 3KEMA 3ZGNA 2PB4A 4H4CA 1PJSA 2DSIA 2E4NA 2PB5A 5HW4A 2ELDA 3UTCA 1V9AA 3SZLA 2DV4A 2EL0A 2Z6RA 3UWMA 3NEIA 2EKAA 2E15A
chains in the Genus database with same CATH topology
2BB3A 2PB6A 2NPNA 3FFYA 2CBFA 4MUYA 2EK4A 1PJQA 2DV3A 2HUQA 3KWPA 2ZVCA 3T0GA 2E0NA 2P6IA 3SZUA 2QBUA 2EN5A 2PCHA 3ZGLA 2DXVA 1WDEA 3FQ6A 2PCGA 2E16A 2ED5A 2EK7A 3NUTA 1WNGA 2ED3A 2EMUA 2PCIA 2DV5A 2OWGA 2EGLA 2E07A 1S4DA 2EK2A 1VHVA 2P2XA 2E4RA 2P5CA 3KE8A 3HH1A 2EJJA 2EL1A 4MV5A 2PCAA 1VA0A 2OWKA 2DSHA 2EEQA 3ND1A 2EJZA 4H4EA 2KYYA 2P5FA 2EH5A 2E7RA 2DV7A 2EH4A 2ENIA 1PJTA 2YBOA 3TIXB 2EHCA 2ZVBA 3URKA 2DSGA 2EGSA 4E16A 4MUXA 3UV6A 2HUXA 3KELA 2E8QA 3NDCA 3T0FA 2E8HA 2DXWA 3UTDA 1VE2A 2HUVA 2EGBA 3KE9A 2EL2A 2EL3A 3I4TA 2YBQA 2PCMA 2E17A 3SZOA 3KEFA 2OWFA 3DNFA 2DXXA 2OWUA 4N7BA 4H4DA 2EHLA 2OWVA 2P6KA 2HR8A 3UV7A 3F7TA 2EMRA 4MV0A 3UV3A 1CBFA 1VCEA 3LMMA 2P9DA 2E0KA 2P6LA 2EH2A 2DEKA 2EK3A 2HUTA 2E8RA 2ELEA 2EJKA 4EB3A 2P6DA 2PCKA 1WYZA 2E08A 2E8SA 3KEMA 3ZGNA 2PB4A 4H4CA 1PJSA 2DSIA 2E4NA 2PB5A 5HW4A 2ELDA 3UTCA 1V9AA 3SZLA 2DV4A 2EL0A 2Z6RA 3UWMA 3NEIA 2EKAA 2E15A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BB3 A;  2PB6 A;  2NPN A;  3FFY A;  2CBF A;  2EK4 A;  1PJQ A;  2DV3 A;  2HUQ A;  3KWP A;  2ZVC A;  2E0N A;  2P6I A;  2QBU A;  2EN5 A;  2PCH A;  2DXV A;  1WDE A;  3FQ6 A;  2PCG A;  2E16 A;  2ED5 A;  2EK7 A;  3NUT A;  1WNG A;  2ED3 A;  2EMU A;  2PCI A;  2DV5 A;  2OWG A;  2EGL A;  2E07 A;  1S4D A;  2EK2 A;  1VHV A;  2P2X A;  2E4R A;  2P5C A;  3HH1 A;  2EJJ A;  2EL1 A;  2PCA A;  1VA0 A;  2OWK A;  2DSH A;  2EEQ A;  3ND1 A;  2EJZ A;  2P5F A;  2EH5 A;  2E7R A;  2DV7 A;  2EH4 A;  2ENI A;  1PJT A;  2YBO A;  2EHC A;  2ZVB A;  2DSG A;  2EGS A;  4E16 A;  2HUX A;  2E8Q A;  3NDC A;  2E8H A;  2DXW A;  1VE2 A;  2HUV A;  2EGB A;  2EL2 A;  2EL3 A;  3I4T A;  2YBQ A;  2PCM A;  2E17 A;  2OWF A;  2DXX A;  2OWU A;  2EHL A;  2OWV A;  2P6K A;  2HR8 A;  2EMR A;  1CBF A;  1VCE A;  2P9D A;  2E0K A;  2P6L A;  2EH2 A;  2DEK A;  2EK3 A;  2HUT A;  2E8R A;  2ELE A;  2EJK A;  2P6D A;  2PCK A;  1WYZ A;  2E08 A;  2E8S A;  2PB4 A;  1PJS A;  2DSI A;  2E4N A;  2PB5 A;  5HW4 A;  2ELD A;  1V9A A;  2DV4 A;  2EL0 A;  2Z6R A;  3NEI A;  2EKA A;  2E15 A; 
#chains in the Genus database with same CATH topology
 2BB3 A;  2PB6 A;  2NPN A;  3FFY A;  2CBF A;  4MUY A;  2EK4 A;  1PJQ A;  2DV3 A;  2HUQ A;  3KWP A;  2ZVC A;  3T0G A;  2E0N A;  2P6I A;  3SZU A;  2QBU A;  2EN5 A;  2PCH A;  3ZGL A;  2DXV A;  1WDE A;  3FQ6 A;  2PCG A;  2E16 A;  2ED5 A;  2EK7 A;  3NUT A;  1WNG A;  2ED3 A;  2EMU A;  2PCI A;  2DV5 A;  2OWG A;  2EGL A;  2E07 A;  1S4D A;  2EK2 A;  1VHV A;  2P2X A;  2E4R A;  2P5C A;  3KE8 A;  3HH1 A;  2EJJ A;  2EL1 A;  4MV5 A;  2PCA A;  1VA0 A;  2OWK A;  2DSH A;  2EEQ A;  3ND1 A;  2EJZ A;  4H4E A;  2KYY A;  2P5F A;  2EH5 A;  2E7R A;  2DV7 A;  2EH4 A;  2ENI A;  1PJT A;  2YBO A;  3TIX B;  2EHC A;  2ZVB A;  3URK A;  2DSG A;  2EGS A;  4E16 A;  4MUX A;  3UV6 A;  2HUX A;  3KEL A;  2E8Q A;  3NDC A;  3T0F A;  2E8H A;  2DXW A;  3UTD A;  1VE2 A;  2HUV A;  2EGB A;  3KE9 A;  2EL2 A;  2EL3 A;  3I4T A;  2YBQ A;  2PCM A;  2E17 A;  3SZO A;  3KEF A;  2OWF A;  3DNF A;  2DXX A;  2OWU A;  4N7B A;  4H4D A;  2EHL A;  2OWV A;  2P6K A;  2HR8 A;  3UV7 A;  3F7T A;  2EMR A;  4MV0 A;  3UV3 A;  1CBF A;  1VCE A;  3LMM A;  2P9D A;  2E0K A;  2P6L A;  2EH2 A;  2DEK A;  2EK3 A;  2HUT A;  2E8R A;  2ELE A;  2EJK A;  4EB3 A;  2P6D A;  2PCK A;  1WYZ A;  2E08 A;  2E8S A;  3KEM A;  3ZGN A;  2PB4 A;  4H4C A;  1PJS A;  2DSI A;  2E4N A;  2PB5 A;  5HW4 A;  2ELD A;  3UTC A;  1V9A A;  3SZL A;  2DV4 A;  2EL0 A;  2Z6R A;  3UWM A;  3NEI A;  2EKA A;  2E15 A; 
#chains in the Genus database with same CATH homology
 2BB3 A;  2PB6 A;  2NPN A;  3FFY A;  2CBF A;  4MUY A;  2EK4 A;  1PJQ A;  2DV3 A;  2HUQ A;  3KWP A;  2ZVC A;  3T0G A;  2E0N A;  2P6I A;  3SZU A;  2QBU A;  2EN5 A;  2PCH A;  3ZGL A;  2DXV A;  1WDE A;  3FQ6 A;  2PCG A;  2E16 A;  2ED5 A;  2EK7 A;  3NUT A;  1WNG A;  2ED3 A;  2EMU A;  2PCI A;  2DV5 A;  2OWG A;  2EGL A;  2E07 A;  1S4D A;  2EK2 A;  1VHV A;  2P2X A;  2E4R A;  2P5C A;  3KE8 A;  3HH1 A;  2EJJ A;  2EL1 A;  4MV5 A;  2PCA A;  1VA0 A;  2OWK A;  2DSH A;  2EEQ A;  3ND1 A;  2EJZ A;  4H4E A;  2KYY A;  2P5F A;  2EH5 A;  2E7R A;  2DV7 A;  2EH4 A;  2ENI A;  1PJT A;  2YBO A;  3TIX B;  2EHC A;  2ZVB A;  3URK A;  2DSG A;  2EGS A;  4E16 A;  4MUX A;  3UV6 A;  2HUX A;  3KEL A;  2E8Q A;  3NDC A;  3T0F A;  2E8H A;  2DXW A;  3UTD A;  1VE2 A;  2HUV A;  2EGB A;  3KE9 A;  2EL2 A;  2EL3 A;  3I4T A;  2YBQ A;  2PCM A;  2E17 A;  3SZO A;  3KEF A;  2OWF A;  3DNF A;  2DXX A;  2OWU A;  4N7B A;  4H4D A;  2EHL A;  2OWV A;  2P6K A;  2HR8 A;  3UV7 A;  3F7T A;  2EMR A;  4MV0 A;  3UV3 A;  1CBF A;  1VCE A;  3LMM A;  2P9D A;  2E0K A;  2P6L A;  2EH2 A;  2DEK A;  2EK3 A;  2HUT A;  2E8R A;  2ELE A;  2EJK A;  4EB3 A;  2P6D A;  2PCK A;  1WYZ A;  2E08 A;  2E8S A;  3KEM A;  3ZGN A;  2PB4 A;  4H4C A;  1PJS A;  2DSI A;  2E4N A;  2PB5 A;  5HW4 A;  2ELD A;  3UTC A;  1V9A A;  3SZL A;  2DV4 A;  2EL0 A;  2Z6R A;  3UWM A;  3NEI A;  2EKA A;  2E15 A; 
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