The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
289
|
structure length |
289
|
Chain Sequence |
EAVTLLLVGWGYAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQRRPLEYDRSVYETVEENCKKGVYMEPV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb |
| molecule keywords |
Probable diphthine synthase
|
| molecule tags |
Transferase
|
| source organism |
Aeropyrum pernix
|
| total genus |
91
|
| structure length |
289
|
| sequence length |
289
|
| ec nomenclature |
ec
2.1.1.98: Diphthine synthase. |
| pdb deposition date | 2004-05-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00590 | TP_methylase | Tetrapyrrole (Corrin/Porphyrin) Methylases |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 | Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase; domain 1 | Cobalt-precorrin-4 Transmethylase; Domain 1 |
#chains in the Genus database with same CATH superfamily 2E4R A; 2EEQ A; 2PCH A; 2ZVB A; 3ND1 A; 2OWF A; 2PCI A; 2YBQ A; 2ED3 A; 2E4N A; 2E08 A; 2E8Q A; 2EH2 A; 2ELE A; 2PB4 A; 3NDC A; 2HUT A; 2HR8 A; 2DV3 A; 2EGB A; 2EKA A; 2OWK A; 2EJK A; 2P6K A; 2OWU A; 2QBU A; 2HUX A; 1PJQ A; 2CBF A; 2PB5 A; 1WYZ A; 2DV7 A; 2PCG A; 2E07 A; 2DV4 A; 4E16 A; 2DSG A; 2DXV A; 2E8R A; 2YBO A; 3I4T A; 1PJS A; 5HW4 A; 2E7R A; 2EJJ A; 1V9A A; 2EL3 A; 2DXW A; 2EK4 A; 2ELD A; 2E16 A; 2E17 A; 2E8S A; 2EGL A; 2HUV A; 2BB3 A; 2EL0 A; 2ENI A; 2EK7 A; 2EL1 A; 2PCK A; 1S4D A; 2ED5 A; 2NPN A; 2P5F A; 2P5C A; 2EHC A; 2PCA A; 2E0K A; 2DV5 A; 2P6I A; 1VA0 A; 2HUQ A; 2DXX A; 2E8H A; 2EL2 A; 2EMU A; 2DSI A; 3FFY A; 2EJZ A; 2E15 A; 3FQ6 A; 2EMR A; 3HH1 A; 2EH4 A; 2P6L A; 3KWP A; 2EHL A; 2EK2 A; 2P9D A; 2EH5 A; 1VHV A; 2Z6R A; 2EGS A; 2PCM A; 1WDE A; 3NEI A; 1VE2 A; 1PJT A; 2E0N A; 2ZVC A; 2PB6 A; 1CBF A; 1WNG A; 1VCE A; 2DSH A; 2P6D A; 2OWV A; 2P2X A; 2EN5 A; 2EK3 A; 2OWG A; 3NUT A; 2DEK A; #chains in the Genus database with same CATH topology 4MV0 A; 2E4R A; 2EEQ A; 2PCH A; 2ZVB A; 3ND1 A; 2OWF A; 4MUY A; 3UWM A; 2PCI A; 2YBQ A; 2ED3 A; 3KEM A; 2E4N A; 2E08 A; 2E8Q A; 3KE9 A; 3KEF A; 2EH2 A; 2ELE A; 2PB4 A; 2KYY A; 2HUT A; 2HR8 A; 3NDC A; 2DV3 A; 2EGB A; 3T0F A; 2EKA A; 2OWK A; 2EJK A; 2P6K A; 2OWU A; 2QBU A; 2HUX A; 1PJQ A; 2CBF A; 2PB5 A; 3UV6 A; 3ZGL A; 1WYZ A; 2DV7 A; 2PCG A; 3T0G A; 2E07 A; 2DV4 A; 4E16 A; 2DSG A; 2DXV A; 2E8R A; 2YBO A; 4N7B A; 3I4T A; 1PJS A; 5HW4 A; 3KE8 A; 2E7R A; 2EJJ A; 1V9A A; 3SZO A; 4H4C A; 2EL3 A; 2DXW A; 2EK4 A; 2ELD A; 3DNF A; 2E16 A; 2E17 A; 2E8S A; 2EGL A; 2HUV A; 3SZL A; 2BB3 A; 2EL0 A; 2ENI A; 2EK7 A; 2EL1 A; 2PCK A; 1S4D A; 2ED5 A; 3UV7 A; 2NPN A; 2P5F A; 2P5C A; 2EHC A; 2PCA A; 3KEL A; 3UV3 A; 2E0K A; 2DV5 A; 2P6I A; 1VA0 A; 2HUQ A; 2DXX A; 2E8H A; 2EL2 A; 2EMU A; 2DSI A; 3FFY A; 2EJZ A; 2E15 A; 3SZU A; 3FQ6 A; 4EB3 A; 2EMR A; 3HH1 A; 3TIX B; 3ZGN A; 4H4D A; 2EH4 A; 2P6L A; 3KWP A; 3LMM A; 4H4E A; 2EHL A; 3UTC A; 3F7T A; 2EK2 A; 2P9D A; 2EH5 A; 1VHV A; 2Z6R A; 2EGS A; 2PCM A; 1WDE A; 3NEI A; 1VE2 A; 1PJT A; 2E0N A; 2ZVC A; 2PB6 A; 1CBF A; 1WNG A; 1VCE A; 2DSH A; 4MV5 A; 4MUX A; 2P6D A; 3URK A; 3UTD A; 2OWV A; 2P2X A; 2EN5 A; 2EK3 A; 2OWG A; 3NUT A; 2DEK A; #chains in the Genus database with same CATH homology 4MV0 A; 2E4R A; 2EEQ A; 2PCH A; 2ZVB A; 3ND1 A; 2OWF A; 4MUY A; 3UWM A; 2PCI A; 2YBQ A; 2ED3 A; 3KEM A; 2E4N A; 2E08 A; 2E8Q A; 3KE9 A; 3KEF A; 2EH2 A; 2ELE A; 2PB4 A; 2KYY A; 2HUT A; 2HR8 A; 3NDC A; 2DV3 A; 2EGB A; 3T0F A; 2EKA A; 2OWK A; 2EJK A; 2P6K A; 2OWU A; 2QBU A; 2HUX A; 1PJQ A; 2CBF A; 2PB5 A; 3UV6 A; 3ZGL A; 1WYZ A; 2DV7 A; 2PCG A; 3T0G A; 2E07 A; 2DV4 A; 4E16 A; 2DSG A; 2DXV A; 2E8R A; 2YBO A; 4N7B A; 3I4T A; 1PJS A; 5HW4 A; 3KE8 A; 2E7R A; 2EJJ A; 1V9A A; 3SZO A; 4H4C A; 2EL3 A; 2DXW A; 2EK4 A; 2ELD A; 3DNF A; 2E16 A; 2E17 A; 2E8S A; 2EGL A; 2HUV A; 3SZL A; 2BB3 A; 2EL0 A; 2ENI A; 2EK7 A; 2EL1 A; 2PCK A; 1S4D A; 2ED5 A; 3UV7 A; 2NPN A; 2P5F A; 2P5C A; 2EHC A; 2PCA A; 3KEL A; 3UV3 A; 2E0K A; 2DV5 A; 2P6I A; 1VA0 A; 2HUQ A; 2DXX A; 2E8H A; 2EL2 A; 2EMU A; 2DSI A; 3FFY A; 2EJZ A; 2E15 A; 3SZU A; 3FQ6 A; 4EB3 A; 2EMR A; 3HH1 A; 3TIX B; 3ZGN A; 4H4D A; 2EH4 A; 2P6L A; 3KWP A; 3LMM A; 4H4E A; 2EHL A; 3UTC A; 3F7T A; 2EK2 A; 2P9D A; 2EH5 A; 1VHV A; 2Z6R A; 2EGS A; 2PCM A; 1WDE A; 3NEI A; 1VE2 A; 1PJT A; 2E0N A; 2ZVC A; 2PB6 A; 1CBF A; 1WNG A; 1VCE A; 2DSH A; 4MV5 A; 4MUX A; 2P6D A; 3URK A; 3UTD A; 2OWV A; 2P2X A; 2EN5 A; 2EK3 A; 2OWG A; 3NUT A; 2DEK A;
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