2BB3A

Crystal structure of cobalamin biosynthesis precorrin-6y methylase (cbie) from archaeoglobus fulgidus
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
198
structure length
194
Chain Sequence
SGHMIWIVGSGTCRGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCFDAELTELLKYRHLLILADSHFPLERLGKRRVVLLENLCMEGERIREGNADSIELESDYTIIFVEREV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (69-73)S5 (95-98)TII1 (10-13)TIV1 (73-76)AH1 (16-24)S3 (46-48)TVIII1 (25-28)O1 (10-166)S2 (27-30)TI1 (40-43)TI2 (43-46)AH3 (54-66)AH4 (82-88)TIV2 (74-77)AH5 (103-111)TIV5 (162-165)3H1 (115-117)S6 (118-122)3H2 (135-137)S7 (140-145)AH6 (129-134)S10 (187-191)TIV7 (184-187)TI5 (177-180)TI3 (146-149)3H3 (152-154)S9 (171-176)TII'1 (154-157)S8 (158-163)TI4 (176-179)TIV6 (166-170)S1 (2-6)TIV4 (91-94)AH2 (32-38)Updating...
connected with : NaN
molecule tags Transferase
source organism Archaeoglobus fulgidus
publication title Crystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
rcsb
molecule keywords cobalamin biosynthesis precorrin-6Y methylase (cbiE)
total genus 46
structure length 194
sequence length 198
chains with identical sequence B
ec nomenclature ec 2.1.1.-:
pdb deposition date 2005-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2bb3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2bb3A01
2EHLA 2EK4A 2E8RA 2PB6A 2ED3A 3FQ6A 2OWGA 2QBUA 2E16A 2PCAA 2P6DA 2CBFA 3NUTA 2E4RA 1PJSA 2DV5A 2PCMA 2E7RA 1VA0A 2E15A 1VCEA 2PCIA 1V9AA 2EK2A 2EJKA 2EH5A 2ELEA 1WNGA 2YBQA 2E8QA 2EN5A 2EEQA 2OWKA 2ZVBA 2EGBA 2DV4A 2DSHA 5HW4A 3KWPA 2E0NA 4E16A 2P9DA 2PCHA 1S4DA 1CBFA 2E17A 1VE2A 1PJTA 2DXWA 2EH4A 2EJJA 2EMRA 2HR8A 2P6KA 2EL3A 2EK7A 2HUVA 2HUTA 2EGSA 2PB5A 2DSIA 1VHVA 2EL2A 2HUXA 2DXXA 3NDCA 2ENIA 3I4TA 2P6IA 2P2XA 2EL0A 2NPNA 2DEKA 2P5CA 2EHCA 2DXVA 2P6LA 2E08A 2YBOA 2ELDA 2EK3A 2DV7A 2E0KA 2EKAA 1PJQA 2ED5A 2E8SA 3FFYA 3ND1A 2HUQA 1WDEA 2DV3A 2OWUA 2EL1A 1WYZA 2PCKA 2DSGA 2P5FA 2EH2A 2OWVA 2EJZA 2PCGA 3NEIA 2ZVCA 2BB3A 2Z6RA 2EMUA 2E07A 2E8HA 2EGLA 2E4NA 2PB4A 3HH1A 2OWFA
chains in the Genus database with same CATH superfamily
2EHLA 2EK4A 2E8RA 3KEMA 2PB6A 2ED3A 3FQ6A 2OWGA 2QBUA 2E16A 2PCAA 3KEFA 2P6DA 4MUYA 2CBFA 3SZLA 3NUTA 2E4RA 1PJSA 2DV5A 2PCMA 3LMMA 4EB3A 2E7RA 4MUXA 1VA0A 2E15A 1VCEA 2PCIA 1V9AA 3F7TA 3KE8A 2EK2A 4N7BA 2EJKA 2EH5A 2ELEA 1WNGA 2YBQA 2E8QA 2EN5A 2EEQA 2OWKA 2ZVBA 2EGBA 3DNFA 2DV4A 3UV6A 2DSHA 5HW4A 3KWPA 2E0NA 4E16A 2P9DA 2PCHA 1S4DA 3KELA 2KYYA 1CBFA 2E17A 1VE2A 1PJTA 2DXWA 2EH4A 2EJJA 3T0GA 2EMRA 4MV0A 3ZGNA 2HR8A 3UWMA 2P6KA 2EL3A 2EK7A 2HUVA 4H4EA 2HUTA 2EGSA 3KE9A 2PB5A 2DSIA 3URKA 1VHVA 4H4CA 2EL2A 2HUXA 2DXXA 3NDCA 3SZOA 2ENIA 3I4TA 3UTDA 3UTCA 2P6IA 2P2XA 2EL0A 2NPNA 3TIXB 2DEKA 2P5CA 2EHCA 3ZGLA 2DXVA 2P6LA 2E08A 2YBOA 2ELDA 2EK3A 3UV7A 2DV7A 2E0KA 3UV3A 2EKAA 1PJQA 2ED5A 2E8SA 3FFYA 3ND1A 2HUQA 1WDEA 2DV3A 4MV5A 2OWUA 2EL1A 1WYZA 2PCKA 2DSGA 2P5FA 2EH2A 2OWVA 2EJZA 2PCGA 3NEIA 2ZVCA 2BB3A 2Z6RA 2EMUA 3T0FA 2E07A 4H4DA 2E8HA 2EGLA 2E4NA 2PB4A 3HH1A 3SZUA 2OWFA
chains in the Genus database with same CATH topology
2EHLA 2EK4A 2E8RA 3KEMA 2PB6A 2ED3A 3FQ6A 2OWGA 2QBUA 2E16A 2PCAA 3KEFA 2P6DA 4MUYA 2CBFA 3SZLA 3NUTA 2E4RA 1PJSA 2DV5A 2PCMA 3LMMA 4EB3A 2E7RA 4MUXA 1VA0A 2E15A 1VCEA 2PCIA 1V9AA 3F7TA 3KE8A 2EK2A 4N7BA 2EJKA 2EH5A 2ELEA 1WNGA 2YBQA 2E8QA 2EN5A 2EEQA 2OWKA 2ZVBA 2EGBA 3DNFA 2DV4A 3UV6A 2DSHA 5HW4A 3KWPA 2E0NA 4E16A 2P9DA 2PCHA 1S4DA 3KELA 2KYYA 1CBFA 2E17A 1VE2A 1PJTA 2DXWA 2EH4A 2EJJA 3T0GA 2EMRA 4MV0A 3ZGNA 2HR8A 3UWMA 2P6KA 2EL3A 2EK7A 2HUVA 4H4EA 2HUTA 2EGSA 3KE9A 2PB5A 2DSIA 3URKA 1VHVA 4H4CA 2EL2A 2HUXA 2DXXA 3NDCA 3SZOA 2ENIA 3I4TA 3UTDA 3UTCA 2P6IA 2P2XA 2EL0A 2NPNA 3TIXB 2DEKA 2P5CA 2EHCA 3ZGLA 2DXVA 2P6LA 2E08A 2YBOA 2ELDA 2EK3A 3UV7A 2DV7A 2E0KA 3UV3A 2EKAA 1PJQA 2ED5A 2E8SA 3FFYA 3ND1A 2HUQA 1WDEA 2DV3A 4MV5A 2OWUA 2EL1A 1WYZA 2PCKA 2DSGA 2P5FA 2EH2A 2OWVA 2EJZA 2PCGA 3NEIA 2ZVCA 2BB3A 2Z6RA 2EMUA 3T0FA 2E07A 4H4DA 2E8HA 2EGLA 2E4NA 2PB4A 3HH1A 3SZUA 2OWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EHL A;  2EK4 A;  2E8R A;  2PB6 A;  2ED3 A;  3FQ6 A;  2OWG A;  2QBU A;  2E16 A;  2PCA A;  2P6D A;  2CBF A;  3NUT A;  2E4R A;  1PJS A;  2DV5 A;  2PCM A;  2E7R A;  1VA0 A;  2E15 A;  1VCE A;  2PCI A;  1V9A A;  2EK2 A;  2EJK A;  2EH5 A;  2ELE A;  1WNG A;  2YBQ A;  2E8Q A;  2EN5 A;  2EEQ A;  2OWK A;  2ZVB A;  2EGB A;  2DV4 A;  2DSH A;  5HW4 A;  3KWP A;  2E0N A;  4E16 A;  2P9D A;  2PCH A;  1S4D A;  1CBF A;  2E17 A;  1VE2 A;  1PJT A;  2DXW A;  2EH4 A;  2EJJ A;  2EMR A;  2HR8 A;  2P6K A;  2EL3 A;  2EK7 A;  2HUV A;  2HUT A;  2EGS A;  2PB5 A;  2DSI A;  1VHV A;  2EL2 A;  2HUX A;  2DXX A;  3NDC A;  2ENI A;  3I4T A;  2P6I A;  2P2X A;  2EL0 A;  2NPN A;  2DEK A;  2P5C A;  2EHC A;  2DXV A;  2P6L A;  2E08 A;  2YBO A;  2ELD A;  2EK3 A;  2DV7 A;  2E0K A;  2EKA A;  1PJQ A;  2ED5 A;  2E8S A;  3FFY A;  3ND1 A;  2HUQ A;  1WDE A;  2DV3 A;  2OWU A;  2EL1 A;  1WYZ A;  2PCK A;  2DSG A;  2P5F A;  2EH2 A;  2OWV A;  2EJZ A;  2PCG A;  3NEI A;  2ZVC A;  2BB3 A;  2Z6R A;  2EMU A;  2E07 A;  2E8H A;  2EGL A;  2E4N A;  2PB4 A;  3HH1 A;  2OWF A; 
#chains in the Genus database with same CATH topology
 2EHL A;  2EK4 A;  2E8R A;  3KEM A;  2PB6 A;  2ED3 A;  3FQ6 A;  2OWG A;  2QBU A;  2E16 A;  2PCA A;  3KEF A;  2P6D A;  4MUY A;  2CBF A;  3SZL A;  3NUT A;  2E4R A;  1PJS A;  2DV5 A;  2PCM A;  3LMM A;  4EB3 A;  2E7R A;  4MUX A;  1VA0 A;  2E15 A;  1VCE A;  2PCI A;  1V9A A;  3F7T A;  3KE8 A;  2EK2 A;  4N7B A;  2EJK A;  2EH5 A;  2ELE A;  1WNG A;  2YBQ A;  2E8Q A;  2EN5 A;  2EEQ A;  2OWK A;  2ZVB A;  2EGB A;  3DNF A;  2DV4 A;  3UV6 A;  2DSH A;  5HW4 A;  3KWP A;  2E0N A;  4E16 A;  2P9D A;  2PCH A;  1S4D A;  3KEL A;  2KYY A;  1CBF A;  2E17 A;  1VE2 A;  1PJT A;  2DXW A;  2EH4 A;  2EJJ A;  3T0G A;  2EMR A;  4MV0 A;  3ZGN A;  2HR8 A;  3UWM A;  2P6K A;  2EL3 A;  2EK7 A;  2HUV A;  4H4E A;  2HUT A;  2EGS A;  3KE9 A;  2PB5 A;  2DSI A;  3URK A;  1VHV A;  4H4C A;  2EL2 A;  2HUX A;  2DXX A;  3NDC A;  3SZO A;  2ENI A;  3I4T A;  3UTD A;  3UTC A;  2P6I A;  2P2X A;  2EL0 A;  2NPN A;  3TIX B;  2DEK A;  2P5C A;  2EHC A;  3ZGL A;  2DXV A;  2P6L A;  2E08 A;  2YBO A;  2ELD A;  2EK3 A;  3UV7 A;  2DV7 A;  2E0K A;  3UV3 A;  2EKA A;  1PJQ A;  2ED5 A;  2E8S A;  3FFY A;  3ND1 A;  2HUQ A;  1WDE A;  2DV3 A;  4MV5 A;  2OWU A;  2EL1 A;  1WYZ A;  2PCK A;  2DSG A;  2P5F A;  2EH2 A;  2OWV A;  2EJZ A;  2PCG A;  3NEI A;  2ZVC A;  2BB3 A;  2Z6R A;  2EMU A;  3T0F A;  2E07 A;  4H4D A;  2E8H A;  2EGL A;  2E4N A;  2PB4 A;  3HH1 A;  3SZU A;  2OWF A; 
#chains in the Genus database with same CATH homology
 2EHL A;  2EK4 A;  2E8R A;  3KEM A;  2PB6 A;  2ED3 A;  3FQ6 A;  2OWG A;  2QBU A;  2E16 A;  2PCA A;  3KEF A;  2P6D A;  4MUY A;  2CBF A;  3SZL A;  3NUT A;  2E4R A;  1PJS A;  2DV5 A;  2PCM A;  3LMM A;  4EB3 A;  2E7R A;  4MUX A;  1VA0 A;  2E15 A;  1VCE A;  2PCI A;  1V9A A;  3F7T A;  3KE8 A;  2EK2 A;  4N7B A;  2EJK A;  2EH5 A;  2ELE A;  1WNG A;  2YBQ A;  2E8Q A;  2EN5 A;  2EEQ A;  2OWK A;  2ZVB A;  2EGB A;  3DNF A;  2DV4 A;  3UV6 A;  2DSH A;  5HW4 A;  3KWP A;  2E0N A;  4E16 A;  2P9D A;  2PCH A;  1S4D A;  3KEL A;  2KYY A;  1CBF A;  2E17 A;  1VE2 A;  1PJT A;  2DXW A;  2EH4 A;  2EJJ A;  3T0G A;  2EMR A;  4MV0 A;  3ZGN A;  2HR8 A;  3UWM A;  2P6K A;  2EL3 A;  2EK7 A;  2HUV A;  4H4E A;  2HUT A;  2EGS A;  3KE9 A;  2PB5 A;  2DSI A;  3URK A;  1VHV A;  4H4C A;  2EL2 A;  2HUX A;  2DXX A;  3NDC A;  3SZO A;  2ENI A;  3I4T A;  3UTD A;  3UTC A;  2P6I A;  2P2X A;  2EL0 A;  2NPN A;  3TIX B;  2DEK A;  2P5C A;  2EHC A;  3ZGL A;  2DXV A;  2P6L A;  2E08 A;  2YBO A;  2ELD A;  2EK3 A;  3UV7 A;  2DV7 A;  2E0K A;  3UV3 A;  2EKA A;  1PJQ A;  2ED5 A;  2E8S A;  3FFY A;  3ND1 A;  2HUQ A;  1WDE A;  2DV3 A;  4MV5 A;  2OWU A;  2EL1 A;  1WYZ A;  2PCK A;  2DSG A;  2P5F A;  2EH2 A;  2OWV A;  2EJZ A;  2PCG A;  3NEI A;  2ZVC A;  2BB3 A;  2Z6R A;  2EMU A;  3T0F A;  2E07 A;  4H4D A;  2E8H A;  2EGL A;  2E4N A;  2PB4 A;  3HH1 A;  3SZU A;  2OWF A; 
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