2DXWA

Crystal structure of glu54 to lys mutant of diphthine synthase
Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKKIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)S4 (79-84)TI1 (12-15)TI3 (39-42)TVIII1 (27-30)AH4 (94-104)S2 (29-33)3H1 (72-76)TIV2 (85-88)TIV3 (89-92)S5 (107-111)3H2 (120-123)AH9 (244-254)3H3 (127-129)S6 (130-136)S7 (161-166)AH6 (146-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)S9 (174-175)3H4 (170-172)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H5 (258-261)AH1 (18-26)TIV1 (34-37)AH3 (60-71)TI4 (87-90)TI5 (198-201)TVIII2 (195-198)S10 (202-207)O1 (261-263)S3 (56-58)AH5 (116-119)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dxwA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dxwA01
2DV3A 3FQ6A 2EEQA 1VE2A 2BB3A 4E16A 2CBFA 1PJTA 2EH5A 2DV5A 1PJQA 1V9AA 2PCGA 2DV4A 2ZVCA 2HUXA 2EK2A 2PCIA 2E08A 2EH4A 3KWPA 2YBOA 2OWVA 2P6DA 2E07A 2OWKA 1VA0A 2HUVA 2P5CA 3HH1A 2E15A 2DSIA 2YBQA 2PCMA 2EK3A 2DSGA 2QBUA 2ELDA 2E0KA 2ENIA 1WDEA 2E0NA 2EJZA 3FFYA 2EHCA 2E8SA 2P6KA 2ELEA 2P6IA 2E16A 2E8QA 2EMUA 2ED3A 3NUTA 2EK7A 2P5FA 2E4RA 2E8HA 2ED5A 1PJSA 2HUQA 2PB6A 2PCHA 2EGBA 2PB4A 2EJKA 2DXWA 2HUTA 3I4TA 1WYZA 2HR8A 2E8RA 2EN5A 1CBFA 2EL0A 2EL2A 2P2XA 3NDCA 3ND1A 2PCKA 2EK4A 2EHLA 1WNGA 3NEIA 2PCAA 2EGSA 2E7RA 2EMRA 2EL1A 2ZVBA 2DXVA 2PB5A 5HW4A 2DSHA 2DEKA 2EKAA 2DV7A 2EGLA 2OWGA 2OWUA 2OWFA 2EH2A 2E17A 2DXXA 1VCEA 2E4NA 2Z6RA 2EL3A 1VHVA 2NPNA 2EJJA 1S4DA 2P6LA 2P9DA
chains in the Genus database with same CATH superfamily
3LMMA 2DV3A 3FQ6A 2EEQA 1VE2A 2BB3A 4E16A 2CBFA 1PJTA 2EH5A 2DV5A 1PJQA 1V9AA 2PCGA 2DV4A 3ZGNA 3SZUA 2ZVCA 2HUXA 2EK2A 2PCIA 2E08A 3UTDA 2EH4A 3KWPA 3DNFA 4H4DA 2YBOA 2OWVA 2P6DA 2E07A 2OWKA 3TIXB 1VA0A 2HUVA 4MUYA 2P5CA 3URKA 3HH1A 2E15A 2DSIA 2YBQA 2PCMA 3UV6A 4MV0A 2EK3A 2DSGA 2QBUA 3F7TA 2ELDA 2E0KA 2ENIA 3SZOA 1WDEA 3UV3A 2E0NA 2EJZA 3FFYA 2EHCA 2E8SA 2P6KA 2ELEA 2P6IA 2E16A 2E8QA 3UV7A 2EMUA 2ED3A 3NUTA 2EK7A 2P5FA 2E4RA 4H4CA 2E8HA 2ED5A 1PJSA 2HUQA 2PB6A 4N7BA 2PCHA 2EGBA 2PB4A 2EJKA 2DXWA 2HUTA 3KE9A 3KEMA 3SZLA 3I4TA 1WYZA 2HR8A 2E8RA 2EN5A 1CBFA 2EL0A 2EL2A 2P2XA 3NDCA 3ND1A 2PCKA 2EK4A 2EHLA 2KYYA 1WNGA 3T0FA 3NEIA 3KELA 2PCAA 4EB3A 2EGSA 2E7RA 2EMRA 2EL1A 2ZVBA 3ZGLA 2DXVA 2PB5A 5HW4A 2DSHA 4H4EA 2DEKA 2EKAA 3KE8A 2DV7A 3KEFA 2EGLA 2OWGA 2OWUA 4MV5A 2OWFA 3UWMA 2EH2A 2E17A 3T0GA 2DXXA 1VCEA 2E4NA 2Z6RA 2EL3A 1VHVA 2NPNA 2EJJA 1S4DA 2P6LA 3UTCA 2P9DA 4MUXA
chains in the Genus database with same CATH topology
3LMMA 2DV3A 3FQ6A 2EEQA 1VE2A 2BB3A 4E16A 2CBFA 1PJTA 2EH5A 2DV5A 1PJQA 1V9AA 2PCGA 2DV4A 3ZGNA 3SZUA 2ZVCA 2HUXA 2EK2A 2PCIA 2E08A 3UTDA 2EH4A 3KWPA 3DNFA 4H4DA 2YBOA 2OWVA 2P6DA 2E07A 2OWKA 3TIXB 1VA0A 2HUVA 4MUYA 2P5CA 3URKA 3HH1A 2E15A 2DSIA 2YBQA 2PCMA 3UV6A 4MV0A 2EK3A 2DSGA 2QBUA 3F7TA 2ELDA 2E0KA 2ENIA 3SZOA 1WDEA 3UV3A 2E0NA 2EJZA 3FFYA 2EHCA 2E8SA 2P6KA 2ELEA 2P6IA 2E16A 2E8QA 3UV7A 2EMUA 2ED3A 3NUTA 2EK7A 2P5FA 2E4RA 4H4CA 2E8HA 2ED5A 1PJSA 2HUQA 2PB6A 4N7BA 2PCHA 2EGBA 2PB4A 2EJKA 2DXWA 2HUTA 3KE9A 3KEMA 3SZLA 3I4TA 1WYZA 2HR8A 2E8RA 2EN5A 1CBFA 2EL0A 2EL2A 2P2XA 3NDCA 3ND1A 2PCKA 2EK4A 2EHLA 2KYYA 1WNGA 3T0FA 3NEIA 3KELA 2PCAA 4EB3A 2EGSA 2E7RA 2EMRA 2EL1A 2ZVBA 3ZGLA 2DXVA 2PB5A 5HW4A 2DSHA 4H4EA 2DEKA 2EKAA 3KE8A 2DV7A 3KEFA 2EGLA 2OWGA 2OWUA 4MV5A 2OWFA 3UWMA 2EH2A 2E17A 3T0GA 2DXXA 1VCEA 2E4NA 2Z6RA 2EL3A 1VHVA 2NPNA 2EJJA 1S4DA 2P6LA 3UTCA 2P9DA 4MUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV3 A;  3FQ6 A;  2EEQ A;  1VE2 A;  2BB3 A;  4E16 A;  2CBF A;  1PJT A;  2EH5 A;  2DV5 A;  1PJQ A;  1V9A A;  2PCG A;  2DV4 A;  2ZVC A;  2HUX A;  2EK2 A;  2PCI A;  2E08 A;  2EH4 A;  3KWP A;  2YBO A;  2OWV A;  2P6D A;  2E07 A;  2OWK A;  1VA0 A;  2HUV A;  2P5C A;  3HH1 A;  2E15 A;  2DSI A;  2YBQ A;  2PCM A;  2EK3 A;  2DSG A;  2QBU A;  2ELD A;  2E0K A;  2ENI A;  1WDE A;  2E0N A;  2EJZ A;  3FFY A;  2EHC A;  2E8S A;  2P6K A;  2ELE A;  2P6I A;  2E16 A;  2E8Q A;  2EMU A;  2ED3 A;  3NUT A;  2EK7 A;  2P5F A;  2E4R A;  2E8H A;  2ED5 A;  1PJS A;  2HUQ A;  2PB6 A;  2PCH A;  2EGB A;  2PB4 A;  2EJK A;  2DXW A;  2HUT A;  3I4T A;  1WYZ A;  2HR8 A;  2E8R A;  2EN5 A;  1CBF A;  2EL0 A;  2EL2 A;  2P2X A;  3NDC A;  3ND1 A;  2PCK A;  2EK4 A;  2EHL A;  1WNG A;  3NEI A;  2PCA A;  2EGS A;  2E7R A;  2EMR A;  2EL1 A;  2ZVB A;  2DXV A;  2PB5 A;  5HW4 A;  2DSH A;  2DEK A;  2EKA A;  2DV7 A;  2EGL A;  2OWG A;  2OWU A;  2OWF A;  2EH2 A;  2E17 A;  2DXX A;  1VCE A;  2E4N A;  2Z6R A;  2EL3 A;  1VHV A;  2NPN A;  2EJJ A;  1S4D A;  2P6L A;  2P9D A; 
#chains in the Genus database with same CATH topology
 3LMM A;  2DV3 A;  3FQ6 A;  2EEQ A;  1VE2 A;  2BB3 A;  4E16 A;  2CBF A;  1PJT A;  2EH5 A;  2DV5 A;  1PJQ A;  1V9A A;  2PCG A;  2DV4 A;  3ZGN A;  3SZU A;  2ZVC A;  2HUX A;  2EK2 A;  2PCI A;  2E08 A;  3UTD A;  2EH4 A;  3KWP A;  3DNF A;  4H4D A;  2YBO A;  2OWV A;  2P6D A;  2E07 A;  2OWK A;  3TIX B;  1VA0 A;  2HUV A;  4MUY A;  2P5C A;  3URK A;  3HH1 A;  2E15 A;  2DSI A;  2YBQ A;  2PCM A;  3UV6 A;  4MV0 A;  2EK3 A;  2DSG A;  2QBU A;  3F7T A;  2ELD A;  2E0K A;  2ENI A;  3SZO A;  1WDE A;  3UV3 A;  2E0N A;  2EJZ A;  3FFY A;  2EHC A;  2E8S A;  2P6K A;  2ELE A;  2P6I A;  2E16 A;  2E8Q A;  3UV7 A;  2EMU A;  2ED3 A;  3NUT A;  2EK7 A;  2P5F A;  2E4R A;  4H4C A;  2E8H A;  2ED5 A;  1PJS A;  2HUQ A;  2PB6 A;  4N7B A;  2PCH A;  2EGB A;  2PB4 A;  2EJK A;  2DXW A;  2HUT A;  3KE9 A;  3KEM A;  3SZL A;  3I4T A;  1WYZ A;  2HR8 A;  2E8R A;  2EN5 A;  1CBF A;  2EL0 A;  2EL2 A;  2P2X A;  3NDC A;  3ND1 A;  2PCK A;  2EK4 A;  2EHL A;  2KYY A;  1WNG A;  3T0F A;  3NEI A;  3KEL A;  2PCA A;  4EB3 A;  2EGS A;  2E7R A;  2EMR A;  2EL1 A;  2ZVB A;  3ZGL A;  2DXV A;  2PB5 A;  5HW4 A;  2DSH A;  4H4E A;  2DEK A;  2EKA A;  3KE8 A;  2DV7 A;  3KEF A;  2EGL A;  2OWG A;  2OWU A;  4MV5 A;  2OWF A;  3UWM A;  2EH2 A;  2E17 A;  3T0G A;  2DXX A;  1VCE A;  2E4N A;  2Z6R A;  2EL3 A;  1VHV A;  2NPN A;  2EJJ A;  1S4D A;  2P6L A;  3UTC A;  2P9D A;  4MUX A; 
#chains in the Genus database with same CATH homology
 3LMM A;  2DV3 A;  3FQ6 A;  2EEQ A;  1VE2 A;  2BB3 A;  4E16 A;  2CBF A;  1PJT A;  2EH5 A;  2DV5 A;  1PJQ A;  1V9A A;  2PCG A;  2DV4 A;  3ZGN A;  3SZU A;  2ZVC A;  2HUX A;  2EK2 A;  2PCI A;  2E08 A;  3UTD A;  2EH4 A;  3KWP A;  3DNF A;  4H4D A;  2YBO A;  2OWV A;  2P6D A;  2E07 A;  2OWK A;  3TIX B;  1VA0 A;  2HUV A;  4MUY A;  2P5C A;  3URK A;  3HH1 A;  2E15 A;  2DSI A;  2YBQ A;  2PCM A;  3UV6 A;  4MV0 A;  2EK3 A;  2DSG A;  2QBU A;  3F7T A;  2ELD A;  2E0K A;  2ENI A;  3SZO A;  1WDE A;  3UV3 A;  2E0N A;  2EJZ A;  3FFY A;  2EHC A;  2E8S A;  2P6K A;  2ELE A;  2P6I A;  2E16 A;  2E8Q A;  3UV7 A;  2EMU A;  2ED3 A;  3NUT A;  2EK7 A;  2P5F A;  2E4R A;  4H4C A;  2E8H A;  2ED5 A;  1PJS A;  2HUQ A;  2PB6 A;  4N7B A;  2PCH A;  2EGB A;  2PB4 A;  2EJK A;  2DXW A;  2HUT A;  3KE9 A;  3KEM A;  3SZL A;  3I4T A;  1WYZ A;  2HR8 A;  2E8R A;  2EN5 A;  1CBF A;  2EL0 A;  2EL2 A;  2P2X A;  3NDC A;  3ND1 A;  2PCK A;  2EK4 A;  2EHL A;  2KYY A;  1WNG A;  3T0F A;  3NEI A;  3KEL A;  2PCA A;  4EB3 A;  2EGS A;  2E7R A;  2EMR A;  2EL1 A;  2ZVB A;  3ZGL A;  2DXV A;  2PB5 A;  5HW4 A;  2DSH A;  4H4E A;  2DEK A;  2EKA A;  3KE8 A;  2DV7 A;  3KEF A;  2EGL A;  2OWG A;  2OWU A;  4MV5 A;  2OWF A;  3UWM A;  2EH2 A;  2E17 A;  3T0G A;  2DXX A;  1VCE A;  2E4N A;  2Z6R A;  2EL3 A;  1VHV A;  2NPN A;  2EJJ A;  1S4D A;  2P6L A;  3UTC A;  2P9D A;  4MUX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.