2E17A

Crystal structure of arg173 to ala mutant of diphthine synthase
Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKAMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (12-15)TI3 (39-42)TVIII1 (27-30)S4 (79-84)AH4 (94-104)S2 (29-33)AH2 (44-51)S3 (55-58)3H1 (72-76)TIV2 (85-88)TIV3 (89-92)S5 (108-111)3H2 (120-123)AH9 (244-254)3H3 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)3H4 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H5 (258-261)S1 (2-7)AH1 (18-25)TIV1 (34-37)AH3 (60-71)TI4 (87-90)TI5 (198-201)TVIII2 (195-198)S10 (202-207)O1 (261-263)AH5 (116-119)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
molecule keywords Probable diphthine synthase
total genus 84
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e17A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e17A01
2ED3A 1CBFA 1S4DA 2ENIA 2EL0A 2E08A 2E7RA 2EL2A 2QBUA 2EH2A 2E16A 2PCHA 2HUXA 3NUTA 1VHVA 2P5FA 2PCMA 2E8HA 2EK4A 2PCIA 2PCAA 2OWFA 2ED5A 2HUQA 2EL3A 2OWKA 1VE2A 2DSHA 2EL1A 2PCGA 2EMUA 2PB5A 2E4RA 3NDCA 2P6KA 1WDEA 2E8QA 1VA0A 2P9DA 2E15A 2PB6A 2HR8A 2HUVA 2PB4A 2E8RA 2OWGA 2ZVBA 1V9AA 1PJTA 2EGSA 2ELDA 2E07A 1PJSA 2EJJA 3ND1A 2DSIA 2ELEA 2EK2A 2E8SA 2YBQA 2CBFA 3KWPA 2YBOA 2E0KA 3NEIA 1WYZA 2DV4A 2NPNA 2ZVCA 4E16A 2DXXA 2Z6RA 2E0NA 2P6DA 2EEQA 1PJQA 2OWVA 2EK7A 2DXWA 2E17A 2EH4A 2PCKA 1VCEA 1WNGA 3I4TA 2EK3A 2EN5A 2DSGA 2EHCA 2EJZA 2DV3A 2EKAA 2DV7A 2EH5A 2E4NA 2EJKA 2EGLA 2EMRA 2BB3A 3FQ6A 2OWUA 5HW4A 2EGBA 2DV5A 2HUTA 2P6LA 2EHLA 2DXVA 2DEKA 2P6IA 2P5CA 3FFYA 2P2XA 3HH1A
chains in the Genus database with same CATH superfamily
4EB3A 2ED3A 3KE9A 3UV6A 1CBFA 1S4DA 2ENIA 2EL0A 2E08A 2E7RA 2EL2A 2QBUA 3KEFA 2EH2A 2E16A 4N7BA 2PCHA 3ZGLA 2HUXA 3NUTA 1VHVA 2P5FA 2PCMA 2E8HA 3SZLA 2EK4A 4MV0A 2PCIA 2PCAA 2OWFA 2ED5A 2HUQA 2EL3A 2OWKA 1VE2A 2DSHA 2EL1A 2PCGA 2EMUA 2PB5A 2E4RA 3NDCA 2P6KA 3UV7A 1WDEA 2E8QA 1VA0A 2P9DA 3DNFA 2E15A 2PB6A 2HR8A 3T0FA 2HUVA 2PB4A 2E8RA 3T0GA 2OWGA 2ZVBA 1V9AA 4MV5A 1PJTA 2EGSA 2ELDA 2E07A 1PJSA 2EJJA 3SZUA 3ND1A 3F7TA 2DSIA 2ELEA 3UTDA 3KE8A 2EK2A 2E8SA 2YBQA 2CBFA 3KWPA 3SZOA 2YBOA 2E0KA 3NEIA 3UV3A 1WYZA 2KYYA 2DV4A 2NPNA 3ZGNA 2ZVCA 4E16A 2DXXA 2Z6RA 4H4EA 2E0NA 2P6DA 2EEQA 1PJQA 2OWVA 3KEMA 2EK7A 2DXWA 3UTCA 2E17A 2EH4A 4MUXA 2PCKA 1VCEA 3LMMA 1WNGA 3I4TA 2EK3A 2EN5A 2DSGA 4H4CA 3UWMA 2EHCA 3KELA 4MUYA 2EJZA 3TIXB 2DV3A 2EKAA 2DV7A 2EH5A 2E4NA 2EJKA 2EGLA 3URKA 2EMRA 2BB3A 3FQ6A 2OWUA 5HW4A 2EGBA 2DV5A 2HUTA 2P6LA 2EHLA 2DXVA 2DEKA 2P6IA 2P5CA 3FFYA 4H4DA 2P2XA 3HH1A
chains in the Genus database with same CATH topology
4EB3A 2ED3A 3KE9A 3UV6A 1CBFA 1S4DA 2ENIA 2EL0A 2E08A 2E7RA 2EL2A 2QBUA 3KEFA 2EH2A 2E16A 4N7BA 2PCHA 3ZGLA 2HUXA 3NUTA 1VHVA 2P5FA 2PCMA 2E8HA 3SZLA 2EK4A 4MV0A 2PCIA 2PCAA 2OWFA 2ED5A 2HUQA 2EL3A 2OWKA 1VE2A 2DSHA 2EL1A 2PCGA 2EMUA 2PB5A 2E4RA 3NDCA 2P6KA 3UV7A 1WDEA 2E8QA 1VA0A 2P9DA 3DNFA 2E15A 2PB6A 2HR8A 3T0FA 2HUVA 2PB4A 2E8RA 3T0GA 2OWGA 2ZVBA 1V9AA 4MV5A 1PJTA 2EGSA 2ELDA 2E07A 1PJSA 2EJJA 3SZUA 3ND1A 3F7TA 2DSIA 2ELEA 3UTDA 3KE8A 2EK2A 2E8SA 2YBQA 2CBFA 3KWPA 3SZOA 2YBOA 2E0KA 3NEIA 3UV3A 1WYZA 2KYYA 2DV4A 2NPNA 3ZGNA 2ZVCA 4E16A 2DXXA 2Z6RA 4H4EA 2E0NA 2P6DA 2EEQA 1PJQA 2OWVA 3KEMA 2EK7A 2DXWA 3UTCA 2E17A 2EH4A 4MUXA 2PCKA 1VCEA 3LMMA 1WNGA 3I4TA 2EK3A 2EN5A 2DSGA 4H4CA 3UWMA 2EHCA 3KELA 4MUYA 2EJZA 3TIXB 2DV3A 2EKAA 2DV7A 2EH5A 2E4NA 2EJKA 2EGLA 3URKA 2EMRA 2BB3A 3FQ6A 2OWUA 5HW4A 2EGBA 2DV5A 2HUTA 2P6LA 2EHLA 2DXVA 2DEKA 2P6IA 2P5CA 3FFYA 4H4DA 2P2XA 3HH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ED3 A;  1CBF A;  1S4D A;  2ENI A;  2EL0 A;  2E08 A;  2E7R A;  2EL2 A;  2QBU A;  2EH2 A;  2E16 A;  2PCH A;  2HUX A;  3NUT A;  1VHV A;  2P5F A;  2PCM A;  2E8H A;  2EK4 A;  2PCI A;  2PCA A;  2OWF A;  2ED5 A;  2HUQ A;  2EL3 A;  2OWK A;  1VE2 A;  2DSH A;  2EL1 A;  2PCG A;  2EMU A;  2PB5 A;  2E4R A;  3NDC A;  2P6K A;  1WDE A;  2E8Q A;  1VA0 A;  2P9D A;  2E15 A;  2PB6 A;  2HR8 A;  2HUV A;  2PB4 A;  2E8R A;  2OWG A;  2ZVB A;  1V9A A;  1PJT A;  2EGS A;  2ELD A;  2E07 A;  1PJS A;  2EJJ A;  3ND1 A;  2DSI A;  2ELE A;  2EK2 A;  2E8S A;  2YBQ A;  2CBF A;  3KWP A;  2YBO A;  2E0K A;  3NEI A;  1WYZ A;  2DV4 A;  2NPN A;  2ZVC A;  4E16 A;  2DXX A;  2Z6R A;  2E0N A;  2P6D A;  2EEQ A;  1PJQ A;  2OWV A;  2EK7 A;  2DXW A;  2E17 A;  2EH4 A;  2PCK A;  1VCE A;  1WNG A;  3I4T A;  2EK3 A;  2EN5 A;  2DSG A;  2EHC A;  2EJZ A;  2DV3 A;  2EKA A;  2DV7 A;  2EH5 A;  2E4N A;  2EJK A;  2EGL A;  2EMR A;  2BB3 A;  3FQ6 A;  2OWU A;  5HW4 A;  2EGB A;  2DV5 A;  2HUT A;  2P6L A;  2EHL A;  2DXV A;  2DEK A;  2P6I A;  2P5C A;  3FFY A;  2P2X A;  3HH1 A; 
#chains in the Genus database with same CATH topology
 4EB3 A;  2ED3 A;  3KE9 A;  3UV6 A;  1CBF A;  1S4D A;  2ENI A;  2EL0 A;  2E08 A;  2E7R A;  2EL2 A;  2QBU A;  3KEF A;  2EH2 A;  2E16 A;  4N7B A;  2PCH A;  3ZGL A;  2HUX A;  3NUT A;  1VHV A;  2P5F A;  2PCM A;  2E8H A;  3SZL A;  2EK4 A;  4MV0 A;  2PCI A;  2PCA A;  2OWF A;  2ED5 A;  2HUQ A;  2EL3 A;  2OWK A;  1VE2 A;  2DSH A;  2EL1 A;  2PCG A;  2EMU A;  2PB5 A;  2E4R A;  3NDC A;  2P6K A;  3UV7 A;  1WDE A;  2E8Q A;  1VA0 A;  2P9D A;  3DNF A;  2E15 A;  2PB6 A;  2HR8 A;  3T0F A;  2HUV A;  2PB4 A;  2E8R A;  3T0G A;  2OWG A;  2ZVB A;  1V9A A;  4MV5 A;  1PJT A;  2EGS A;  2ELD A;  2E07 A;  1PJS A;  2EJJ A;  3SZU A;  3ND1 A;  3F7T A;  2DSI A;  2ELE A;  3UTD A;  3KE8 A;  2EK2 A;  2E8S A;  2YBQ A;  2CBF A;  3KWP A;  3SZO A;  2YBO A;  2E0K A;  3NEI A;  3UV3 A;  1WYZ A;  2KYY A;  2DV4 A;  2NPN A;  3ZGN A;  2ZVC A;  4E16 A;  2DXX A;  2Z6R A;  4H4E A;  2E0N A;  2P6D A;  2EEQ A;  1PJQ A;  2OWV A;  3KEM A;  2EK7 A;  2DXW A;  3UTC A;  2E17 A;  2EH4 A;  4MUX A;  2PCK A;  1VCE A;  3LMM A;  1WNG A;  3I4T A;  2EK3 A;  2EN5 A;  2DSG A;  4H4C A;  3UWM A;  2EHC A;  3KEL A;  4MUY A;  2EJZ A;  3TIX B;  2DV3 A;  2EKA A;  2DV7 A;  2EH5 A;  2E4N A;  2EJK A;  2EGL A;  3URK A;  2EMR A;  2BB3 A;  3FQ6 A;  2OWU A;  5HW4 A;  2EGB A;  2DV5 A;  2HUT A;  2P6L A;  2EHL A;  2DXV A;  2DEK A;  2P6I A;  2P5C A;  3FFY A;  4H4D A;  2P2X A;  3HH1 A; 
#chains in the Genus database with same CATH homology
 4EB3 A;  2ED3 A;  3KE9 A;  3UV6 A;  1CBF A;  1S4D A;  2ENI A;  2EL0 A;  2E08 A;  2E7R A;  2EL2 A;  2QBU A;  3KEF A;  2EH2 A;  2E16 A;  4N7B A;  2PCH A;  3ZGL A;  2HUX A;  3NUT A;  1VHV A;  2P5F A;  2PCM A;  2E8H A;  3SZL A;  2EK4 A;  4MV0 A;  2PCI A;  2PCA A;  2OWF A;  2ED5 A;  2HUQ A;  2EL3 A;  2OWK A;  1VE2 A;  2DSH A;  2EL1 A;  2PCG A;  2EMU A;  2PB5 A;  2E4R A;  3NDC A;  2P6K A;  3UV7 A;  1WDE A;  2E8Q A;  1VA0 A;  2P9D A;  3DNF A;  2E15 A;  2PB6 A;  2HR8 A;  3T0F A;  2HUV A;  2PB4 A;  2E8R A;  3T0G A;  2OWG A;  2ZVB A;  1V9A A;  4MV5 A;  1PJT A;  2EGS A;  2ELD A;  2E07 A;  1PJS A;  2EJJ A;  3SZU A;  3ND1 A;  3F7T A;  2DSI A;  2ELE A;  3UTD A;  3KE8 A;  2EK2 A;  2E8S A;  2YBQ A;  2CBF A;  3KWP A;  3SZO A;  2YBO A;  2E0K A;  3NEI A;  3UV3 A;  1WYZ A;  2KYY A;  2DV4 A;  2NPN A;  3ZGN A;  2ZVC A;  4E16 A;  2DXX A;  2Z6R A;  4H4E A;  2E0N A;  2P6D A;  2EEQ A;  1PJQ A;  2OWV A;  3KEM A;  2EK7 A;  2DXW A;  3UTC A;  2E17 A;  2EH4 A;  4MUX A;  2PCK A;  1VCE A;  3LMM A;  1WNG A;  3I4T A;  2EK3 A;  2EN5 A;  2DSG A;  4H4C A;  3UWM A;  2EHC A;  3KEL A;  4MUY A;  2EJZ A;  3TIX B;  2DV3 A;  2EKA A;  2DV7 A;  2EH5 A;  2E4N A;  2EJK A;  2EGL A;  3URK A;  2EMR A;  2BB3 A;  3FQ6 A;  2OWU A;  5HW4 A;  2EGB A;  2DV5 A;  2HUT A;  2P6L A;  2EHL A;  2DXV A;  2DEK A;  2P6I A;  2P5C A;  3FFY A;  4H4D A;  2P2X A;  3HH1 A; 
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